RANBP10 (RAN binding protein 10) - Rat Genome Database

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Gene: RANBP10 (RAN binding protein 10) Homo sapiens
Analyze
Symbol: RANBP10
Name: RAN binding protein 10
RGD ID: 1343804
HGNC Page HGNC:29285
Description: Predicted to enable beta-tubulin binding activity; guanyl-nucleotide exchange factor activity; and small GTPase binding activity. Predicted to be involved in cytoskeleton organization. Predicted to act upstream of or within microtubule cytoskeleton organization. Part of ubiquitin ligase complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ31165; KIAA1464; ran-binding protein 10
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,723,070 - 67,806,560 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,723,070 - 67,806,560 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,756,973 - 67,840,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,314,506 - 66,398,056 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,314,505 - 66,398,056NCBI
Celera1652,265,494 - 52,348,990 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,629,898 - 53,712,872 (-)NCBIHuRef
CHM1_11669,164,739 - 69,248,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10819331   PMID:12421765   PMID:12477932   PMID:14684163   PMID:14702039   PMID:16498413   PMID:18347012   PMID:19953087   PMID:20395553   PMID:20580816   PMID:21873635   PMID:22939629  
PMID:23022380   PMID:23667531   PMID:24981860   PMID:25056061   PMID:25544563   PMID:26186194   PMID:26344197   PMID:26496610   PMID:26739050   PMID:26972000   PMID:27173435   PMID:27432908  
PMID:28514442   PMID:28675297   PMID:28744327   PMID:29229926   PMID:29911972   PMID:29987050   PMID:30554943   PMID:30833792   PMID:31059266   PMID:31091453   PMID:31980649   PMID:32235678  
PMID:32239614   PMID:32296183   PMID:32807901   PMID:33060197   PMID:33187986   PMID:33961781   PMID:33974675   PMID:34383978   PMID:34671019   PMID:34728620   PMID:35256949   PMID:35271311  
PMID:35563538   PMID:35748872   PMID:35833506   PMID:36398662   PMID:37071682   PMID:37314216   PMID:37689310   PMID:38113892   PMID:38496616  


Genomics

Comparative Map Data
RANBP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,723,070 - 67,806,560 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,723,070 - 67,806,560 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,756,973 - 67,840,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,314,506 - 66,398,056 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,314,505 - 66,398,056NCBI
Celera1652,265,494 - 52,348,990 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,629,898 - 53,712,872 (-)NCBIHuRef
CHM1_11669,164,739 - 69,248,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBIT2T-CHM13v2.0
Ranbp10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,494,940 - 106,560,463 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,494,940 - 106,553,982 (-)EnsemblGRCm39 Ensembl
GRCm388105,768,308 - 105,833,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,768,308 - 105,827,350 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,292,208 - 108,351,250 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,657,437 - 108,716,479 (-)NCBIMGSCv36mm8
Celera8109,995,909 - 110,055,026 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Ranbp10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,565,924 - 50,626,720 (-)NCBIGRCr8
mRatBN7.21933,656,046 - 33,716,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,656,046 - 33,717,033 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,471,601 - 40,532,237 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,124,941 - 41,185,558 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,422,953 - 43,483,501 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,734,662 - 37,795,360 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,734,599 - 37,796,089 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,600,923 - 48,662,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,601,078 - 35,661,711 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,605,962 - 35,666,720 (-)NCBI
Celera1933,083,963 - 33,144,447 (-)NCBICelera
Cytogenetic Map19q12NCBI
Ranbp10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,889,349 - 8,960,122 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,889,349 - 8,960,122 (+)NCBIChiLan1.0ChiLan1.0
RANBP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,256,401 - 77,333,749 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,167,842 - 83,244,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,071,095 - 48,148,105 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,460,311 - 67,536,849 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,460,311 - 67,536,892 (-)Ensemblpanpan1.1panPan2
