PRM1 (protamine 1) - Rat Genome Database

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Gene: PRM1 (protamine 1) Sus scrofa
Analyze
Symbol: PRM1
Name: protamine 1
RGD ID: 14051925
Description: ENCODES a protein that exhibits DNA binding (inferred); INVOLVED IN nucleus organization (ortholog); spermatid development (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 1C (ortholog); Landau-Kleffner syndrome (ortholog); MHC class II deficiency (ortholog); FOUND IN nucleus; cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: cysteine-rich protamine; P1-protamine; PRM-1; sperm protamine P1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl331,861,087 - 31,861,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1331,861,087 - 31,861,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2332,650,583 - 32,651,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:1627265   PMID:3211757   PMID:7959732   PMID:8240358   PMID:18462614   PMID:22301074  


Genomics

Comparative Map Data
PRM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl331,861,087 - 31,861,510 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1331,861,087 - 31,861,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2332,650,583 - 32,651,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,280,841 - 11,281,330 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,280,841 - 11,281,330 (-)EnsemblGRCh38hg38GRCh38
GRCh371611,374,698 - 11,375,187 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361611,282,194 - 11,282,693 (-)NCBINCBI36Build 36hg18NCBI36
Build 341611,282,199 - 11,282,685NCBI
Celera1611,544,077 - 11,544,576 (-)NCBICelera
Cytogenetic Map16p13.13NCBI
HuRef1611,292,416 - 11,292,915 (-)NCBIHuRef
CHM1_11611,374,599 - 11,375,098 (-)NCBICHM1_1
T2T-CHM13v2.01611,317,056 - 11,317,545 (-)NCBIT2T-CHM13v2.0
Prm1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391610,614,196 - 10,614,687 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1610,614,190 - 10,623,703 (-)EnsemblGRCm39 Ensembl
GRCm381610,796,332 - 10,796,823 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1610,796,326 - 10,805,839 (-)EnsemblGRCm38mm10GRCm38
MGSCv371610,796,425 - 10,796,916 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361610,709,910 - 10,710,401 (-)NCBIMGSCv36mm8
Celera1611,423,762 - 11,424,253 (-)NCBICelera
Cytogenetic Map16A1NCBI
cM Map165.87NCBI
Prm1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8105,378,740 - 5,379,235 (+)NCBIGRCr8
mRatBN7.2104,871,817 - 4,872,312 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx109,568,484 - 9,568,730 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0109,089,600 - 9,089,846 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0104,727,881 - 4,728,127 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0104,945,995 - 4,946,241 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl104,945,911 - 4,946,397 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0103,772,481 - 3,772,727 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4104,808,354 - 4,808,600 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera103,893,505 - 3,893,751 (+)NCBICelera
Cytogenetic Map10q11NCBI
PRM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21811,829,110 - 11,831,298 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11615,599,576 - 15,601,748 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,222,779 - 10,223,289 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11611,444,606 - 11,445,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PRM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1510,758,057 - 10,758,574 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606819,405,264 - 19,405,904 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in PRM1
2 total Variants

Expression

RNA-SEQ Expression

mesenchyme
mesoderm
renal system
reproductive system
1 1 1 1

Sequence


Ensembl Acc Id: ENSSSCT00000029974   ⟹   ENSSSCP00000019687
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl331,861,087 - 31,861,510 (+)Ensembl
RefSeq Acc Id: NM_214253   ⟹   NP_999418
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1331,861,087 - 31,861,529 (+)NCBI
Sequence:
RefSeq Acc Id: NP_999418   ⟸   NM_214253
- UniProtKB: P04101 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSSSCP00000019687   ⟸   ENSSSCT00000029974


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021337 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00015054098 UniProtKB/Swiss-Prot
  ENSSSCG00025045596 UniProtKB/Swiss-Prot
  ENSSSCG00030032482 UniProtKB/Swiss-Prot
  ENSSSCG00035049493 UniProtKB/Swiss-Prot
  ENSSSCG00040013140 UniProtKB/Swiss-Prot
  ENSSSCG00045024279 UniProtKB/Swiss-Prot
  ENSSSCG00050076776 UniProtKB/Swiss-Prot
  ENSSSCG00055013080 UniProtKB/Swiss-Prot
  ENSSSCG00060075310 UniProtKB/Swiss-Prot
  ENSSSCG00065075354 UniProtKB/Swiss-Prot
  ENSSSCG00070025800 UniProtKB/Swiss-Prot
  ENSSSCG00085025529 UniProtKB/Swiss-Prot
  ENSSSCG00090012625 UniProtKB/Swiss-Prot
  ENSSSCG00105037194 UniProtKB/Swiss-Prot
  ENSSSCG00110039002 UniProtKB/Swiss-Prot
  ENSSSCG00115016903 UniProtKB/Swiss-Prot
  ENSSSCG00130009752 UniProtKB/Swiss-Prot
Ensembl Transcript ENSSSCT00000029974 ENTREZGENE
  ENSSSCT00000029974.3 UniProtKB/TrEMBL
  ENSSSCT00000029974.4 UniProtKB/Swiss-Prot
  ENSSSCT00015072053.1 UniProtKB/Swiss-Prot
  ENSSSCT00025061938.1 UniProtKB/Swiss-Prot
  ENSSSCT00030044903.1 UniProtKB/Swiss-Prot
  ENSSSCT00035065987.1 UniProtKB/Swiss-Prot
  ENSSSCT00040017446.1 UniProtKB/Swiss-Prot
  ENSSSCT00045041379.1 UniProtKB/Swiss-Prot
  ENSSSCT00050105533.1 UniProtKB/Swiss-Prot
  ENSSSCT00055025718.1 UniProtKB/Swiss-Prot
  ENSSSCT00060103087.1 UniProtKB/Swiss-Prot
  ENSSSCT00065103977.1 UniProtKB/Swiss-Prot
  ENSSSCT00070051566.1 UniProtKB/Swiss-Prot
  ENSSSCT00085049057 UniProtKB/Swiss-Prot
  ENSSSCT00090022163 UniProtKB/Swiss-Prot
  ENSSSCT00105070934 UniProtKB/Swiss-Prot
  ENSSSCT00110074459 UniProtKB/Swiss-Prot
  ENSSSCT00115029676 UniProtKB/Swiss-Prot
  ENSSSCT00130018220 UniProtKB/Swiss-Prot
InterPro Protamine_P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397487 UniProtKB/Swiss-Prot
NCBI Gene PRM1 ENTREZGENE
Pfam Protamine_P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROTAMINE_P1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5S6GLE9_PIG UniProtKB/TrEMBL
  HSP1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
VGNC ID VGNC:110701 ENTREZGENE