Ranbp10 (RAN binding protein 10) - Rat Genome Database

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Gene: Ranbp10 (RAN binding protein 10) Ictidomys tridecemlineatus
Analyze
Symbol: Ranbp10
Name: RAN binding protein 10
RGD ID: 12530264
Description: ENCODES a protein that exhibits beta-tubulin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN microtubule cytoskeleton organization (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); chromosome 16q22 deletion syndrome (ortholog); Disease Progression (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: RAN binding protein 10, transcript variant X1; RAN binding protein 10, transcript variant X2; RAN binding protein 10, transcript variant X3; ran-binding protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,403,560 - 41,468,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,117,685 - 18,185,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,117,532 - 18,185,531 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Ranbp10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,403,560 - 41,468,483 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,117,685 - 18,185,664 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,117,532 - 18,185,531 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,723,070 - 67,806,560 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,723,070 - 67,806,560 (-)EnsemblGRCh38hg38GRCh38
GRCh371667,756,973 - 67,840,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,314,506 - 66,398,056 (-)NCBINCBI36Build 36hg18NCBI36
Build 341666,314,505 - 66,398,056NCBI
Celera1652,265,494 - 52,348,990 (-)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,629,898 - 53,712,872 (-)NCBIHuRef
CHM1_11669,164,739 - 69,248,722 (-)NCBICHM1_1
T2T-CHM13v2.01673,517,838 - 73,601,583 (-)NCBIT2T-CHM13v2.0
Ranbp10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,494,940 - 106,560,463 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,494,940 - 106,553,982 (-)EnsemblGRCm39 Ensembl
GRCm388105,768,308 - 105,833,831 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,768,308 - 105,827,350 (-)EnsemblGRCm38mm10GRCm38
MGSCv378108,292,208 - 108,351,250 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368108,657,437 - 108,716,479 (-)NCBIMGSCv36mm8
Celera8109,995,909 - 110,055,026 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Ranbp10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,565,924 - 50,626,720 (-)NCBIGRCr8
mRatBN7.21933,656,046 - 33,716,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,656,046 - 33,717,033 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1940,471,601 - 40,532,237 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,124,941 - 41,185,558 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,422,953 - 43,483,501 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01937,734,662 - 37,795,360 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,734,599 - 37,796,089 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01948,600,923 - 48,662,025 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41935,601,078 - 35,661,711 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11935,605,962 - 35,666,720 (-)NCBI
Celera1933,083,963 - 33,144,447 (-)NCBICelera
Cytogenetic Map19q12NCBI
Ranbp10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,889,349 - 8,960,122 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554848,889,349 - 8,960,122 (+)NCBIChiLan1.0ChiLan1.0
RANBP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,256,401 - 77,333,749 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,167,842 - 83,244,759 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,071,095 - 48,148,105 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,460,311 - 67,536,849 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,460,311 - 67,536,892 (-)Ensemblpanpan1.1panPan2
CENPT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,641,261 - 81,647,047 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,641,426 - 81,647,039 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha581,631,054 - 81,636,750 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0582,076,463 - 82,082,161 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,076,538 - 82,082,153 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,902,886 - 81,908,582 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,584,471 - 81,590,166 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,226,961 - 82,232,656 (+)NCBIUU_Cfam_GSD_1.0
RANBP10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,352,003 - 28,428,370 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1628,352,001 - 28,428,383 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2625,704,602 - 25,780,693 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,631,308 - 59,711,098 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604722,359,168 - 22,440,010 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,558,468 - 18,629,824 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474618,558,660 - 18,629,132 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000002833   ⟹   ENSSTOP00000002535
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647518,121,287 - 18,182,345 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000039906   ⟹   ENSSTOP00000032527
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647518,117,685 - 18,185,664 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000039985   ⟹   ENSSTOP00000027658
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647518,117,685 - 18,182,400 (-)Ensembl
RefSeq Acc Id: XM_005318331   ⟹   XP_005318388
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,406,769 - 41,468,483 (+)NCBI
SpeTri2.0NW_00493647518,117,532 - 18,182,362 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721668   ⟹   XP_021577343
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,403,560 - 41,467,833 (+)NCBI
SpeTri2.0NW_00493647518,117,532 - 18,185,531 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721669   ⟹   XP_021577344
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,458,709 - 41,467,833 (+)NCBI
SpeTri2.0NW_00493647518,117,532 - 18,130,389 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040280015   ⟹   XP_040135949
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,406,732 - 41,467,833 (+)NCBI
RefSeq Acc Id: XM_040280016   ⟹   XP_040135950
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934941,406,289 - 41,467,833 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005318388   ⟸   XM_005318331
- Peptide Label: isoform X1
- UniProtKB: A0A287D279 (UniProtKB/TrEMBL),   I3M173 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577343   ⟸   XM_021721668
- Peptide Label: isoform X2
- UniProtKB: A0A287D279 (UniProtKB/TrEMBL),   I3M173 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021577344   ⟸   XM_021721669
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_040135950   ⟸   XM_040280016
- Peptide Label: isoform X4
- UniProtKB: I3M173 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040135949   ⟸   XM_040280015
- Peptide Label: isoform X3
- UniProtKB: I3M173 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000027658   ⟸   ENSSTOT00000039985
RefSeq Acc Id: ENSSTOP00000032527   ⟸   ENSSTOT00000039906
RefSeq Acc Id: ENSSTOP00000002535   ⟸   ENSSTOT00000002833
Protein Domains
B30.2/SPRY   CTLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002829 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002833.3 UniProtKB/TrEMBL
  ENSSTOT00000039906.1 UniProtKB/TrEMBL
  ENSSTOT00000039985.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  CRA_dom UniProtKB/TrEMBL
  CTLH/CRA UniProtKB/TrEMBL
  CTLH_C UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  SPRY_RanBP9/10 UniProtKB/TrEMBL
NCBI Gene Ranbp10 ENTREZGENE
PANTHER RAN BINDING PROTEIN 10 UniProtKB/TrEMBL
  RAN BINDING PROTEIN 9-RELATED UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 10 UniProtKB/TrEMBL
Pfam CLTH UniProtKB/TrEMBL
  LisH UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  CTLH UniProtKB/TrEMBL
  LISH UniProtKB/TrEMBL
SMART CRA UniProtKB/TrEMBL
  CTLH UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP SSF49899 UniProtKB/TrEMBL
UniProt A0A287D279 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DG86_ICTTR UniProtKB/TrEMBL
  I3M173 ENTREZGENE, UniProtKB/TrEMBL