RANBP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,662,034 - 81,736,269 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,662,172 - 81,732,838 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,651,465 - 81,726,027 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,096,823 - 82,171,448 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,097,269 - 82,169,937 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,923,236 - 81,997,800 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,604,817 - 81,679,338 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,247,311 - 82,321,888 (+)NCBIUU_Cfam_GSD_1.0
Ranbp10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,403,560 - 41,468,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,117,685 - 18,185,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,117,532 - 18,185,531 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,352,003 - 28,428,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,352,001 - 28,428,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,704,602 - 25,780,693 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,631,308 - 59,711,098 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604722,359,168 - 22,440,010 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,558,468 - 18,629,824 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,558,660 - 18,629,132 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RANBP10
48 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16q13-22.2(chr16:56883592-71279975)x3 copy number gain See cases [RCV000052405] Chr16:56883592..71279975 [GRCh38]
Chr16:56917504..71313878 [GRCh37]
Chr16:55475005..69871379 [NCBI36]
Chr16:16q13-22.2		 pathogenic
GRCh38/hg38 16q21-23.1(chr16:58456122-74708723)x3 copy number gain See cases [RCV000052408] Chr16:58456122..74708723 [GRCh38]
Chr16:58490026..74742621 [GRCh37]
Chr16:57047527..73300122 [NCBI36]
Chr16:16q21-23.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 copy number gain See cases [RCV000052421] Chr16:65313395..90081985 [GRCh38]
Chr16:65347298..90148393 [GRCh37]
Chr16:63904799..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:62179331-67770414)x1 copy number loss See cases [RCV000053333] Chr16:62179331..67770414 [GRCh38]
Chr16:62213235..67804317 [GRCh37]
Chr16:60770736..66361818 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:63318997-70555249)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053334]|See cases [RCV000053334] Chr16:63318997..70555249 [GRCh38]
Chr16:63352901..70589152 [GRCh37]
Chr16:61910402..69146653 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q21-22.1(chr16:64311275-68062011)x1 copy number loss See cases [RCV000053335] Chr16:64311275..68062011 [GRCh38]
Chr16:64345179..68095914 [GRCh37]
Chr16:62902680..66653415 [NCBI36]
Chr16:16q21-22.1		 pathogenic
GRCh38/hg38 16q22.1(chr16:66694180-67865445)x1 copy number loss See cases [RCV000053336] Chr16:66694180..67865445 [GRCh38]
Chr16:66728083..67899348 [GRCh37]
Chr16:65285584..66456849 [NCBI36]
Chr16:16q22.1		 pathogenic
NM_020850.1(RANBP10):c.777-1G>A single nucleotide variant Malignant melanoma [RCV000071185] Chr16:67731585 [GRCh38]
Chr16:67765488 [GRCh37]
Chr16:66322989 [NCBI36]
Chr16:16q22.1		 not provided
GRCh38/hg38 16q21-24.1(chr16:62925929-84585795)x3 copy number gain See cases [RCV000135863] Chr16:62925929..84585795 [GRCh38]
Chr16:62959833..84619401 [GRCh37]
Chr16:61517334..83176902 [NCBI36]
Chr16:16q21-24.1		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65511483-90096995)x3 copy number gain See cases [RCV000139426] Chr16:65511483..90096995 [GRCh38]
Chr16:65545386..90163403 [GRCh37]
Chr16:64102887..88690904 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:64389378-90081985)x3 copy number gain See cases [RCV000142578] Chr16:64389378..90081985 [GRCh38]
Chr16:64423281..90148393 [GRCh37]
Chr16:62980782..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic|likely pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3		 pathogenic
GRCh38/hg38 16q12.1-22.1(chr16:49685521-68401712)x3 copy number gain See cases [RCV000143752] Chr16:49685521..68401712 [GRCh38]
Chr16:49719432..68435615 [GRCh37]
Chr16:48276933..66993116 [NCBI36]
Chr16:16q12.1-22.1		 pathogenic
GRCh38/hg38 16q21-23.3(chr16:65957829-83611443)x3 copy number gain See cases [RCV000143742] Chr16:65957829..83611443 [GRCh38]
Chr16:65991732..83645048 [GRCh37]
Chr16:64549233..82202549 [NCBI36]
Chr16:16q21-23.3		 pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46615804-90142285)x1 copy number loss Breast ductal adenocarcinoma [RCV000207138] Chr16:46615804..90142285 [GRCh37]
Chr16:16q11.2-24.3		 uncertain significance
GRCh37/hg19 16q12.2-22.2(chr16:55359026-70884455)x1 copy number loss Breast ductal adenocarcinoma [RCV000207067] Chr16:55359026..70884455 [GRCh37]
Chr16:16q12.2-22.2		 likely pathogenic|uncertain significance
Single allele complex Breast ductal adenocarcinoma [RCV000207314] Chr16:56368689..90141355 [GRCh37]
Chr16:16q12.2-24.3		 uncertain significance
GRCh37/hg19 16q22.1(chr16:67654566-68404073)x1 copy number loss See cases [RCV000449234] Chr16:67654566..68404073 [GRCh37]
Chr16:16q22.1		 likely pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46464488-90155062)x3 copy number gain See cases [RCV000446110] Chr16:46464488..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46497599-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626429] Chr16:46497599..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
