NEUROG3 (neurogenin 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: NEUROG3 (neurogenin 3) Homo sapiens
Analyze
Symbol: NEUROG3
Name: neurogenin 3
RGD ID: 1344822
HGNC Page HGNC:13806
Description: Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Located in nucleus. Implicated in congenital malabsorptive diarrhea 4; glucose intolerance; and type 2 diabetes mellitus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Atoh5; bHLHa7; class A basic helix-loop-helix protein 7; Math4B; neurogenin-3; NGN-3; ngn3; protein atonal homolog 5
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,571,485 - 69,573,422 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,571,698 - 69,573,422 (-)EnsemblGRCh38hg38GRCh38
GRCh371071,331,454 - 71,333,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361071,001,797 - 71,003,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 341071,001,796 - 71,003,128NCBI
Celera1064,608,651 - 64,610,070 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,321,715 - 65,323,132 (-)NCBIHuRef
CHM1_11071,613,524 - 71,614,943 (-)NCBICHM1_1
T2T-CHM13v2.01070,439,446 - 70,441,420 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3HumanExperimental Diabetes Mellitus  ISONeurog3 (Mus musculus)2313774 RGD 
NEUROG3Humanglucose intolerance susceptibilityIAGP 1601481DNA:polymorphism:cds:p.S199FRGD 
NEUROG3Humanhyperglycemia  ISONeurog3 (Mus musculus)1642077associated with Diabetes Mellitus and ExperimentalRGD 
NEUROG3Humantype 2 diabetes mellitus  IAGP 2313775 RGD 
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Humancongenital malabsorptive diarrhea 4  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Congenital malabsorptive diarrhea 4ClinVarPMID:25741868
NEUROG3Humancongenital malabsorptive diarrhea 4  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital malabsorptive diarrhea 4ClinVarPMID:16855267 more ...
NEUROG3Humancongenital malabsorptive diarrhea 4  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Congenital malabsorptive diarrhea 4ClinVarPMID:25741868 and PMID:28492532
NEUROG3Humancongenital malabsorptive diarrhea 4  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital malabsorptive diarrhea 4ClinVar 
NEUROG3Humancongenital malabsorptive diarrhea 4  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: ENTERIC ANENDOCRINOSISClinVarPMID:16855267 and PMID:25741868
NEUROG3Humancongenital malabsorptive diarrhea 4  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital malabsorptive diarrhea 4ClinVarPMID:24033266 more ...
NEUROG3Humangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
NEUROG3Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532
NEUROG3Humangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
1 to 9 of 9 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Humancongenital malabsorptive diarrhea 4  EXP 11554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Humancongenital malabsorptive diarrhea 4  IAGP 7240710 OMIM 

