Neurog3 (neurogenin 3) - Rat Genome Database

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Gene: Neurog3 (neurogenin 3) Chinchilla lanigera
Analyze
Symbol: Neurog3
Name: neurogenin 3
RGD ID: 9016817
Description: ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); forebrain development (ortholog); hindbrain development (ortholog); ASSOCIATED WITH congenital malabsorptive diarrhea 4 (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: neurogenin-3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543721,577,896 - 21,578,546 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neurog3ChinchillaExperimental Diabetes Mellitus  ISONeurog3 (Mus musculus)9068941 RGDPMID:19819964 and REF_RGD_ID:2313774
Neurog3Chinchillaglucose intolerance susceptibilityISONEUROG3 (Homo sapiens)9068941DNA:polymorphism:cds:p.S199FRGDPMID:15277395 and REF_RGD_ID:1601481
Neurog3Chinchillahyperglycemia  ISONeurog3 (Mus musculus)9068941associated with Diabetes Mellitus and ExperimentalRGDPMID:17239820 and REF_RGD_ID:1642077
Neurog3Chinchillatype 2 diabetes mellitus  ISONEUROG3 (Homo sapiens)9068941 RGDPMID:17146417 and REF_RGD_ID:2313775
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neurog3Chinchillacongenital malabsorptive diarrhea 4  ISONEUROG3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:16855267 more ...
Neurog3Chinchillagenetic disease  ISONEUROG3 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neurog3Chinchillacongenital malabsorptive diarrhea 4  ISONEUROG3 (Homo sapiens)7240710 OMIM 


Biological Process
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neurog3Chinchillaepithelial cell differentiation acts_upstream_of_or_withinISOMGI:26513949068941 PMID:12080087MGIPMID:12080087
Neurog3Chinchillaforebrain development  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
Neurog3Chinchillahindbrain development  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
Neurog3Chinchillanegative regulation of transcription by RNA polymerase II involved_inISONEUROG3 (Homo sapiens)9068941 PMID:14576336NTNU_SBPMID:14576336
Neurog3Chinchillapositive regulation of cell differentiation  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:16514419 and REF_RGD_ID:1641813
Neurog3Chinchillapositive regulation of DNA-templated transcription involved_inISONeurog3 (Mus musculus)9068941 PMID:19759004GO_CentralPMID:19759004
Neurog3Chinchillapositive regulation of neuron differentiation  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9238023 and REF_RGD_ID:1642078
Neurog3Chinchillapositive regulation of transcription by RNA polymerase II acts_upstream_of_or_withinISONeurog3 (Mus musculus)9068941 PMID:16511571MGIPMID:16511571
Neurog3Chinchillapositive regulation of transcription by RNA polymerase II involved_inISONEUROG3 (Homo sapiens)9068941 PMID:16511571UniProtPMID:16511571
Neurog3Chinchillaregulation of dendrite morphogenesis acts_upstream_of_or_withinISOMGI:1018159068941 PMID:21818269MGIPMID:21818269
Neurog3Chinchillaregulation of DNA-templated transcription  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
Neurog3Chinchillaspinal cord development  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
Neurog3Chinchillatransdifferentiation involved_inISONeurog3 (Mus musculus)9068941 PMID:16511571UniProtPMID:16511571
1 to 13 of 13 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neurog3Chinchillanucleus located_inISONEUROG3 (Homo sapiens)9068941 PMID:20807725UniProtPMID:20807725
Neurog3Chinchillanucleus located_inISONeurog3 (Mus musculus)9068941 PMID:12921743 and PMID:17928203MGIPMID:12921743 and PMID:17928203

