GAS2 (growth arrest specific 2) - Rat Genome Database

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Gene: GAS2 (growth arrest specific 2) Homo sapiens
Analyze
Symbol: GAS2
Name: growth arrest specific 2
RGD ID: 1348959
HGNC Page HGNC:4167
Description: Predicted to enable actin filament binding activity. Predicted to be involved in actin crosslink formation. Predicted to act upstream of or within several processes, including ovarian follicle development; ovulation; and regulation of Notch signaling pathway. Predicted to be located in actin filament and cytosol.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DFNB125; GAS-2; growth arrest-specific 2; growth arrest-specific protein 2; MGC32610
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381122,626,002 - 22,813,055 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1122,625,509 - 22,813,001 (+)EnsemblGRCh38hg38GRCh38
GRCh371122,688,122 - 22,834,601 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361122,646,230 - 22,791,123 (+)NCBINCBI36Build 36hg18NCBI36
Build 341122,646,229 - 22,791,122NCBI
Celera1122,822,041 - 22,968,405 (+)NCBICelera
Cytogenetic Map11p14.3NCBI
HuRef1122,371,075 - 22,517,950 (+)NCBIHuRef
CHM1_11122,687,492 - 22,833,858 (+)NCBICHM1_1
T2T-CHM13v2.01122,746,758 - 22,933,721 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2HumanAutosomal Recessive Nonsyndromic Deafness 125  IAGPRGD:5969441628554872ClinVar Annotator: match by term: DEAFNESS, AUTOSOMAL RECESSIVE 125ClinVar 
GAS2HumanAutosomal Recessive Nonsyndromic Deafness 125  IAGPRGD:4074249458554872ClinVar Annotator: match by term: DEAFNESS, AUTOSOMAL RECESSIVE 125ClinVarPMID:33964205
GAS2Humanintellectual disability  IAGPRGD:427234668554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2Humanadenoid cystic carcinoma  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16762588
GAS2HumanSalivary Gland Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16762588
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2Humansensorineural hearing loss  ISSRGD:155824813592920 MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2HumanAutosomal Recessive Nonsyndromic Deafness 125  IAGP 7240710 OMIM 

1 to 20 of 117 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2Human(+)-schisandrin B multiple interactionsISORGD:15631676480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in decreased expression of GAS2 mRNA]CTDPMID:31150632
GAS2Human1,1-dichloroethene decreases expressionISORGD:15582486480464vinylidene chloride results in decreased expression of GAS2 mRNACTDPMID:26682919
GAS2Human1,2-dichloroethane decreases expressionISORGD:15582486480464ethylene dichloride results in decreased expression of GAS2 mRNACTDPMID:28189721
GAS2Human1,2-dichloroethane affects expressionISORGD:15582486480464ethylene dichloride affects the expression of GAS2 mRNACTDPMID:28960355
GAS2Human17alpha-ethynylestradiol increases expressionISORGD:15582486480464Ethinyl Estradiol results in increased expression of GAS2 mRNACTDPMID:17942748
GAS2Human17alpha-ethynylestradiol multiple interactionsISORGD:15582486480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of GAS2 mRNACTDPMID:17942748
GAS2Human17beta-estradiol decreases expressionEXP 6480464Estradiol results in decreased expression of GAS2 mRNACTDPMID:20106945
GAS2Human17beta-estradiol decreases expressionISORGD:15582486480464Estradiol results in decreased expression of GAS2 mRNACTDPMID:39298647
GAS2Human2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsISORGD:155824864804642,4,5,2',4',5'-hexachlorobiphenyl affects the reaction [NR1I2 protein affects the expression of GAS2 mRNA]CTDPMID:32352317
GAS2Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISORGD:15582486480464[Tetrachlorodibenzodioxin binds to AHR protein] which results in decreased expression of GAS2 mRNA; [Tetrachlorodibenzodioxin co-treated more ...CTDPMID:16214954|PMID:17942748
GAS2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:15631676480464Tetrachlorodibenzodioxin results in increased expression of GAS2 mRNACTDPMID:33387578
GAS2Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISORGD:15631676480464Tetrachlorodibenzodioxin results in decreased expression of GAS2 mRNACTDPMID:21215274|PMID:21724226|PMID:32109520
GAS2Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of GAS2 mRNACTDPMID:20106945|PMID:21632981
GAS2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:15631676480464Tetrachlorodibenzodioxin affects the expression of GAS2 mRNACTDPMID:22298810
GAS2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:15582486480464Tetrachlorodibenzodioxin results in increased expression of GAS2 mRNACTDPMID:19933214
GAS2Human2,5-hexanedione increases expressionISORGD:156316764804642,5-hexanedione results in increased expression of GAS2 mRNACTDPMID:22952946
GAS2Human3',5'-cyclic UMP affects bindingEXP 6480464GAS2 protein binds to cyclic 3',5'-uridine monophosphateCTDPMID:30528433
GAS2Human3-isobutyl-1-methyl-7H-xanthine multiple interactionsISORGD:15582486480464[Dexamethasone co-treated with rosiglitazone co-treated with 1-Methyl-3-isobutylxanthine co-treated with INS1 protein] results in decreased expression more ...CTDPMID:16054899
GAS2Human6-propyl-2-thiouracil decreases expressionISORGD:15631676480464Propylthiouracil results in decreased expression of GAS2 mRNACTDPMID:30047161
GAS2Humanaflatoxin B1 affects expressionEXP 6480464Aflatoxin B1 affects the expression of GAS2 proteinCTDPMID:20106945