NM_020850.3(RANBP10):c.1108C>T (p.Pro370Ser) single nucleotide variant not specified [RCV004319205] Chr16:67729719 [GRCh38]
Chr16:67763622 [GRCh37]
Chr16:16q22.1		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46455960-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626435] Chr16:46455960..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
GRCh37/hg19 16q13-24.3(chr16:57051473-89797669)x3 copy number gain See cases [RCV000512511] Chr16:57051473..89797669 [GRCh37]
Chr16:16q13-24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q12.2-22.2(chr16:54416050-72453266)x3 copy number gain not provided [RCV000683820] Chr16:54416050..72453266 [GRCh37]
Chr16:16q12.2-22.2		 pathogenic
GRCh37/hg19 16q22.1(chr16:67629575-67812055)x1 copy number loss not provided [RCV000683825] Chr16:67629575..67812055 [GRCh37]
Chr16:16q22.1		 likely pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
NM_020850.3(RANBP10):c.1032G>A (p.Thr344=) single nucleotide variant not provided [RCV000959944] Chr16:67729795 [GRCh38]
Chr16:67763698 [GRCh37]
Chr16:16q22.1		 benign
NM_020850.3(RANBP10):c.174C>T (p.Ser58=) single nucleotide variant not provided [RCV000949389] Chr16:67806363 [GRCh38]
Chr16:67840266 [GRCh37]
Chr16:16q22.1		 benign
GRCh37/hg19 16q22.1(chr16:67132790-68166320) copy number loss not provided [RCV000767617] Chr16:67132790..68166320 [GRCh37]
Chr16:16q22.1		 pathogenic
NM_020850.3(RANBP10):c.1180G>A (p.Ala394Thr) single nucleotide variant Marfanoid habitus and intellectual disability [RCV000850431] Chr16:67729452 [GRCh38]
Chr16:67763355 [GRCh37]
Chr16:16q22.1		 uncertain significance
GRCh37/hg19 16q21-22.1(chr16:65669673-70180183)x1 copy number loss not provided [RCV001006797] Chr16:65669673..70180183 [GRCh37]
Chr16:16q21-22.1		 pathogenic
GRCh37/hg19 16q21-24.3(chr16:61524229-90155062)x3 copy number gain not provided [RCV001249359] Chr16:61524229..90155062 [GRCh37]
Chr16:16q21-24.3		 not provided
NM_020850.3(RANBP10):c.443A>T (p.His148Leu) single nucleotide variant not specified [RCV004308486] Chr16:67744413 [GRCh38]
Chr16:67778316 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.226C>T (p.His76Tyr) single nucleotide variant not specified [RCV004302950] Chr16:67806311 [GRCh38]
Chr16:67840214 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.848C>G (p.Thr283Ser) single nucleotide variant not specified [RCV004288994] Chr16:67731513 [GRCh38]
Chr16:67765416 [GRCh37]
Chr16:16q22.1		 uncertain significance
GRCh37/hg19 16q22.1(chr16:67765964-68246270)x1 copy number loss not provided [RCV001259860] Chr16:67765964..68246270 [GRCh37]
Chr16:16q22.1		 uncertain significance
Single allele deletion Chromosome 16q22 deletion syndrome [RCV001523792] Chr16:67628846..67813408 [GRCh37]
Chr16:16q22.1		 pathogenic
NC_000016.9:g.(?_66545871)_(72146396_?)dup duplication Dyskeratosis congenita, autosomal dominant 6 [RCV001900384]|Immunodeficiency [RCV001900385]|not provided [RCV001900386] Chr16:66545871..72146396 [GRCh37]
Chr16:16q21-22.2		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46503968-90155062)x3 copy number gain not provided [RCV002221458] Chr16:46503968..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
NC_000016.9:g.(?_65821800)_(72146396_?)del deletion Dyskeratosis congenita, autosomal dominant 6 [RCV003122496] Chr16:65821800..72146396 [GRCh37]
Chr16:16q21-22.2		 uncertain significance
NM_020850.3(RANBP10):c.1646C>T (p.Ser549Leu) single nucleotide variant not specified [RCV004313556] Chr16:67727413 [GRCh38]
Chr16:67761316 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1304A>T (p.Asp435Val) single nucleotide variant not specified [RCV004204044] Chr16:67729328 [GRCh38]
Chr16:67763231 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.83C>G (p.Pro28Arg) single nucleotide variant not specified [RCV004212848] Chr16:67806454 [GRCh38]
Chr16:67840357 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.49G>A (p.Asp17Asn) single nucleotide variant not specified [RCV004123871] Chr16:67806488 [GRCh38]
Chr16:67840391 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.23C>T (p.Pro8Leu) single nucleotide variant not specified [RCV004242129] Chr16:67806514 [GRCh38]
Chr16:67840417 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.383A>G (p.Asn128Ser) single nucleotide variant not specified [RCV004120662] Chr16:67772051 [GRCh38]
Chr16:67805954 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1267C>A (p.Pro423Thr) single nucleotide variant not specified [RCV004107610] Chr16:67729365 [GRCh38]
Chr16:67763268 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.745C>T (p.Arg249Trp) single nucleotide variant not specified [RCV004239506] Chr16:67734889 [GRCh38]
Chr16:67768792 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1049G>A (p.Ser350Asn) single nucleotide variant not specified [RCV004603418] Chr16:67729778 [GRCh38]