1 to 20 of 35 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Human1,2-dimethylhydrazine increases expressionISONeurog3 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of NEUROG3 mRNACTDPMID:22206623
NEUROG3Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISONeurog3 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of NEUROG3 mRNACTDPMID:24058054
NEUROG3Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISONeurog3 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of NEUROG3 mRNACTDPMID:22298810
NEUROG3Human3H-1,2-dithiole-3-thione increases expressionISONeurog3 (Rattus norvegicus)64804641 and 2-dithiol-3-thione results in increased expression of NEUROG3 mRNACTDPMID:19162173
NEUROG3Humanaflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of NEUROG3 mRNACTDPMID:22100608 and PMID:32234424
NEUROG3Humanall-trans-retinol decreases expressionISONeurog3 (Mus musculus)6480464Vitamin A results in decreased expression of NEUROG3 mRNACTDPMID:30944279
NEUROG3Humanammonium chloride affects expressionISONeurog3 (Rattus norvegicus)6480464Ammonium Chloride affects the expression of NEUROG3 mRNACTDPMID:16483693
NEUROG3Humanatrazine increases expressionEXP 6480464Atrazine results in increased expression of NEUROG3 mRNACTDPMID:22378314
NEUROG3Humanbenzo[a]pyrene increases methylationEXP 6480464Benzo(a)pyrene results in increased methylation of NEUROG3 3' UTR more ...CTDPMID:27901495
NEUROG3Humanbenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of NEUROG3 mRNACTDPMID:32234424
NEUROG3Humanbis(2-chloroethyl) sulfide increases expressionISONeurog3 (Mus musculus)6480464Mustard Gas results in increased expression of NEUROG3 mRNACTDPMID:15674843
NEUROG3Humanbisphenol A decreases expressionISONeurog3 (Rattus norvegicus)6480464bisphenol A results in decreased expression of NEUROG3 mRNACTDPMID:25181051
NEUROG3Humanbisphenol A affects methylationISONeurog3 (Mus musculus)6480464bisphenol A affects the methylation of NEUROG3 promoterCTDPMID:27334623
NEUROG3Humanbisphenol A increases methylationISONeurog3 (Rattus norvegicus)6480464bisphenol A results in increased methylation of NEUROG3 geneCTDPMID:28505145
NEUROG3Humancadmium atom multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of NEUROG3 mRNACTDPMID:35301059
NEUROG3Humancadmium dichloride multiple interactionsEXP 6480464[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of NEUROG3 mRNACTDPMID:35301059
NEUROG3HumanCuprizon decreases expressionISONeurog3 (Rattus norvegicus)6480464Cuprizone results in decreased expression of NEUROG3 mRNACTDPMID:27523638
NEUROG3Humandiazinon increases methylationEXP 6480464Diazinon results in increased methylation of NEUROG3 geneCTDPMID:22964155
NEUROG3Humandisodium selenite increases expressionEXP 6480464Sodium Selenite results in increased expression of NEUROG3 mRNACTDPMID:18175754
NEUROG3Humanethanol affects expressionISONeurog3 (Mus musculus)6480464Ethanol affects the expression of NEUROG3 mRNACTDPMID:22198099

1 to 20 of 35 rows

Biological Process
1 to 20 of 29 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Humanaxon development involved_inIBAFB:FBgn0015550 more ...150520179 GO_CentralGO_REF:0000033
NEUROG3Humancell differentiation involved_inIEAUniProtKB-KW:KW-0221150520179 UniProtGO_REF:0000043
NEUROG3Humancentral nervous system development involved_inTAS 150520179 PMID:9000438PINCPMID:9000438
NEUROG3Humanepithelial cell differentiation acts_upstream_of_or_withinIEAUniProtKB:P70661 and ensembl:ENSMUSP00000054054150520179 EnsemblGO_REF:0000107
NEUROG3Humanforebrain development  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
NEUROG3Humanforebrain development involved_inIEAUniProtKB:F7EPK2 more ...150520179 EnsemblGO_REF:0000107
NEUROG3Humanhindbrain development  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
NEUROG3Humanhindbrain development involved_inIEAUniProtKB:F7EPK2 more ...150520179 EnsemblGO_REF:0000107
NEUROG3Humannegative regulation of transcription by RNA polymerase II involved_inIDA 150520179 PMID:14576336NTNU_SBPMID:14576336
NEUROG3Humannervous system development involved_inIEAUniProtKB-KW:KW-0524150520179 UniProtGO_REF:0000043
NEUROG3Humannervous system development involved_inTAS 150520179 PMID:9000438PINCPMID:9000438
NEUROG3Humanperipheral nervous system development involved_inTAS 150520179 PMID:9000438PINCPMID:9000438
NEUROG3Humanpositive regulation of cell differentiation  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:16514419 and REF_RGD_ID:1641813
NEUROG3Humanpositive regulation of cell differentiation involved_inIEAUniProtKB:F7EPK2 more ...150520179 EnsemblGO_REF:0000107
NEUROG3Humanpositive regulation of DNA-templated transcription involved_inIEAUniProtKB:P70661 and ensembl:ENSMUSP00000054054150520179 EnsemblGO_REF:0000107
NEUROG3Humanpositive regulation of DNA-templated transcription involved_inISSUniProtKB:P70661150520179 UniProtGO_REF:0000024
NEUROG3Humanpositive regulation of neuron differentiation  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9238023 and REF_RGD_ID:1642078
NEUROG3Humanpositive regulation of neuron differentiation involved_inIEAUniProtKB:F7EPK2 more ...150520179 EnsemblGO_REF:0000107
NEUROG3Humanpositive regulation of transcription by RNA polymerase II involved_inIDA 150520179 PMID:16511571UniProtPMID:16511571
NEUROG3Humanpositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinIEAUniProtKB:P70661 and ensembl:ENSMUSP00000054054150520179 EnsemblGO_REF:0000107
1 to 20 of 29 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Humanchromatin located_inISAtfclass:1.2.3150520179 NTNU_SBGO_REF:0000113
NEUROG3Humannucleus located_inIEAUniProtKB:P70661 and ensembl:ENSMUSP00000054054150520179 EnsemblGO_REF:0000107
NEUROG3Humannucleus is_active_inIBAFB:FBgn0010433 more ...150520179 GO_CentralGO_REF:0000033
NEUROG3Humannucleus located_inIDA 150520179 PMID:20807725UniProtPMID:20807725
NEUROG3Humannucleus located_inIEAUniProtKB-KW:KW-0539150520179 UniProtGO_REF:0000043
NEUROG3Humannucleus located_inIEAUniProtKB-SubCell:SL-0191150520179 UniProtGO_REF:0000044