1 to 20 of 117 rows

Biological Process
1 to 10 of 10 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2Humanactin crosslink formation involved_inIBAPANTHER:PTN005319067|dictyBase:DDB_G0269424150520179 GO_CentralGO_REF:0000033
GAS2Humanantral ovarian follicle growth acts_upstream_of_or_withinIEAUniProtKB:P11862|ensembl:ENSMUSP00000103217150520179 EnsemblGO_REF:0000107
GAS2Humanapoptotic process involved_inIEAUniProtKB-KW:KW-0053150520179 UniProtGO_REF:0000043
GAS2Humanapoptotic process involved_inTAS 150520179 PMID:9521882PINCPMID:9521882
GAS2Humanbasement membrane organization acts_upstream_of_or_withinIEAUniProtKB:P11862|ensembl:ENSMUSP00000103217150520179 EnsemblGO_REF:0000107
GAS2Humaninitiation of primordial ovarian follicle growth acts_upstream_of_or_withinIEAUniProtKB:P11862|ensembl:ENSMUSP00000103217150520179 EnsemblGO_REF:0000107
GAS2Humanovulation acts_upstream_of_or_withinIEAUniProtKB:P11862|ensembl:ENSMUSP00000103217150520179 EnsemblGO_REF:0000107
GAS2Humanregulation of cell cycle involved_inIEAUniProtKB-KW:KW-0338150520179 UniProtGO_REF:0000043
GAS2Humanregulation of cell shape involved_inIEAUniProtKB-KW:KW-0133150520179 UniProtGO_REF:0000043
GAS2Humanregulation of Notch signaling pathway acts_upstream_of_or_withinIEAUniProtKB:P11862|ensembl:ENSMUSP00000103217150520179 EnsemblGO_REF:0000107
1 to 10 of 10 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2Humanactin filament located_inTAS 150520179 PMID:1607387PINCPMID:1607387
GAS2Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
GAS2Humancytoskeleton located_inIEAUniProtKB-KW:KW-0206150520179 UniProtGO_REF:0000043
GAS2Humancytosol located_inTAS 150520179 ReactomeReactome:R-HSA-201639
GAS2Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
GAS2Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
GAS2Humanstress fiber located_inIEAUniProtKB-SubCell:SL-0501150520179 UniProtGO_REF:0000044

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2Humanactin filament binding enablesIBAPANTHER:PTN005319067|UniProtKB:Q8NHY3|dictyBase:DDB_G0269424150520179 GO_CentralGO_REF:0000033
GAS2Humanmicrotubule binding enablesIEAInterPro:IPR003108|InterPro:IPR036534150520179 InterProGO_REF:0000002
GAS2Humanprotein binding enablesIPIUniProtKB:Q8IYX1150520179 PMID:32296183IntActPMID:32296183