Chr16:67763681 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.547A>G (p.Thr183Ala) single nucleotide variant not specified [RCV004154473] Chr16:67744309 [GRCh38]
Chr16:67778212 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.947G>A (p.Arg316His) single nucleotide variant not specified [RCV004181771] Chr16:67729989 [GRCh38]
Chr16:67763892 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1061G>A (p.Arg354Gln) single nucleotide variant not specified [RCV004236216] Chr16:67729766 [GRCh38]
Chr16:67763669 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.713A>G (p.Gln238Arg) single nucleotide variant not specified [RCV004087170] Chr16:67734921 [GRCh38]
Chr16:67768824 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.593C>T (p.Ala198Val) single nucleotide variant not specified [RCV004275992] Chr16:67735041 [GRCh38]
Chr16:67768944 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.868G>T (p.Ala290Ser) single nucleotide variant not specified [RCV004257893] Chr16:67731493 [GRCh38]
Chr16:67765396 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.659A>G (p.Gln220Arg) single nucleotide variant not specified [RCV004280310] Chr16:67734975 [GRCh38]
Chr16:67768878 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1736C>T (p.Ser579Phe) single nucleotide variant not specified [RCV004259198] Chr16:67726555 [GRCh38]
Chr16:67760458 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1031C>T (p.Thr344Met) single nucleotide variant not specified [RCV004258454] Chr16:67729796 [GRCh38]
Chr16:67763699 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1579C>T (p.Arg527Trp) single nucleotide variant not specified [RCV004309218] Chr16:67727792 [GRCh38]
Chr16:67761695 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1072T>C (p.Ser358Pro) single nucleotide variant not specified [RCV004361440] Chr16:67729755 [GRCh38]
Chr16:67763658 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1585T>C (p.Tyr529His) single nucleotide variant not specified [RCV004336819] Chr16:67727786 [GRCh38]
Chr16:67761689 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.916C>T (p.Arg306Cys) single nucleotide variant not specified [RCV004344858] Chr16:67730020 [GRCh38]
Chr16:67763923 [GRCh37]
Chr16:16q22.1		 uncertain significance
GRCh37/hg19 16q22.1(chr16:67498380-68754276)x3 copy number gain not provided [RCV003485117] Chr16:67498380..68754276 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1239G>C (p.Ser413=) single nucleotide variant not provided [RCV003411372] Chr16:67729393 [GRCh38]
Chr16:67763296 [GRCh37]
Chr16:16q22.1		 likely benign
NM_020850.3(RANBP10):c.522C>T (p.Asn174=) single nucleotide variant not provided [RCV003426746] Chr16:67744334 [GRCh38]
Chr16:67778237 [GRCh37]
Chr16:16q22.1		 likely benign
GRCh37/hg19 16q22.1(chr16:67583728-69977397)x3 copy number gain not specified [RCV003987175] Chr16:67583728..69977397 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1058C>T (p.Ser353Phe) single nucleotide variant not specified [RCV004445751] Chr16:67729769 [GRCh38]
Chr16:67763672 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1353C>T (p.Ser451=) single nucleotide variant not specified [RCV004445752] Chr16:67728511 [GRCh38]
Chr16:67762414 [GRCh37]
Chr16:16q22.1		 likely benign
NM_020850.3(RANBP10):c.1493G>A (p.Arg498Gln) single nucleotide variant not specified [RCV004445753] Chr16:67727878 [GRCh38]
Chr16:67761781 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1504G>A (p.Gly502Arg) single nucleotide variant not specified [RCV004445755] Chr16:67727867 [GRCh38]
Chr16:67761770 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.676A>G (p.Ile226Val) single nucleotide variant not specified [RCV004445756] Chr16:67734958 [GRCh38]
Chr16:67768861 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.796G>A (p.Val266Met) single nucleotide variant not specified [RCV004445757] Chr16:67731565 [GRCh38]
Chr16:67765468 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.14C>T (p.Thr5Met) single nucleotide variant not specified [RCV004445754] Chr16:67806523 [GRCh38]
Chr16:67840426 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1046G>A (p.Arg349Gln) single nucleotide variant not specified [RCV004445750] Chr16:67729781 [GRCh38]
Chr16:67763684 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.590C>T (p.Pro197Leu) single nucleotide variant not specified [RCV004665401] Chr16:67738014 [GRCh38]
Chr16:67771917 [GRCh37]
Chr16:16q22.1		 uncertain significance
NM_020850.3(RANBP10):c.1064G>A (p.Ser355Asn) single nucleotide variant not specified [RCV004665402] Chr16:67729763 [GRCh38]
Chr16:67763666 [GRCh37]
Chr16:16q22.1		 uncertain significance
NC_000016.9:g.(?_48799549)_(70756330_?)dup duplication Chromosome 16q12 duplication syndrome [RCV004595820] Chr16:48799549..70756330 [GRCh37]
Chr16:16q12.1-22.1		 likely pathogenic
NM_020850.3(RANBP10):c.13A>G (p.Thr5Ala) single nucleotide variant not specified [RCV004665400] Chr16:67806524 [GRCh38]
Chr16:67840427 [GRCh37]
Chr16:16q22.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5732
Count of miRNA genes:1235
Interacting mature miRNAs:1568