Molecular Function
1 to 20 of 22 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Humanchromatin DNA binding enablesISSUniProtKB:P70661150520179 UniProtGO_REF:0000024
NEUROG3Humanchromatin DNA binding enablesIEAUniProtKB:P70661 and ensembl:ENSMUSP00000054054150520179 EnsemblGO_REF:0000107
NEUROG3HumanDNA binding enablesIEAUniProtKB-KW:KW-0238150520179 UniProtGO_REF:0000043
NEUROG3HumanDNA-binding transcription activator activity, RNA polymerase II-specific  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
NEUROG3HumanDNA-binding transcription activator activity, RNA polymerase II-specific enablesIEAUniProtKB:F7EPK2 more ...150520179 EnsemblGO_REF:0000107
NEUROG3HumanDNA-binding transcription activator activity, RNA polymerase II-specific enablesISSUniProtKB:P70661150520179 UniProtGO_REF:0000024
NEUROG3HumanDNA-binding transcription factor activity enablesIEAUniProtKB:P70661 and ensembl:ENSMUSP00000054054150520179 EnsemblGO_REF:0000107
NEUROG3HumanDNA-binding transcription factor activity, RNA polymerase II-specific enablesISAtfclass:1.2.3150520179 NTNU_SBGO_REF:0000113
NEUROG3HumanDNA-binding transcription factor activity, RNA polymerase II-specific enablesIBAMGI:103239 more ...150520179 GO_CentralGO_REF:0000033
NEUROG3HumanDNA-binding transcription repressor activity, RNA polymerase II-specific enablesIDA 150520179 PMID:14576336NTNU_SBPMID:14576336
NEUROG3Humandouble-stranded DNA binding  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
NEUROG3Humandouble-stranded DNA binding enablesIEAUniProtKB:F7EPK2 more ...150520179 EnsemblGO_REF:0000107
NEUROG3HumanE-box binding enablesIBAMGI:107754 more ...150520179 GO_CentralGO_REF:0000033
NEUROG3Humanprotein binding enablesIPIUniProtKB:Q99081-3150520179 PMID:25910212 and PMID:28514442IntActPMID:25910212 and PMID:28514442
NEUROG3Humanprotein binding enablesIPIUniProtKB:P15884-3 more ...150520179 PMID:32296183IntActPMID:32296183
NEUROG3Humanprotein binding enablesIPIUniProtKB:Q99081150520179 PMID:31515488 and PMID:33961781IntActPMID:31515488 and PMID:33961781
NEUROG3Humanprotein binding enablesIPIUniProtKB:Q04864 and UniProtKB:Q99081150520179 PMID:25416956IntActPMID:25416956
NEUROG3Humanprotein dimerization activity enablesIEAInterPro:IPR011598 and InterPro:IPR036638150520179 InterProGO_REF:0000002
NEUROG3HumanRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesIDA 150520179 PMID:14576336NTNU_SBPMID:14576336
NEUROG3HumanRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISSUniProtKB:P70661150520179 UniProtGO_REF:0000024
1 to 20 of 22 rows

