B3GNT7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7) - Rat Genome Database

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Gene: B3GNT7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7) Homo sapiens
Analyze
Symbol: B3GNT7
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
RGD ID: 1321569
HGNC Page HGNC:18811
Description: Enables acetylglucosaminyltransferase activity. Involved in keratan sulfate biosynthetic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be active in Golgi membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta 1,3-N-acetylglucosaminyltransferase 7; beta-1,3-Gn-T7; beta-1,3-N-acetylglucosaminyltransferase 7; beta3Gn-T7; beta3GnT7; BGnT-7
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,395,710 - 231,401,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,395,671 - 231,408,799 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,260,421 - 232,265,875 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,968,579 - 231,971,928 (+)NCBINCBI36Build 36hg18NCBI36
Build 342232,085,839 - 232,089,189NCBI
Celera2226,036,697 - 226,042,236 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2224,101,622 - 224,107,116 (+)NCBIHuRef
CHM1_12232,266,140 - 232,271,695 (+)NCBICHM1_1
T2T-CHM13v2.02231,880,160 - 231,885,616 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12061784   PMID:14706853   PMID:15815621   PMID:17690104   PMID:21873635   PMID:23583979   PMID:24418929   PMID:30021884   PMID:32296183   PMID:33961781   PMID:34864058   PMID:37740763  


Genomics

Comparative Map Data
B3GNT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,395,710 - 231,401,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,395,671 - 231,408,799 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,260,421 - 232,265,875 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,968,579 - 231,971,928 (+)NCBINCBI36Build 36hg18NCBI36
Build 342232,085,839 - 232,089,189NCBI
Celera2226,036,697 - 226,042,236 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2224,101,622 - 224,107,116 (+)NCBIHuRef
CHM1_12232,266,140 - 232,271,695 (+)NCBICHM1_1
T2T-CHM13v2.02231,880,160 - 231,885,616 (+)NCBIT2T-CHM13v2.0
B3gnt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,230,943 - 86,235,027 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,230,554 - 86,235,027 (+)EnsemblGRCm39 Ensembl
GRCm38186,303,221 - 86,307,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,302,832 - 86,307,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,199,796 - 88,203,880 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36188,134,639 - 88,138,476 (+)NCBIMGSCv36mm8
Celera189,271,394 - 89,275,478 (+)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
B3gnt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,404,197 - 94,408,148 (+)NCBIGRCr8
mRatBN7.2986,956,220 - 86,960,171 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,956,220 - 86,960,170 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,373,838 - 95,377,789 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,502,605 - 100,506,556 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,884,564 - 98,888,515 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,326,283 - 93,330,234 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,326,283 - 93,330,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0993,055,878 - 93,059,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4985,069,241 - 85,073,192NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1985,252,659 - 85,256,610NCBI
Cytogenetic Map9q35NCBI
B3gnt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554534,179,547 - 4,180,737 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554534,178,544 - 4,180,738 (-)NCBIChiLan1.0ChiLan1.0
B3GNT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213134,015,691 - 134,021,268 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B134,030,664 - 134,036,234 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,644,899 - 118,650,463 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