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2HumanAbnormal facial shape  IAGP 8699517 HPOMIM:620877|PMID:33964205
GAS2HumanAbnormal vestibular function  IAGP 8699517 HPOMIM:620877|PMID:33964205
GAS2HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:620877|PMID:33964205
GAS2HumanChildhood onset  IAGP 8699517 HPOMIM:620877|PMID:33964205
GAS2HumanCongenital onset  IAGP 8699517 HPOMIM:620877|PMID:33964205
GAS2HumanDelayed speech and language development  IAGP 8699517 HPOMIM:620877|PMID:33964205
GAS2HumanSensorineural hearing impairment  IAGP 8699517 HPOMIM:620877|PMID:33964205
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GAS2HumanIntellectual disability  IAGPRGD:427234668554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:1056466   PMID:1607387   PMID:3409319   PMID:9521882   PMID:10564664   PMID:11337467   PMID:11387205   PMID:12477932   PMID:14702039   PMID:15124103   PMID:15489334   PMID:15817486  
PMID:16344560   PMID:20677014   PMID:20679491   PMID:21546767   PMID:21832049   PMID:21873635   PMID:24465953   PMID:25925944   PMID:26358320   PMID:27085973   PMID:29987050   PMID:30021884  
PMID:31528096   PMID:32296183   PMID:32457219   PMID:32572885   PMID:33103301   PMID:33964205   PMID:35944360   PMID:36054080   PMID:38956677  



GAS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381122,626,002 - 22,813,055 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1122,625,509 - 22,813,001 (+)EnsemblGRCh38hg38GRCh38
GRCh371122,688,122 - 22,834,601 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361122,646,230 - 22,791,123 (+)NCBINCBI36Build 36hg18NCBI36
Build 341122,646,229 - 22,791,122NCBI
Celera1122,822,041 - 22,968,405 (+)NCBICelera
Cytogenetic Map11p14.3NCBI
HuRef1122,371,075 - 22,517,950 (+)NCBIHuRef
CHM1_11122,687,492 - 22,833,858 (+)NCBICHM1_1
T2T-CHM13v2.01122,746,758 - 22,933,721 (+)NCBIT2T-CHM13v2.0
Gas2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39751,511,560 - 51,644,753 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl751,511,763 - 51,644,723 (+)EnsemblGRCm39 Ensembl
GRCm38751,861,791 - 51,995,005 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl751,862,015 - 51,994,975 (+)EnsemblGRCm38mm10GRCm38
MGSCv37759,134,515 - 59,249,828 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36751,747,164 - 51,862,477 (+)NCBIMGSCv36mm8
Celera749,252,262 - 49,365,402 (+)NCBICelera
Cytogenetic Map7B4NCBI
cM Map732.87NCBI
Gas2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81110,587,952 - 110,721,572 (+)NCBIGRCr8
mRatBN7.21101,452,361 - 101,582,619 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1101,482,591 - 101,582,619 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1106,891,445 - 106,991,464 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01115,363,339 - 115,463,358 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01108,666,556 - 108,766,696 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01107,234,389 - 107,363,624 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1107,262,659 - 107,363,788 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01108,275,144 - 108,405,240 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41101,697,265 - 101,798,495 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera195,649,226 - 95,749,292 (+)NCBICelera
Cytogenetic Map1q22NCBI
Gas2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554763,100,479 - 3,226,262 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554763,092,461 - 3,226,269 (+)NCBIChiLan1.0ChiLan1.0
GAS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2924,914,966 - 25,099,422 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11124,879,135 - 25,065,347 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01122,639,677 - 22,822,208 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11122,547,301 - 22,729,241 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1122,583,367 - 22,729,243 (+)Ensemblpanpan1.1panPan2
GAS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12144,277,996 - 44,406,210 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2144,286,531 - 44,405,060 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2143,753,331 - 43,880,913 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02145,395,215 - 45,524,757 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2145,372,654 - 45,524,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12144,395,431 - 44,522,737 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02144,567,541 - 44,695,231 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02144,960,441 - 45,088,773 (+)NCBIUU_Cfam_GSD_1.0
Gas2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494740,477,656 - 40,600,129 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366543,326,511 - 3,448,872 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366543,326,557 - 3,448,930 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl236,711,612 - 36,885,620 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1236,712,758 - 36,885,436 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2239,823,080 - 39,928,195 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,201,546 - 42,376,934 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038139,505,960 - 139,648,400 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gas2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476613,612,702 - 13,741,606 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476613,610,229 - 13,741,604 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in GAS2
29 total Variants