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
NEUROG3Humanmaturity-onset diabetes of the young pathway  IEA 6907045 KEGGhsa:04950

1 to 10 of 10 rows
#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Polymorphic variations in the neurogenic differentiation-1, neurogenin-3, and hepatocyte nuclear factor-1alpha genes contribute to glucose intolerance in a South Indian population. Jackson AE, etal., Diabetes. 2004 Aug;53(8):2122-5.
3. NEUROG3 variants and type 2 diabetes in Italians. Milord E and Gragnoli C, Minerva Med. 2006 Oct;97(5):373-8.
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
9. Islet cell differentiation in liver by combinatorial expression of transcription factors neurogenin-3, BETA2, and RIPE3b1. Song YD, etal., Biochem Biophys Res Commun. 2007 Mar 9;354(2):334-9. Epub 2007 Jan 10.
10. Gene Therapy with Neurogenin 3 and Betacellulin Reverses Major Metabolic Problems in Insulin-Deficient Diabetic Mice. Yechoor V, etal., Endocrinology. 2009 Oct 9.
1 to 10 of 10 rows
PMID:9000438   PMID:10677506   PMID:11206403   PMID:11246894   PMID:11270683   PMID:12403815   PMID:12477932   PMID:14576336   PMID:16511571   PMID:16855267   PMID:16873704   PMID:17922104  
PMID:18072012   PMID:18093211   PMID:18210030   PMID:18461161   PMID:18854154   PMID:19274049   PMID:19307926   PMID:19336475   PMID:19538245   PMID:20668890   PMID:20807725   PMID:21099270  
PMID:21378176   PMID:21739268   PMID:21814221   PMID:21873635   PMID:22266316   PMID:22606327   PMID:23349771   PMID:24134759   PMID:24493854   PMID:24925797   PMID:24969979   PMID:25120094  
PMID:25416956   PMID:25650326   PMID:25910212   PMID:26288179   PMID:26345820   PMID:27068459   PMID:27615127   PMID:27836003   PMID:28402852   PMID:28441528   PMID:28457793   PMID:28514442  
PMID:28940958   PMID:29096722   PMID:31178402   PMID:31341016   PMID:31515488   PMID:31638558   PMID:31805014   PMID:32065490   PMID:32296183   PMID:32694731   PMID:32741144   PMID:33878431  
PMID:33961781   PMID:34352411   PMID:34373451   PMID:34550497   PMID:34566896   PMID:36149814   PMID:37117185  