B3GNT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,287,937 - 43,293,416 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,847,137 - 43,852,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02543,545,318 - 43,550,903 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2543,545,301 - 43,550,890 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12543,472,896 - 43,478,886 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02543,316,106 - 43,321,691 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,471,442 - 43,477,003 (+)NCBIUU_Cfam_GSD_1.0
B3gnt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,441,557 - 185,443,920 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365255,496,465 - 5,505,278 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365255,495,815 - 5,508,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15132,127,396 - 132,131,916 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115132,127,386 - 132,131,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,843,455 - 145,846,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,429,516 - 117,435,910 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604082,013,921 - 82,018,409 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3gnt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248434,603,181 - 4,605,744 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248434,603,014 - 4,606,757 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B3GNT7
22 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q32.3-37.3(chr2:194898783-236473913)x3 copy number gain See cases [RCV000051119] Chr2:194898783..236473913 [GRCh38]
Chr2:195763507..237382556 [GRCh37]
Chr2:195471752..237047295 [NCBI36]
Chr2:2q32.3-37.3
pathogenic
GRCh38/hg38 2q36.3-37.2(chr2:227343278-235339168)x1 copy number loss See cases [RCV000052638] Chr2:227343278..235339168 [GRCh38]
Chr2:228207994..236247812 [GRCh37]
Chr2:227916238..235912551 [NCBI36]
Chr2:2q36.3-37.2
pathogenic
GRCh38/hg38 2q37.1-37.3(chr2:231375505-242065208)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052639]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052639]|See cases [RCV000052639] Chr2:231375505..242065208 [GRCh38]
Chr2:232240216..243007359 [GRCh37]
Chr2:231948460..242656032 [NCBI36]
Chr2:2q37.1-37.3
pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:226978129-236886599)x1 copy number loss See cases [RCV000052637] Chr2:226978129..236886599 [GRCh38]
Chr2:227842845..237795242 [GRCh37]
Chr2:227551089..237459981 [NCBI36]
Chr2:2q36.3-37.3
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:188818195-242065208)x3 copy number gain See cases [RCV000052958] Chr2:188818195..242065208 [GRCh38]
Chr2:189682921..243007359 [GRCh37]
Chr2:189391166..242656032 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:190310736-241892770)x3 copy number gain See cases [RCV000052959] Chr2:190310736..241892770 [GRCh38]
Chr2:191175462..242834921 [GRCh37]
Chr2:190883707..242483594 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q32.3-37.3(chr2:193122313-241074980)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|See cases [RCV000052960] Chr2:193122313..241074980 [GRCh38]
Chr2:193987039..242014395 [GRCh37]
Chr2:193695284..241663068 [NCBI36]
Chr2:2q32.3-37.3
pathogenic
GRCh38/hg38 2q36.1-37.3(chr2:223992431-242126245)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052972]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052972]|See cases [RCV000052972] Chr2:223992431..242126245 [GRCh38]
Chr2:224857148..243059659 [GRCh37]
Chr2:224565392..242717069 [NCBI36]
Chr2:2q36.1-37.3
pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:227803148-242086301)x3 copy number gain See cases [RCV000052973] Chr2:227803148..242086301 [GRCh38]
Chr2:228667864..243028452 [GRCh37]
Chr2:228376108..242677125 [NCBI36]
Chr2:2q36.3-37.3
pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:228723579-241404867)x3 copy number gain See cases [RCV000134169] Chr2:228723579..241404867 [GRCh38]
Chr2:229588295..242344282 [GRCh37]
Chr2:229296539..241992955 [NCBI36]
Chr2:2q36.3-37.3
pathogenic