Transcripts:ENST00000317506, ENST00000411657, ENST00000425512, ENST00000448631, ENST00000536251, ENST00000602506, ENST00000602525, ENST00000602638, ENST00000602677, ENST00000602815, ENST00000602887
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406978882GWAS627858_Hhemoglobin measurement QTL GWAS627858 (human)6e-28hemoglobin measurementhemoglobin measurement (CMO:0000508)166779563467795635Human
407311236GWAS960212_Hhemoglobin measurement QTL GWAS960212 (human)1e-20hemoglobin measurementhemoglobin measurement (CMO:0000508)166777768767777688Human
407127680GWAS776656_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS776656 (human)1e-19total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166777813667778137Human
407126785GWAS775761_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS775761 (human)6e-18esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166777813667778137Human
407090052GWAS739028_Hcholesterol esters in large HDL measurement QTL GWAS739028 (human)7e-19cholesterol esters in large HDL measurement166779572467795725Human
407065220GWAS714196_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS714196 (human)1e-24total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166780264967802650Human
407125645GWAS774621_Htriglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS774621 (human)1e-19triglycerides:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166780264967802650Human
407044879GWAS693855_Hchronic obstructive pulmonary disease QTL GWAS693855 (human)8e-12chronic obstructive pulmonary disease166774281367742814Human
407339336GWAS988312_Hlymphocyte count QTL GWAS988312 (human)1e-16lymphocyte countblood lymphocyte count (CMO:0000031)166779417567794176Human
407241929GWAS890905_Hbody height QTL GWAS890905 (human)3e-09body height (VT:0001253)body height (CMO:0000106)166780068267800683Human
407135317GWAS784293_Hhigh density lipoprotein cholesterol measurement QTL GWAS784293 (human)2e-19high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166777813667778137Human
407061974GWAS710950_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS710950 (human)1e-25total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166780264967802650Human
406889431GWAS538407_Hhigh density lipoprotein cholesterol measurement QTL GWAS538407 (human)3e-38high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166777768767777688Human
406889432GWAS538408_Hhigh density lipoprotein cholesterol measurement QTL GWAS538408 (human)1e-45high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166777768767777688Human
406967064GWAS616040_Hhemoglobin measurement QTL GWAS616040 (human)2e-11hemoglobin measurementhemoglobin measurement (CMO:0000508)166779586067795861Human
407120863GWAS769839_Htriglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS769839 (human)5e-16triglycerides:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166780264967802650Human
406954463GWAS603439_Hhematocrit QTL GWAS603439 (human)4e-11hematocrithematocrit (CMO:0000037)166779586067795861Human
407085148GWAS734124_Htotal cholesterol change measurement, high density lipoprotein cholesterol measurement QTL GWAS734124 (human)4e-19total cholesterol change measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166779572467795725Human
407091171GWAS740147_Hfree cholesterol in large HDL measurement QTL GWAS740147 (human)1e-19free cholesterol in large HDL measurementblood high density lipoprotein cholesterol level (CMO:0000052)166779572467795725Human
407074146GWAS723122_Hempathy measurement QTL GWAS723122 (human)0.0000009empathy measurement166776367267763673Human
407046882GWAS695858_Hsexual dimorphism measurement QTL GWAS695858 (human)2e-09sexual dimorphism measurement166779926867799269Human
407322341GWAS971317_Hhematocrit QTL GWAS971317 (human)4e-21hematocrithematocrit (CMO:0000037)166777813667778137Human
407244128GWAS893104_Hplatelet-to-lymphocyte ratio QTL GWAS893104 (human)1e-19platelet-to-lymphocyte ratio166779417567794176Human
407085348GWAS734324_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS734324 (human)1e-14esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166780264967802650Human
407083620GWAS732596_Hfree cholesterol in medium HDL measurement QTL GWAS732596 (human)1e-10free cholesterol in medium HDL measurement 166780264967802650Human
406913769GWAS562745_Hdiastolic blood pressure, systolic blood pressure QTL GWAS562745 (human)7e-09diastolic blood pressure, systolic blood pressuresystolic blood pressure (CMO:0000004)166780264967802650Human
406947051GWAS596027_Hhemoglobin measurement QTL GWAS596027 (human)3e-30hemoglobin measurementhemoglobin measurement (CMO:0000508)166777768767777688Human
407080233GWAS729209_Hhigh density lipoprotein cholesterol measurement QTL GWAS729209 (human)4e-17high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166779572467795725Human
407343287GWAS992263_Hcholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS992263 (human)1e-08cholesteryl esters:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166775194167751942Human