NEUROG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,571,485 - 69,573,422 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,571,698 - 69,573,422 (-)EnsemblGRCh38hg38GRCh38
GRCh371071,331,454 - 71,333,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361071,001,797 - 71,003,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 341071,001,796 - 71,003,128NCBI
Celera1064,608,651 - 64,610,070 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,321,715 - 65,323,132 (-)NCBIHuRef
CHM1_11071,613,524 - 71,614,943 (-)NCBICHM1_1
T2T-CHM13v2.01070,439,446 - 70,441,420 (-)NCBIT2T-CHM13v2.0
Neurog3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391061,968,869 - 61,970,542 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1061,968,869 - 61,970,542 (+)EnsemblGRCm39 Ensembl
GRCm381062,133,090 - 62,134,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,133,090 - 62,134,763 (+)EnsemblGRCm38mm10GRCm38
MGSCv371061,595,838 - 61,597,511 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361061,528,447 - 61,530,120 (+)NCBIMGSCv36mm8
Celera1063,235,605 - 63,237,278 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.35NCBI
Neurog3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,622,533 - 30,624,015 (+)NCBIGRCr8
mRatBN7.22030,079,780 - 30,081,262 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,079,780 - 30,081,262 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,090,729 - 31,092,211 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,481,622 - 30,483,104 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,224,416 - 31,225,898 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,761,419 - 31,762,893 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,761,405 - 31,762,893 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,556,854 - 33,558,331 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,522,778 - 29,524,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,536,585 - 29,538,061 (+)NCBI
Celera2031,503,365 - 31,504,847 (+)NCBICelera
Cytogenetic Map20q11NCBI
Neurog3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543721,577,896 - 21,578,546 (+)NCBIChiLan1.0ChiLan1.0
NEUROG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2881,720,280 - 81,721,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11081,725,601 - 81,726,624 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01066,039,739 - 66,041,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,571,204 - 68,572,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,571,614 - 68,572,258 (-)Ensemblpanpan1.1panPan2
NEUROG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,654,824 - 20,657,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,656,791 - 20,657,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,784,524 - 20,787,459 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,926,422 - 20,929,357 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,928,319 - 20,928,966 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,825,760 - 20,828,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0421,030,322 - 21,033,256 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,374,244 - 21,377,179 (-)NCBIUU_Cfam_GSD_1.0
Neurog3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,438,787 - 60,440,954 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365218,932,998 - 8,933,645 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365218,932,998 - 8,933,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEUROG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,604,467 - 72,606,360 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11472,604,203 - 72,606,362 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NEUROG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1961,743,562 - 61,746,884 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl961,744,332 - 61,744,979 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604822,483,580 - 22,484,779 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neurog3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247543,817,400 - 3,818,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in NEUROG3
132 total Variants

1 to 10 of 166 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_020999.4(NEUROG3):c.319C>A (p.Arg107Ser) single nucleotide variant Congenital malabsorptive diarrhea 4 [RCV000005648]|NEUROG3-related disorder [RCV003407280] Chr10:69572725 [GRCh38]
Chr10:71332481 [GRCh37]
Chr10:10q22.1
pathogenic|likely pathogenic
NM_020999.4(NEUROG3):c.278G>T (p.Arg93Leu) single nucleotide variant Congenital malabsorptive diarrhea 4 [RCV000005649]|not provided [RCV001851676] Chr10:69572766 [GRCh38]
Chr10:71332522 [GRCh37]
Chr10:10q22.1
pathogenic|likely pathogenic
GRCh38/hg38 10q21.2-22.2(chr10:62229688-74468143)x1 copy number loss See cases [RCV000052530] Chr10:62229688..74468143 [GRCh38]
Chr10:63989447..76227901 [GRCh37]
Chr10:63659453..75897907 [NCBI36]
Chr10:10q21.2-22.2
pathogenic
GRCh38/hg38 10q21.1-22.2(chr10:58436466-74415216)x1 copy number loss See cases [RCV000052511] Chr10:58436466..74415216 [GRCh38]
Chr10:60196226..76174974 [GRCh37]
Chr10:59866232..75844980 [NCBI36]
Chr10:10q21.1-22.2
pathogenic
NM_020999.4(NEUROG3):c.499G>A (p.Gly167Arg) single nucleotide variant not provided [RCV001513798]|not specified [RCV000117779] Chr10:69572545 [GRCh38]
Chr10:69572545..69572546 [GRCh38]
Chr10:71332301 [GRCh37]
Chr10:71332301..71332302 [GRCh37]
Chr10:10q22.1
benign
NM_020999.4(NEUROG3):c.596T>C (p.Phe199Ser) single nucleotide variant Congenital malabsorptive diarrhea 4 [RCV001781451]|not provided [RCV001512137]|not specified [RCV000117780] Chr10:69572448 [GRCh38]
Chr10:71332204 [GRCh37]
Chr10:10q22.1
benign|likely benign|conflicting interpretations of pathogenicity
GRCh38/hg38 10q11.21-22.2(chr10:42685306-73715908)x3 copy number gain See cases [RCV000134848] Chr10:42685306..73715908 [GRCh38]
Chr10:43180754..75475666 [GRCh37]
Chr10:42500760..75145672 [NCBI36]
Chr10:10q11.21-22.2
pathogenic
GRCh38/hg38 10q21.3-22.3(chr10:67196567-79422057)x3 copy number gain See cases [RCV000135438] Chr10:67196567..79422057 [GRCh38]
Chr10:68956325..81181813 [GRCh37]
Chr10:68626331..80851819 [NCBI36]
Chr10:10q21.3-22.3
pathogenic
GRCh38/hg38 10q21.3-22.2(chr10:63402579-75296099)x1 copy number loss See cases [RCV000136658] Chr10:63402579..75296099 [GRCh38]
Chr10:65162339..77055857 [GRCh37]
Chr10:64832345..76725863 [NCBI36]
Chr10:10q21.3-22.2
pathogenic|likely benign
GRCh38/hg38 10q11.23-23.2(chr10:50729367-87147204)x3 copy number gain See cases [RCV000138007] Chr10:50729367..87147204 [GRCh38]
Chr10:52489127..88906961 [GRCh37]
Chr10:52159133..88896941 [NCBI36]
Chr10:10q11.23-23.2
pathogenic
1 to 10 of 166 rows

