GWAS1082545_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS1082545_H (type 2 diabetes mellitus QTL GWAS1082545 (human)) Homo sapiens

Symbol: GWAS1082545_H
Name: type 2 diabetes mellitus QTL GWAS1082545 (human)
RGD ID: 596963026
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 6.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381069,572,545 - 69,572,546RGD_MAPPER_PIPELINEGRCh38
GRCh371071,332,301 - 71,332,302RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1344822NEUROG3neurogenin 3106957148569573422Human


Peak: (rs41277236)
Human AssemblyChrPosition (strand)Source
GRCh381069,572,545 - 69,572,546RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597034867GWAS1130941_Htype 2 diabetes mellitus QTL GWAS1130941 (human)0.000002type 2 diabetes mellitus106957254569572546Human
596963026GWAS1082545_Htype 2 diabetes mellitus QTL GWAS1082545 (human)6e-10type 2 diabetes mellitus106957254569572546Human
597602488GWAS1659348_Htype 2 diabetes mellitus QTL GWAS1659348 (human)5e-11type 2 diabetes mellitus106957254569572546Human
597270832GWAS1366906_Htype 2 diabetes mellitus QTL GWAS1366906 (human)2e-11type 2 diabetes mellitus106957254569572546Human
597299443GWAS1395517_Htype 2 diabetes mellitus QTL GWAS1395517 (human)6e-10type 2 diabetes mellitus106957254569572546Human
597272965GWAS1369039_Htype 2 diabetes mellitus QTL GWAS1369039 (human)5e-11type 2 diabetes mellitus106957254569572546Human
597057867GWAS1153941_Htype 2 diabetes mellitus QTL GWAS1153941 (human)3e-09type 2 diabetes mellitus106957254569572546Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1130941_H GCST009379 Type 2 diabetes 74,124 European ancestry cases, 824,006 European ancestry controls T 0.0431 0.000002 5.699 rs41277236 1.09 PMID:30297969
GWAS1153941_H GCST007077 Type 2 diabetes approximately 459,000 European ancestry individuals ? NR 3E-9 8.523 rs41277236 N/A PMID:30595370
GWAS1659348_H GCST90492734 Type 2 diabetes 50,251 African American cases, 103,909 African American controls, 88,109 East Asian ancestry cases, 339,395 East Asian ancestry controls, 242,283 European ancestry cases, 1,569,734 European ancestry controls, 29,375 Hispanic cases, 59,368 Hispanic controls, 1,602 South African ancestry cases, 976 South African ancestry controls, 16,832 South Asian ancestry cases, 33,767 South Asian ancestry controls T 0.03667 5E-11 10.302 rs41277236 N/A PMID:38374256
GWAS1366906_H GCST90132184 Type 2 diabetes 251,740 European ancestry individuals T 0.043 2E-11 10.699 rs41277236 0.112 PMID:35551307
GWAS1369039_H GCST90132183 Type 2 diabetes 251,740 European ancestry individuals, 139,705 East Asian ancestry individuals, 40,737 South Asian ancestry individuals, 27,417 Hispanic individuals, 30,167 African American individuals, 2,426 Zulu ancestry individuals T NR 5E-11 10.302 rs41277236 1.11 PMID:35551307
GWAS1395517_H GCST90444202 Type 2 diabetes 51,256 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry cases, 370,487 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry controls C 0.955085 6E-10 9.222 rs41277236 0.1171 PMID:39379762
Database
Acc Id
Source(s)
GWAS Catalog GCST90444202 GWAS Catalog

Note Type Note Reference