1 to 10 of 66 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 11p14.3(chr11:22115602-25375696)x1 copy number loss See cases [RCV000052647] Chr11:22115602..25375696 [GRCh38]
Chr11:22137148..25397242 [GRCh37]
Chr11:22093724..25353818 [NCBI36]
Chr11:11p14.3
pathogenic
GRCh38/hg38 11p14.3-12(chr11:22550115-38199159)x1 copy number loss See cases [RCV000052648] Chr11:22550115..38199159 [GRCh38]
Chr11:22571661..38220709 [GRCh37]
Chr11:22528237..38177285 [NCBI36]
Chr11:11p14.3-12
pathogenic
GRCh38/hg38 11p15.5-13(chr11:202758-31726224)x3 copy number gain See cases [RCV000053613] Chr11:202758..31726224 [GRCh38]
Chr11:202758..31747772 [GRCh37]
Chr11:192758..31704348 [NCBI36]
Chr11:11p15.5-13
pathogenic
NM_001143830.1(GAS2):c.497T>C (p.Leu166Ser) single nucleotide variant Malignant melanoma [RCV000069301] Chr11:22749143 [GRCh38]
Chr11:22770689 [GRCh37]
Chr11:22727265 [NCBI36]
Chr11:11p14.3
not provided
NM_001143830.1(GAS2):c.637C>A (p.Pro213Thr) single nucleotide variant Malignant melanoma [RCV000062189] Chr11:22755867 [GRCh38]
Chr11:22777413 [GRCh37]
Chr11:22733989 [NCBI36]
Chr11:11p14.3
not provided
NM_001143830.1(GAS2):c.723+12527G>A single nucleotide variant Lung cancer [RCV000109933] Chr11:22768480 [GRCh38]
Chr11:22790026 [GRCh37]
Chr11:11p14.3
uncertain significance
NM_001143830.1(GAS2):c.723+12931T>C single nucleotide variant Lung cancer [RCV000109934] Chr11:22768884 [GRCh38]
Chr11:22790430 [GRCh37]
Chr11:11p14.3
uncertain significance
NM_001143830.1(GAS2):c.267+14662G>A single nucleotide variant Lung cancer [RCV000109931] Chr11:22700451 [GRCh38]
Chr11:22721997 [GRCh37]
Chr11:11p14.3
uncertain significance
Single allele deletion Intellectual disability [RCV001293382] Chr11:118359328..118372573 [GRCh37]
Chr11:11p15.3-q23.3
pathogenic
GRCh38/hg38 11p15.1-14.2(chr11:21838014-26738627)x3 copy number gain See cases [RCV000137849] Chr11:21838014..26738627 [GRCh38]
Chr11:21859560..26760174 [GRCh37]
Chr11:21816136..26716750 [NCBI36]
Chr11:11p15.1-14.2
uncertain significance
1 to 10 of 66 rows