Predicted Target Of
Summary Value
Count of predictions:1076
Count of miRNA genes:570
Interacting mature miRNAs:623
Transcripts:ENST00000242462
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597034867GWAS1130941_Htype 2 diabetes mellitus QTL GWAS1130941 (human)0.000002type 2 diabetes mellitus106957254569572546Human
596963026GWAS1082545_Htype 2 diabetes mellitus QTL GWAS1082545 (human)6e-10type 2 diabetes mellitus106957254569572546Human
597602488GWAS1659348_Htype 2 diabetes mellitus QTL GWAS1659348 (human)5e-11type 2 diabetes mellitus106957254569572546Human
597270832GWAS1366906_Htype 2 diabetes mellitus QTL GWAS1366906 (human)2e-11type 2 diabetes mellitus106957254569572546Human
597299443GWAS1395517_Htype 2 diabetes mellitus QTL GWAS1395517 (human)6e-10type 2 diabetes mellitus106957254569572546Human
597272965GWAS1369039_Htype 2 diabetes mellitus QTL GWAS1369039 (human)5e-11type 2 diabetes mellitus106957254569572546Human
597057867GWAS1153941_Htype 2 diabetes mellitus QTL GWAS1153941 (human)3e-09type 2 diabetes mellitus106957254569572546Human

NEUROG3_4133  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371071,331,766 - 71,332,416UniSTSGRCh37
Build 361071,001,772 - 71,002,422RGDNCBI36
Celera1064,608,626 - 64,609,276RGD
HuRef1065,321,690 - 65,322,340UniSTS
UniSTS:482136  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371071,332,113 - 71,332,993UniSTSGRCh37
Celera1064,608,973 - 64,609,853UniSTS
HuRef1065,322,037 - 65,322,915UniSTS
UniSTS:490304  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371071,331,979 - 71,333,049UniSTSGRCh37
Celera1064,608,839 - 64,609,909UniSTS
HuRef1065,321,903 - 65,322,971UniSTS
UniSTS:480863  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371071,332,037 - 71,333,034UniSTSGRCh37
Celera1064,608,897 - 64,609,894UniSTS
HuRef1065,321,961 - 65,322,956UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
853 1782 1020 1167 2509 795 1063 164 1085 93 917 3609 3633 5 2116 250 751 879 72