GRCh38/hg38 2q34-37.3(chr2:210579676-242126245)x3 copy number gain See cases [RCV000135934] Chr2:210579676..242126245 [GRCh38]
Chr2:211444400..243059659 [GRCh37]
Chr2:211152645..242717069 [NCBI36]
Chr2:2q34-37.3
pathogenic
GRCh38/hg38 2q36.3-37.2(chr2:228014149-234976424)x3 copy number gain See cases [RCV000136967] Chr2:228014149..234976424 [GRCh38]
Chr2:228878865..235885068 [GRCh37]
Chr2:228587109..235549807 [NCBI36]
Chr2:2q36.3-37.2
pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:189436149-241841232)x3 copy number gain See cases [RCV000142307] Chr2:189436149..241841232 [GRCh38]
Chr2:190300875..242783384 [GRCh37]
Chr2:190009120..242432057 [NCBI36]
Chr2:2q32.2-37.3
pathogenic
GRCh38/hg38 2q35-37.3(chr2:218101759-242126245)x3 copy number gain See cases [RCV000143216] Chr2:218101759..242126245 [GRCh38]
Chr2:218966482..243059659 [GRCh37]
Chr2:218674727..242717069 [NCBI36]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q37.1(chr2:232215111-235593473)x1 copy number loss See cases [RCV000446723] Chr2:232215111..235593473 [GRCh37]
Chr2:2q37.1
likely pathogenic
GRCh37/hg19 2q35-37.3(chr2:219966808-237815985)x3 copy number gain See cases [RCV000448049] Chr2:219966808..237815985 [GRCh37]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q36.1-37.3(chr2:222077224-239394441)x3 copy number gain See cases [RCV000511816] Chr2:222077224..239394441 [GRCh37]
Chr2:2q36.1-37.3
pathogenic
GRCh37/hg19 2q34-37.3(chr2:213518431-242783384)x3 copy number gain See cases [RCV000512009] Chr2:213518431..242783384 [GRCh37]
Chr2:2q34-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
NM_145236.3(B3GNT7):c.868G>A (p.Gly290Ser) single nucleotide variant not specified [RCV004298690] Chr2:231398587 [GRCh38]
Chr2:232263298 [GRCh37]
Chr2:2q37.1
likely benign
NM_145236.3(B3GNT7):c.670A>G (p.Lys224Glu) single nucleotide variant not specified [RCV004319979] Chr2:231398389 [GRCh38]
Chr2:232263100 [GRCh37]
Chr2:2q37.1
uncertain significance
GRCh37/hg19 2q35-37.3(chr2:219225872-242016876)x3 copy number gain not provided [RCV000682170] Chr2:219225872..242016876 [GRCh37]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2q34-37.3(chr2:210779657-239879183)x3 copy number gain See cases [RCV000790568] Chr2:210779657..239879183 [GRCh37]
Chr2:2q34-37.3
pathogenic
NM_145236.3(B3GNT7):c.494G>A (p.Gly165Asp) single nucleotide variant not specified [RCV004302494] Chr2:231398213 [GRCh38]
Chr2:232262924 [GRCh37]
Chr2:2q37.1
uncertain significance
GRCh37/hg19 2q36.3-37.3(chr2:230814690-242783384)x3 copy number gain not provided [RCV001007519] Chr2:230814690..242783384 [GRCh37]
Chr2:2q36.3-37.3
pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3
pathogenic
GRCh37/hg19 2q31.2-37.3(chr2:178397959-243007457)x3 copy number gain See cases [RCV001263052] Chr2:178397959..243007457 [GRCh37]
Chr2:2q31.2-37.3
pathogenic
GRCh37/hg19 2q35-37.3(chr2:219606537-239217703) copy number loss not specified [RCV002053285] Chr2:219606537..239217703 [GRCh37]
Chr2:2q35-37.3
pathogenic
GRCh37/hg19 2q36.3-37.1(chr2:228807574-235475892) copy number loss not specified [RCV002053291] Chr2:228807574..235475892 [GRCh37]
Chr2:2q36.3-37.1
pathogenic
GRCh37/hg19 2q37.1(chr2:232215111-235593473) copy number loss not specified [RCV002053294] Chr2:232215111..235593473 [GRCh37]
Chr2:2q37.1
likely pathogenic
NC_000002.11:g.(?_231033840)_(234978657_?)dup duplication Joubert syndrome 22 [RCV001877690]|Perlman syndrome [RCV001877689] Chr2:231033840..234978657 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.660C>G (p.Ile220Met) single nucleotide variant not specified [RCV004312503] Chr2:231398379 [GRCh38]
Chr2:232263090 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.1135C>T (p.Pro379Ser) single nucleotide variant not specified [RCV004239448] Chr2:231398854 [GRCh38]
Chr2:232263565 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.352C>T (p.Arg118Cys) single nucleotide variant not specified [RCV004164293] Chr2:231398071 [GRCh38]
Chr2:232262782 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.628G>A (p.Asp210Asn) single nucleotide variant not specified [RCV004218582] Chr2:231398347 [GRCh38]