Predicted Target Of
Summary Value
Count of predictions:1811
Count of miRNA genes:678
Interacting mature miRNAs:772
Transcripts:ENST00000278187, ENST00000433790, ENST00000454584, ENST00000524701, ENST00000526665, ENST00000528582, ENST00000532398, ENST00000533092, ENST00000533363, ENST00000534801
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1576345LVC1_HLeft ventricular contractility QTL 1 (human)3.93Left ventricular contractility11797076733970767Human
597335672GWAS1431746_Hsevere acute respiratory syndrome, COVID-19 QTL GWAS1431746 (human)9e-09severe acute respiratory syndrome, COVID-19112278874222788743Human
2289313BW388_HBody weight QTL 388 (human)1.570.00356Body fat amountabdominal11443467130434671Human
1559107SCL32_HSerum cholesterol level QTL 32 (human)3.27Lipid levelLDL cholesterol11289243028892430Human
597620426GWAS1677286_Hhearing loss QTL GWAS1677286 (human)1e-11hearing loss112280013722800138Human
597054179GWAS1150253_Hintelligence QTL GWAS1150253 (human)0.000002intelligence112276120922761210Human
1559104SCL15_HSerum cholesterol level QTL 15 (human)2.60.06Lipid levelhyperlipidemia susceptibility111589236841892368Human
597433332GWAS1529406_Hprotein measurement QTL GWAS1529406 (human)3e-11protein measurement112281051022810511Human
597341011GWAS1437085_Hbreast density QTL GWAS1437085 (human)0.000005breast density112280201122802012Human
407049001GWAS697977_Hchronic kidney disease QTL GWAS697977 (human)0.000002chronic kidney disease112280821122808212Human

1 to 10 of 11 rows
RH121950  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371122,747,644 - 22,747,914UniSTSGRCh37
Build 361122,704,220 - 22,704,490RGDNCBI36
Celera1122,881,501 - 22,881,771RGD
Cytogenetic Map11p14.3UniSTS
HuRef1122,430,546 - 22,430,816UniSTS
TNG Radiation Hybrid Map1110865.0UniSTS
D11S3519  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371122,821,222 - 22,821,346UniSTSGRCh37
Build 361122,777,798 - 22,777,922RGDNCBI36
Celera1122,955,078 - 22,955,202RGD
Cytogenetic Map11p14.3UniSTS
SHGC-105084  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371122,714,827 - 22,715,139UniSTSGRCh37
Build 361122,671,403 - 22,671,715RGDNCBI36
Celera1122,848,681 - 22,848,993RGD
Cytogenetic Map11p14.3UniSTS
HuRef1122,397,717 - 22,398,029UniSTS
TNG Radiation Hybrid Map1110857.0UniSTS
SHGC-105087  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371122,714,943 - 22,715,288UniSTSGRCh37
Build 361122,671,519 - 22,671,864RGDNCBI36
Celera1122,848,797 - 22,849,142RGD
Cytogenetic Map11p14.3UniSTS
HuRef1122,397,833 - 22,398,178UniSTS
TNG Radiation Hybrid Map1110854.0UniSTS
GAS2_660  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371122,833,808 - 22,834,587UniSTSGRCh37
Build 361122,790,384 - 22,791,163RGDNCBI36
Celera1122,967,663 - 22,968,445RGD
HuRef1122,517,208 - 22,517,990UniSTS
RH68529  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371122,822,778 - 22,822,956UniSTSGRCh37
Build 361122,779,354 - 22,779,532RGDNCBI36
Celera1122,956,634 - 22,956,812RGD
Cytogenetic Map11p14.3UniSTS
HuRef1122,506,179 - 22,506,357UniSTS
GeneMap99-GB4 RH Map1183.89UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1204 2422 2787 2238 4924 1717 2314 4 619 1808 460 2261 7127 6313 47 3698 835 1691 1583 165


1 to 30 of 42 rows
RefSeq Transcripts NM_001143830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001351224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001391933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001391934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001391935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001391936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001391937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_177553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047426750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054368392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC103801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 42 rows