1 to 17 of 17 rows
RefSeq Transcripts NG_021321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF234829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ133776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL450311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC069098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC074938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC074939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC117488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC126468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ904714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 17 of 17 rows

Ensembl Acc Id: ENST00000242462   ⟹   ENSP00000242462
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1069,571,698 - 69,573,422 (-)Ensembl
RefSeq Acc Id: NM_020999   ⟹   NP_066279
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381069,571,698 - 69,573,422 (-)NCBI
GRCh371071,331,791 - 71,333,210 (-)ENTREZGENE
Build 361071,001,797 - 71,003,128 (-)NCBI Archive
HuRef1065,321,715 - 65,323,132 (-)ENTREZGENE
CHM1_11071,613,524 - 71,614,943 (-)NCBI
T2T-CHM13v2.01070,439,696 - 70,441,420 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017016280   ⟹   XP_016871769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381069,571,485 - 69,573,422 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054365966   ⟹   XP_054221941
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01070,439,446 - 70,441,420 (-)NCBI
RefSeq Acc Id: NP_066279   ⟸   NM_020999
- UniProtKB: Q6DJX6 (UniProtKB/Swiss-Prot),   Q5VVI0 (UniProtKB/Swiss-Prot),   Q9BY24 (UniProtKB/Swiss-Prot),   Q9Y4Z2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016871769   ⟸   XM_017016280
- Peptide Label: isoform X1
- UniProtKB: Q6DJX6 (UniProtKB/Swiss-Prot),   Q5VVI0 (UniProtKB/Swiss-Prot),   Q9BY24 (UniProtKB/Swiss-Prot),   Q9Y4Z2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000242462   ⟸   ENST00000242462
RefSeq Acc Id: XP_054221941   ⟸   XM_054365966
- Peptide Label: isoform X1
- UniProtKB: Q9Y4Z2 (UniProtKB/Swiss-Prot),   Q6DJX6 (UniProtKB/Swiss-Prot),   Q5VVI0 (UniProtKB/Swiss-Prot),   Q9BY24 (UniProtKB/Swiss-Prot)
bHLH

Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y4Z2-F1-model_v2 AlphaFold Q9Y4Z2 1-214 view protein structure

RGD ID:7217743
Promoter ID:EPDNEW_H14617
Type:initiation region
Name:NEUROG3_1
Description:neurogenin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381069,573,422 - 69,573,482EPDNEW


1 to 31 of 31 rows
Database
Acc Id
Source(s)
COSMIC NEUROG3 COSMIC
Ensembl Genes ENSG00000122859 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000242462 ENTREZGENE
  ENST00000242462.5 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot
GTEx ENSG00000122859 GTEx
HGNC ID HGNC:13806 ENTREZGENE
Human Proteome Map NEUROG3 Human Proteome Map
InterPro bHLH_dom UniProtKB/Swiss-Prot
  bHLH_transcription_factors UniProtKB/Swiss-Prot
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot
  Ngn3 UniProtKB/Swiss-Prot
KEGG Report hsa:50674 UniProtKB/Swiss-Prot
NCBI Gene 50674 ENTREZGENE
OMIM 604882 OMIM
PANTHER BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED UniProtKB/Swiss-Prot
  PTHR19290:SF94 UniProtKB/Swiss-Prot
Pfam HLH UniProtKB/Swiss-Prot
PharmGKB PA31571 PharmGKB
PROSITE BHLH UniProtKB/Swiss-Prot
SMART HLH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot
UniProt E0X9P2_HUMAN UniProtKB/TrEMBL
  NGN3_HUMAN UniProtKB/Swiss-Prot
  Q5VVI0 ENTREZGENE
  Q6DJX6 ENTREZGENE
  Q9BY24 ENTREZGENE
  Q9Y4Z2 ENTREZGENE
UniProt Secondary Q5VVI0 UniProtKB/Swiss-Prot
  Q6DJX6 UniProtKB/Swiss-Prot
  Q9BY24 UniProtKB/Swiss-Prot
1 to 31 of 31 rows