407247734GWAS896710_Hlymphocyte count QTL GWAS896710 (human)9e-15lymphocyte countblood lymphocyte count (CMO:0000031)166779417567794176Human
406946288GWAS595264_Hhematocrit QTL GWAS595264 (human)3e-27hematocrithematocrit (CMO:0000037)166777813667778137Human
406899377GWAS548353_Hdiastolic blood pressure, systolic blood pressure QTL GWAS548353 (human)0.000002diastolic blood pressure, systolic blood pressuresystolic blood pressure (CMO:0000004)166780264967802650Human
407140342GWAS789318_Hphospholipids in very large HDL measurement QTL GWAS789318 (human)3e-19phospholipids in very large HDL measurement 166777768767777688Human
406986160GWAS635136_Hhigh density lipoprotein cholesterol measurement QTL GWAS635136 (human)2e-14high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166777768767777688Human
407136753GWAS785729_Htotal lipids in very large HDL measurement QTL GWAS785729 (human)5e-20total lipids in very large HDL measurement 166777813667778137Human
407120243GWAS769219_Htotal lipids in medium HDL measurement QTL GWAS769219 (human)1e-09total lipids in medium HDL measurement 166780264967802650Human
406959032GWAS608008_Hhigh density lipoprotein cholesterol measurement QTL GWAS608008 (human)9e-26high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166777768767777688Human
407069178GWAS718154_Hhigh density lipoprotein particle size measurement QTL GWAS718154 (human)2e-18high density lipoprotein particle size measurementblood high density lipoprotein particle diameter (CMO:0002692)166779572467795725Human
406944570GWAS593546_Hhematocrit QTL GWAS593546 (human)3e-24hematocrithematocrit (CMO:0000037)166779563467795635Human
406935997GWAS584973_Hhematocrit QTL GWAS584973 (human)4e-27hematocrithematocrit (CMO:0000037)166777768767777688Human
407078399GWAS727375_Htotal lipids in large HDL QTL GWAS727375 (human)1e-17total lipids in large HDL166779572467795725Human
407134201GWAS783177_Hfree cholesterol in very large HDL measurement QTL GWAS783177 (human)3e-22free cholesterol in very large HDL measurement 166777813667778137Human
407078845GWAS727821_Hphospholipids in large HDL measurement QTL GWAS727821 (human)2e-16phospholipids in large HDL measurementblood high density lipoprotein phospholipid level (CMO:0001565)166779572467795725Human
407087292GWAS736268_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS736268 (human)5e-14total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)166780264967802650Human

Markers in Region
A005P46  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,758,213 - 67,758,371UniSTSGRCh37
Build 361666,315,714 - 66,315,872RGDNCBI36
Celera1652,266,702 - 52,266,860RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,631,106 - 53,631,264UniSTS
GeneMap99-GB4 RH Map16406.0UniSTS
NCBI RH Map16508.6UniSTS
G20405  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,758,213 - 67,758,371UniSTSGRCh37
Build 361666,315,714 - 66,315,872RGDNCBI36
Celera1652,266,702 - 52,266,860RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,631,106 - 53,631,264UniSTS
SHGC-60652  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,757,065 - 67,757,357UniSTSGRCh37
Build 361666,314,566 - 66,314,858RGDNCBI36
Celera1652,265,554 - 52,265,846RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,629,958 - 53,630,250UniSTS
GeneMap99-GB4 RH Map16402.35UniSTS
Whitehead-RH Map16303.1UniSTS
NCBI RH Map16508.6UniSTS
D16S2603E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,758,145 - 67,758,300UniSTSGRCh37
Build 361666,315,646 - 66,315,801RGDNCBI36
Celera1652,266,634 - 52,266,789RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,631,038 - 53,631,193UniSTS
SHGC-61152  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,757,093 - 67,757,232UniSTSGRCh37
Build 361666,314,594 - 66,314,733RGDNCBI36
Celera1652,265,582 - 52,265,721RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,629,986 - 53,630,125UniSTS
GeneMap99-GB4 RH Map16406.99UniSTS
NCBI RH Map16508.6UniSTS
SHGC-61185  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371667,759,925 - 67,760,046UniSTSGRCh37
Build 361666,317,426 - 66,317,547RGDNCBI36
Celera1652,268,414 - 52,268,535RGD
Cytogenetic Map16q22.1UniSTS
HuRef1653,632,818 - 53,632,939UniSTS
GeneMap99-GB4 RH Map16405.59UniSTS
NCBI RH Map16508.6UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001320238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001320240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001410883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_020850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005256072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006721238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017023509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047434409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB040897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC010530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC040162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI275875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY337313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC121177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000317506   ⟹   ENSP00000316589