Ensembl Acc Id: ENST00000278187   ⟹   ENSP00000278187
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,668,108 - 22,812,996 (+)Ensembl
Ensembl Acc Id: ENST00000454584   ⟹   ENSP00000401145
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,666,611 - 22,813,001 (+)Ensembl
Ensembl Acc Id: ENST00000524701   ⟹   ENSP00000432026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,668,108 - 22,813,001 (+)Ensembl
Ensembl Acc Id: ENST00000526665
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,755,648 - 22,755,953 (+)Ensembl
Ensembl Acc Id: ENST00000528582   ⟹   ENSP00000432584
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,625,642 - 22,749,190 (+)Ensembl
Ensembl Acc Id: ENST00000532398   ⟹   ENSP00000435946
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,674,773 - 22,749,261 (+)Ensembl
Ensembl Acc Id: ENST00000533092
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,666,583 - 22,702,630 (+)Ensembl
Ensembl Acc Id: ENST00000533363   ⟹   ENSP00000434478
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,667,076 - 22,726,432 (+)Ensembl
Ensembl Acc Id: ENST00000534801   ⟹   ENSP00000433182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,672,577 - 22,737,760 (+)Ensembl
Ensembl Acc Id: ENST00000630668   ⟹   ENSP00000485708
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,668,108 - 22,731,347 (+)Ensembl
Ensembl Acc Id: ENST00000648096
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1122,625,509 - 22,626,403 (+)Ensembl
RefSeq Acc Id: NM_001143830   ⟹   NP_001137302
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,813,001 (+)NCBI
GRCh371122,688,160 - 22,834,547 (+)RGD
Celera1122,822,041 - 22,968,405 (+)RGD
HuRef1122,371,075 - 22,517,950 (+)ENTREZGENE
CHM1_11122,687,492 - 22,833,858 (+)NCBI
T2T-CHM13v2.01122,787,272 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001351224   ⟹   NP_001338153
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,813,001 (+)NCBI
T2T-CHM13v2.01122,787,272 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001391933   ⟹   NP_001378862
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,668,696 - 22,813,001 (+)NCBI
T2T-CHM13v2.01122,789,357 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001391934   ⟹   NP_001378863
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,813,001 (+)NCBI
T2T-CHM13v2.01122,787,272 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001391935   ⟹   NP_001378864
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,672,616 - 22,813,001 (+)NCBI
T2T-CHM13v2.01122,793,265 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001391936   ⟹   NP_001378865
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,668,696 - 22,813,001 (+)NCBI
T2T-CHM13v2.01122,789,357 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001391937   ⟹   NP_001378866
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,576 - 22,813,001 (+)NCBI
T2T-CHM13v2.01122,787,237 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_005256   ⟹   NP_005247
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,674,774 - 22,813,001 (+)NCBI
GRCh371122,688,160 - 22,834,547 (+)RGD
Build 361122,652,931 - 22,791,123 (+)NCBI Archive
Celera1122,822,041 - 22,968,405 (+)RGD
HuRef1122,371,075 - 22,517,950 (+)ENTREZGENE
CHM1_11122,695,640 - 22,833,858 (+)NCBI
T2T-CHM13v2.01122,795,424 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NM_177553   ⟹   NP_808221
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,668,108 - 22,813,001 (+)NCBI
GRCh371122,688,160 - 22,834,547 (+)RGD
Build 361122,646,230 - 22,791,123 (+)NCBI Archive
Celera1122,822,041 - 22,968,405 (+)RGD
HuRef1122,371,075 - 22,517,950 (+)ENTREZGENE
CHM1_11122,688,986 - 22,833,858 (+)NCBI
T2T-CHM13v2.01122,788,769 - 22,933,667 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147085
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,813,055 (+)NCBI
T2T-CHM13v2.01122,787,272 - 22,933,721 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519971   ⟹   XP_011518273
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,813,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519972   ⟹   XP_011518274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,626,002 - 22,813,055 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011519975   ⟹   XP_011518277
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,761,816 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047426744   ⟹   XP_047282700
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,813,055 (+)NCBI
RefSeq Acc Id: XM_047426745   ⟹   XP_047282701