Molecular Function
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Neurog3Chinchillachromatin DNA binding enablesISONeurog3 (Mus musculus)9068941 PMID:16511571UniProtPMID:16511571
Neurog3ChinchillaDNA-binding transcription activator activity, RNA polymerase II-specific  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
Neurog3ChinchillaDNA-binding transcription activator activity, RNA polymerase II-specific enablesISONeurog3 (Mus musculus)9068941 PMID:19759004GO_CentralPMID:19759004
Neurog3ChinchillaDNA-binding transcription factor activity enablesISONeurog3 (Mus musculus)9068941 PMID:16511571MGIPMID:16511571
Neurog3ChinchillaDNA-binding transcription repressor activity, RNA polymerase II-specific enablesISONEUROG3 (Homo sapiens)9068941 PMID:14576336NTNU_SBPMID:14576336
Neurog3Chinchilladouble-stranded DNA binding  ISONeurog3 (Rattus norvegicus)9068941 RGDPMID:9130143 and REF_RGD_ID:633362
Neurog3Chinchillaprotein binding enablesISOUniProtKB:Q990819068941 PMID:31515488 and PMID:33961781IntActPMID:31515488 and PMID:33961781
Neurog3Chinchillaprotein binding enablesISOUniProtKB:Q99081-39068941 PMID:25910212 and PMID:28514442IntActPMID:25910212 and PMID:28514442
Neurog3Chinchillaprotein binding enablesISOUniProtKB:Q04864 and UniProtKB:Q990819068941 PMID:25416956IntActPMID:25416956
Neurog3Chinchillaprotein binding enablesISOUniProtKB:P15884-3 more ...9068941 PMID:32296183IntActPMID:32296183
Neurog3Chinchillaprotein binding enablesISOUniProtKB:Q99NA29068941 PMID:18560595UniProtPMID:18560595
Neurog3ChinchillaRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISONEUROG3 (Homo sapiens)9068941 PMID:14576336NTNU_SBPMID:14576336
Neurog3ChinchillaRNA polymerase II cis-regulatory region sequence-specific DNA binding enablesISONeurog3 (Mus musculus)9068941 PMID:16511571UniProtPMID:16511571
1 to 13 of 13 rows


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
PMID:22301074  



Neurog3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543721,577,896 - 21,578,546 (+)NCBIChiLan1.0ChiLan1.0
NEUROG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,571,485 - 69,573,422 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,571,698 - 69,573,422 (-)EnsemblGRCh38hg38GRCh38
GRCh371071,331,454 - 71,333,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361071,001,797 - 71,003,128 (-)NCBINCBI36Build 36hg18NCBI36
Build 341071,001,796 - 71,003,128NCBI
Celera1064,608,651 - 64,610,070 (-)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,321,715 - 65,323,132 (-)NCBIHuRef
CHM1_11071,613,524 - 71,614,943 (-)NCBICHM1_1
T2T-CHM13v2.01070,439,446 - 70,441,420 (-)NCBIT2T-CHM13v2.0
Neurog3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391061,968,869 - 61,970,542 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1061,968,869 - 61,970,542 (+)EnsemblGRCm39 Ensembl
GRCm381062,133,090 - 62,134,763 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,133,090 - 62,134,763 (+)EnsemblGRCm38mm10GRCm38
MGSCv371061,595,838 - 61,597,511 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361061,528,447 - 61,530,120 (+)NCBIMGSCv36mm8
Celera1063,235,605 - 63,237,278 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.35NCBI
Neurog3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,622,533 - 30,624,015 (+)NCBIGRCr8
mRatBN7.22030,079,780 - 30,081,262 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,079,780 - 30,081,262 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,090,729 - 31,092,211 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,481,622 - 30,483,104 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,224,416 - 31,225,898 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,761,419 - 31,762,893 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,761,405 - 31,762,893 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,556,854 - 33,558,331 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,522,778 - 29,524,261 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,536,585 - 29,538,061 (+)NCBI
Celera2031,503,365 - 31,504,847 (+)NCBICelera
Cytogenetic Map20q11NCBI
NEUROG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2881,720,280 - 81,721,303 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11081,725,601 - 81,726,624 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01066,039,739 - 66,041,804 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,571,204 - 68,572,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,571,614 - 68,572,258 (-)Ensemblpanpan1.1panPan2
NEUROG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,654,824 - 20,657,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,656,791 - 20,657,438 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,784,524 - 20,787,459 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,926,422 - 20,929,357 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,928,319 - 20,928,966 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,825,760 - 20,828,692 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0421,030,322 - 21,033,256 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,374,244 - 21,377,179 (-)NCBIUU_Cfam_GSD_1.0
Neurog3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,438,787 - 60,440,954 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365218,932,998 - 8,933,645 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365218,932,998 - 8,933,645 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NEUROG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,604,467 - 72,606,360 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11472,604,203 - 72,606,362 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NEUROG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1961,743,562 - 61,746,884 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl961,744,332 - 61,744,979 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604822,483,580 - 22,484,779 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Neurog3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247543,817,400 - 3,818,047 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.
RefSeq Transcripts XM_005390082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01034911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005390082   ⟹   XP_005390139
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543721,577,896 - 21,578,546 (+)NCBI
Sequence:
Protein RefSeqs XP_005390139 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005390139   ⟸   XM_005390082
- Sequence:



Database
Acc Id
Source(s)
NCBI Gene Neurog3 ENTREZGENE