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,723,070 - 67,806,560 (-)Ensembl
Ensembl Acc Id: ENST00000448631   ⟹   ENSP00000392808
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,726,005 - 67,806,560 (-)Ensembl
Ensembl Acc Id: ENST00000602506   ⟹   ENSP00000473538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,726,009 - 67,806,557 (-)Ensembl
Ensembl Acc Id: ENST00000602525
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,731,029 - 67,806,557 (-)Ensembl
Ensembl Acc Id: ENST00000602638   ⟹   ENSP00000473554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,731,084 - 67,806,560 (-)Ensembl
Ensembl Acc Id: ENST00000602677   ⟹   ENSP00000473396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,726,031 - 67,806,560 (-)Ensembl
Ensembl Acc Id: ENST00000602815   ⟹   ENSP00000473395
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,734,969 - 67,806,560 (-)Ensembl
Ensembl Acc Id: ENST00000602887
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,735,645 - 67,806,518 (-)Ensembl
Ensembl Acc Id: ENST00000630626   ⟹   ENSP00000486026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1667,723,102 - 67,806,652 (-)Ensembl
RefSeq Acc Id: NM_001320238   ⟹   NP_001307167
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,806,560 (-)NCBI
CHM1_11669,164,703 - 69,248,722 (-)NCBI
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001320239   ⟹   NP_001307168
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,806,560 (-)NCBI
CHM1_11669,164,703 - 69,248,722 (-)NCBI
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001320240   ⟹   NP_001307169
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,806,560 (-)NCBI
CHM1_11669,164,703 - 69,248,722 (-)NCBI
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001410883   ⟹   NP_001397812
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,806,560 (-)NCBI
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBI
RefSeq Acc Id: NM_020850   ⟹   NP_065901
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,806,560 (-)NCBI
GRCh371667,756,973 - 67,840,788 (-)NCBI
Build 361666,314,506 - 66,398,056 (-)NCBI Archive
Celera1652,265,494 - 52,348,990 (-)RGD
HuRef1653,629,898 - 53,712,872 (-)RGD
CHM1_11669,164,703 - 69,248,722 (-)NCBI
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006721238   ⟹   XP_006721301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,734,799 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011523247   ⟹   XP_011521549
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,744,225 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047434407   ⟹   XP_047290363
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,805,510 (-)NCBI
RefSeq Acc Id: XM_047434408   ⟹   XP_047290364
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,734,790 (-)NCBI
RefSeq Acc Id: XM_047434409   ⟹   XP_047290365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,723,070 - 67,759,650 (-)NCBI
RefSeq Acc Id: XM_054313560   ⟹   XP_054169535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,517,838 - 73,600,533 (-)NCBI
RefSeq Acc Id: XM_054313561   ⟹   XP_054169536
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,517,838 - 73,529,567 (-)NCBI
RefSeq Acc Id: XM_054313562   ⟹   XP_054169537
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,517,838 - 73,529,558 (-)NCBI
RefSeq Acc Id: XM_054313563   ⟹   XP_054169538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,517,838 - 73,538,993 (-)NCBI
RefSeq Acc Id: XM_054313564   ⟹   XP_054169539
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01673,517,838 - 73,554,418 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001307167 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307168 (Get FASTA)   NCBI Sequence Viewer  
  NP_001307169 (Get FASTA)   NCBI Sequence Viewer  
  NP_001397812 (Get FASTA)   NCBI Sequence Viewer  
  NP_065901 (Get FASTA)   NCBI Sequence Viewer  
  XP_006721301 (Get FASTA)   NCBI Sequence Viewer  
  XP_011521549 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290363 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290364 (Get FASTA)   NCBI Sequence Viewer  
  XP_047290365 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169535 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169536 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169537 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169538 (Get FASTA)   NCBI Sequence Viewer  
  XP_054169539 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH99917 (Get FASTA)   NCBI Sequence Viewer  
  AAI21177 (Get FASTA)   NCBI Sequence Viewer  
  AAI21178 (Get FASTA)   NCBI Sequence Viewer  
  AAR01220 (Get FASTA)   NCBI Sequence Viewer  
  BAA95988 (Get FASTA)   NCBI Sequence Viewer  
  BAG51561 (Get FASTA)   NCBI Sequence Viewer  
  BAG58181 (Get FASTA)   NCBI Sequence Viewer  
  BAG58442 (Get FASTA)   NCBI Sequence Viewer  
  BAG60941 (Get FASTA)   NCBI Sequence Viewer  