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,626,002 - 22,813,055 (+)NCBI
RefSeq Acc Id: XM_047426746   ⟹   XP_047282702
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,626,002 - 22,813,055 (+)NCBI
RefSeq Acc Id: XM_047426747   ⟹   XP_047282703
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,813,055 (+)NCBI
RefSeq Acc Id: XM_047426749   ⟹   XP_047282705
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,766,434 (+)NCBI
RefSeq Acc Id: XM_047426750   ⟹   XP_047282706
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,611 - 22,766,434 (+)NCBI
RefSeq Acc Id: XM_054368382   ⟹   XP_054224357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,787,272 - 22,933,721 (+)NCBI
RefSeq Acc Id: XM_054368383   ⟹   XP_054224358
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,787,272 - 22,933,721 (+)NCBI
RefSeq Acc Id: XM_054368384   ⟹   XP_054224359
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,748,704 - 22,933,721 (+)NCBI
RefSeq Acc Id: XM_054368385   ⟹   XP_054224360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,748,704 - 22,933,721 (+)NCBI
RefSeq Acc Id: XM_054368386   ⟹   XP_054224361
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,787,276 - 22,933,721 (+)NCBI
RefSeq Acc Id: XM_054368387   ⟹   XP_054224362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,746,758 - 22,933,721 (+)NCBI
RefSeq Acc Id: XM_054368390   ⟹   XP_054224365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,787,272 - 22,887,069 (+)NCBI
RefSeq Acc Id: XM_054368391   ⟹   XP_054224366
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,787,272 - 22,887,069 (+)NCBI
RefSeq Acc Id: XM_054368392   ⟹   XP_054224367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01122,787,272 - 22,882,460 (+)NCBI
1 to 30 of 43 rows
Protein RefSeqs NP_001137302 (Get FASTA)   NCBI Sequence Viewer  
  NP_001338153 (Get FASTA)   NCBI Sequence Viewer  
  NP_001378862 (Get FASTA)   NCBI Sequence Viewer  
  NP_001378863 (Get FASTA)   NCBI Sequence Viewer  
  NP_001378864 (Get FASTA)   NCBI Sequence Viewer  
  NP_001378865 (Get FASTA)   NCBI Sequence Viewer  
  NP_001378866 (Get FASTA)   NCBI Sequence Viewer  
  NP_005247 (Get FASTA)   NCBI Sequence Viewer  
  NP_808221 (Get FASTA)   NCBI Sequence Viewer  
  XP_011518273 (Get FASTA)   NCBI Sequence Viewer  
  XP_011518274 (Get FASTA)   NCBI Sequence Viewer  
  XP_011518277 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282700 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282701 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282702 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282703 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282705 (Get FASTA)   NCBI Sequence Viewer  
  XP_047282706 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224357 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224358 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224359 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224360 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224361 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224362 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224365 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224366 (Get FASTA)   NCBI Sequence Viewer  
  XP_054224367 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC52058 (Get FASTA)   NCBI Sequence Viewer  
  AAH05077 (Get FASTA)   NCBI Sequence Viewer  
  AAH13326 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 43 rows
1 to 5 of 35 rows
1 to 5 of 35 rows
RefSeq Acc Id: NP_001137302   ⟸   NM_001143830
- Peptide Label: isoform a
- UniProtKB: Q6ICV8 (UniProtKB/Swiss-Prot),   D3DQZ0 (UniProtKB/Swiss-Prot),   B2R9C8 (UniProtKB/Swiss-Prot),   Q7Z3X8 (UniProtKB/Swiss-Prot),   O43903 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_808221   ⟸   NM_177553
- Peptide Label: isoform a
- UniProtKB: Q6ICV8 (UniProtKB/Swiss-Prot),   D3DQZ0 (UniProtKB/Swiss-Prot),   B2R9C8 (UniProtKB/Swiss-Prot),   Q7Z3X8 (UniProtKB/Swiss-Prot),   O43903 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_005247   ⟸   NM_005256
- Peptide Label: isoform a
- UniProtKB: Q6ICV8 (UniProtKB/Swiss-Prot),   D3DQZ0 (UniProtKB/Swiss-Prot),   B2R9C8 (UniProtKB/Swiss-Prot),   Q7Z3X8 (UniProtKB/Swiss-Prot),   O43903 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011518274   ⟸   XM_011519972
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011518273   ⟸   XM_011519971
- Peptide Label: isoform X1
- Sequence:
Calponin-homology (CH)   GAR

Name Modeler Protein Id AA Range Protein Structure
AF-O43903-F1-model_v2 AlphaFold O43903 1-313 view protein structure

RGD ID:7219861
Promoter ID:EPDNEW_H15676
Type:initiation region
Name:GAS2_4
Description:growth arrest specific 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15678  EPDNEW_H15677  EPDNEW_H15679  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,625,598 - 22,625,658EPDNEW
RGD ID:6788959
Promoter ID:HG_KWN:12495
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:UC009YIE.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361122,644,769 - 22,645,269 (+)MPROMDB
RGD ID:6788957
Promoter ID:HG_KWN:12496
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:UC001MQM.1,   UC001MQN.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361122,645,281 - 22,646,482 (+)MPROMDB
RGD ID:6788958
Promoter ID:HG_KWN:12497
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:UC001MQO.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361122,652,846 - 22,653,346 (+)MPROMDB
RGD ID:7219865
Promoter ID:EPDNEW_H15677
Type:initiation region
Name:GAS2_3
Description:growth arrest specific 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15676  EPDNEW_H15678  EPDNEW_H15679  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,666,620 - 22,666,680EPDNEW
RGD ID:7219863
Promoter ID:EPDNEW_H15678
Type:initiation region
Name:GAS2_1
Description:growth arrest specific 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15676  EPDNEW_H15677  EPDNEW_H15679  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,668,108 - 22,668,168EPDNEW
RGD ID:7219867
Promoter ID:EPDNEW_H15679
Type:initiation region
Name:GAS2_2
Description:growth arrest specific 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15676  EPDNEW_H15678  EPDNEW_H15677  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381122,674,848 - 22,674,908EPDNEW


1 to 40 of 45 rows
Database
Acc Id
Source(s)
COSMIC GAS2 COSMIC
Ensembl Genes ENSG00000148935 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000278187 ENTREZGENE
  ENST00000278187.7 UniProtKB/Swiss-Prot
  ENST00000454584 ENTREZGENE
  ENST00000454584.7 UniProtKB/Swiss-Prot
  ENST00000524701.5 UniProtKB/Swiss-Prot
  ENST00000532398 ENTREZGENE
  ENST00000630668.2 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.418.10 UniProtKB/Swiss-Prot
  3.30.920.20 UniProtKB/Swiss-Prot
GTEx ENSG00000148935 GTEx
HGNC ID HGNC:4167 ENTREZGENE
Human Proteome Map GAS2 Human Proteome Map
InterPro CH-domain UniProtKB/Swiss-Prot
  CH_dom_sf UniProtKB/Swiss-Prot
  GAR_dom UniProtKB/Swiss-Prot
  GAR_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:2620 UniProtKB/Swiss-Prot
NCBI Gene 2620 ENTREZGENE
OMIM 602835 OMIM
PANTHER PTHR46756:SF9 UniProtKB/Swiss-Prot
  TRANSGELIN UniProtKB/Swiss-Prot
Pfam GAS2 UniProtKB/Swiss-Prot
  PF00307 UniProtKB/Swiss-Prot
PharmGKB PA28580 PharmGKB
PROSITE GAR UniProtKB/Swiss-Prot
  PS50021 UniProtKB/Swiss-Prot
SMART GAS2 UniProtKB/Swiss-Prot
  SM00033 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF143575 UniProtKB/Swiss-Prot
  SSF47576 UniProtKB/Swiss-Prot
UniProt B2R9C8 ENTREZGENE
  D3DQZ0 ENTREZGENE
  E9PM28_HUMAN UniProtKB/TrEMBL
  E9PQ37_HUMAN UniProtKB/TrEMBL
  E9PQ74_HUMAN UniProtKB/TrEMBL
  E9PRR5 ENTREZGENE, UniProtKB/TrEMBL
  GAS2_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q6ICV8 ENTREZGENE
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-01 GAS2  growth arrest specific 2  GAS2  growth arrest-specific 2  Symbol and/or name change 5135510 APPROVED