  BAG64944 (Get FASTA)   NCBI Sequence Viewer  
  EAW83167 (Get FASTA)   NCBI Sequence Viewer  
  EAW83168 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000316589
  ENSP00000316589.3
  ENSP00000392808
  ENSP00000392808.2
  ENSP00000473395.1
  ENSP00000473396
  ENSP00000473396.1
  ENSP00000473538.1
  ENSP00000473554.1
GenBank Protein Q6VN20 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_065901   ⟸   NM_020850
- Peptide Label: isoform 1
- UniProtKB: E7EW27 (UniProtKB/Swiss-Prot),   B4DQH9 (UniProtKB/Swiss-Prot),   B4DID0 (UniProtKB/Swiss-Prot),   A4FTY2 (UniProtKB/Swiss-Prot),   Q9P264 (UniProtKB/Swiss-Prot),   Q6VN20 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006721301   ⟸   XM_006721238
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011521549   ⟸   XM_011523247
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: NP_001307167   ⟸   NM_001320238
- Peptide Label: isoform 2
- UniProtKB: Q6VN20 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307168   ⟸   NM_001320239
- Peptide Label: isoform 3
- UniProtKB: Q6VN20 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001307169   ⟸   NM_001320240
- Peptide Label: isoform 4
- UniProtKB: B3KP49 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000473395   ⟸   ENST00000602815
Ensembl Acc Id: ENSP00000473554   ⟸   ENST00000602638
Ensembl Acc Id: ENSP00000473396   ⟸   ENST00000602677
Ensembl Acc Id: ENSP00000473538   ⟸   ENST00000602506
Ensembl Acc Id: ENSP00000392808   ⟸   ENST00000448631
Ensembl Acc Id: ENSP00000486026   ⟸   ENST00000630626
Ensembl Acc Id: ENSP00000316589   ⟸   ENST00000317506
RefSeq Acc Id: XP_047290363   ⟸   XM_047434407
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047290365   ⟸   XM_047434409
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047290364   ⟸   XM_047434408
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001397812   ⟸   NM_001410883
- Peptide Label: isoform 5
- UniProtKB: R4GMX8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054169535   ⟸   XM_054313560
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054169539   ⟸   XM_054313564
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054169538   ⟸   XM_054313563
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054169536   ⟸   XM_054313561
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054169537   ⟸   XM_054313562
- Peptide Label: isoform X3
Protein Domains
B30.2/SPRY   CTLH   LisH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VN20-F1-model_v2 AlphaFold Q6VN20 1-620 view protein structure

Promoters
RGD ID:6793410
Promoter ID:HG_KWN:24052
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_018430,   NM_020850,   UC002EUF.2,   UC002EUG.2,   UC002EUH.2,   UC002EUI.2,   UC010CEO.1,   UC010CEP.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361666,396,741 - 66,398,492 (-)MPROMDB
RGD ID:7232579
Promoter ID:EPDNEW_H22035
Type:initiation region
Name:RANBP10_1
Description:RAN binding protein 10
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381667,806,560 - 67,806,620EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:29285 AgrOrtholog
COSMIC RANBP10 COSMIC
Ensembl Genes ENSG00000141084 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000317506 ENTREZGENE
  ENST00000317506.8 UniProtKB/Swiss-Prot
  ENST00000448631 ENTREZGENE
  ENST00000448631.6 UniProtKB/Swiss-Prot
  ENST00000602506.5 UniProtKB/TrEMBL
  ENST00000602638.5 UniProtKB/TrEMBL
  ENST00000602677 ENTREZGENE
  ENST00000602677.5 UniProtKB/TrEMBL
  ENST00000602815.5 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000141084 GTEx
HGNC ID HGNC:29285 ENTREZGENE
Human Proteome Map RANBP10 Human Proteome Map
InterPro B30.2/SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CRA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTLH/CRA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTLH_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY_RanBP9/10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ubq-SigPath_Reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:57610 UniProtKB/Swiss-Prot
NCBI Gene 57610 ENTREZGENE
OMIM 614031 OMIM
PANTHER RAN BINDING PROTEIN 9-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CLTH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LisH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134929520 PharmGKB
PROSITE B302_SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LISH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CRA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SPRY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A4FTY2 ENTREZGENE
  B3KP49 ENTREZGENE, UniProtKB/TrEMBL
  B4DID0 ENTREZGENE
  B4DQH9 ENTREZGENE
  E7EW27 ENTREZGENE
  Q6VN20 ENTREZGENE
  Q9P264 ENTREZGENE
  R4GMX7_HUMAN UniProtKB/TrEMBL
  R4GMX8 ENTREZGENE, UniProtKB/TrEMBL
  R4GN91_HUMAN UniProtKB/TrEMBL
  R4GNA3_HUMAN UniProtKB/TrEMBL
  RBP10_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A4FTY2 UniProtKB/Swiss-Prot
  B4DID0 UniProtKB/Swiss-Prot
  B4DQH9 UniProtKB/Swiss-Prot
  E7EW27 UniProtKB/Swiss-Prot
  Q9P264 UniProtKB/Swiss-Prot