Chr2:232263058 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.451G>A (p.Glu151Lys) single nucleotide variant not specified [RCV004158775] Chr2:231398170 [GRCh38]
Chr2:232262881 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.29G>A (p.Arg10Gln) single nucleotide variant not specified [RCV004096329] Chr2:231397748 [GRCh38]
Chr2:232262459 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.1187G>A (p.Arg396His) single nucleotide variant not specified [RCV004190475] Chr2:231398906 [GRCh38]
Chr2:232263617 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.556C>T (p.Arg186Cys) single nucleotide variant not specified [RCV004233149] Chr2:231398275 [GRCh38]
Chr2:232262986 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.164T>C (p.Leu55Pro) single nucleotide variant not specified [RCV004135667] Chr2:231397883 [GRCh38]
Chr2:232262594 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.325C>T (p.Arg109Trp) single nucleotide variant not specified [RCV004190888] Chr2:231398044 [GRCh38]
Chr2:232262755 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.211C>T (p.Pro71Ser) single nucleotide variant not specified [RCV004217244] Chr2:231397930 [GRCh38]
Chr2:232262641 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.379C>G (p.Pro127Ala) single nucleotide variant not specified [RCV004351418] Chr2:231398098 [GRCh38]
Chr2:232262809 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.632C>A (p.Thr211Asn) single nucleotide variant not specified [RCV004363374] Chr2:231398351 [GRCh38]
Chr2:232263062 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.604G>A (p.Asp202Asn) single nucleotide variant not specified [RCV004356193] Chr2:231398323 [GRCh38]
Chr2:232263034 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.647C>G (p.Thr216Ser) single nucleotide variant not specified [RCV004336725] Chr2:231398366 [GRCh38]
Chr2:232263077 [GRCh37]
Chr2:2q37.1
uncertain significance
GRCh37/hg19 2q36.2-37.3(chr2:225995545-237594511)x3 copy number gain not provided [RCV003484091] Chr2:225995545..237594511 [GRCh37]
Chr2:2q36.2-37.3
pathogenic
GRCh37/hg19 2q35-37.3(chr2:218376403-242783384)x3 copy number gain not provided [RCV003484087] Chr2:218376403..242783384 [GRCh37]
Chr2:2q35-37.3
pathogenic
NM_145236.3(B3GNT7):c.58G>A (p.Val20Met) single nucleotide variant not provided [RCV003440226] Chr2:231397777 [GRCh38]
Chr2:232262488 [GRCh37]
Chr2:2q37.1
uncertain significance
Single allele duplication not provided [RCV003448672] Chr2:230077026..243049549 [GRCh37]
Chr2:2q36.3-37.3
pathogenic
NM_145236.3(B3GNT7):c.901G>A (p.Gly301Ser) single nucleotide variant not specified [RCV004423515] Chr2:231398620 [GRCh38]
Chr2:232263331 [GRCh37]
Chr2:2q37.1
uncertain significance
NM_145236.3(B3GNT7):c.97C>G (p.Gln33Glu) single nucleotide variant not specified [RCV004423516] Chr2:231397816 [GRCh38]
Chr2:232262527 [GRCh37]
Chr2:2q37.1
uncertain significance
GRCh37/hg19 2q35-37.3(chr2:216815496-242782258)x3 copy number gain See cases [RCV004442836] Chr2:216815496..242782258 [GRCh37]
Chr2:2q35-37.3
pathogenic
NM_145236.3(B3GNT7):c.1050C>T (p.Phe350=) single nucleotide variant not provided [RCV004727249] Chr2:231398769 [GRCh38]
Chr2:232263480 [GRCh37]
Chr2:2q37.1
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1515
Count of miRNA genes:773
Interacting mature miRNAs:896
Transcripts:ENST00000287590, ENST00000479618
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597604558GWAS1661418_Hheart rate QTL GWAS1661418 (human)3e-65heart rateheart rate (CMO:0000002)2231400203231400204Human
2289332BW376_HBody weight QTL 376 (human)1.870.00168Body fat amountabdominal2213765566239765566Human
597617817GWAS1674677_Hheart rate QTL GWAS1674677 (human)2e-40heart rateheart rate (CMO:0000002)2231400203231400204Human
597612758GWAS1669618_Hheart rate QTL GWAS1669618 (human)7e-37heart rateheart rate (CMO:0000002)2231400203231400204Human
597604818GWAS1661678_Hheart rate QTL GWAS1661678 (human)2e-16heart rateheart rate (CMO:0000002)2231400203231400204Human
597617873GWAS1674733_Hheart rate QTL GWAS1674733 (human)1e-11heart rateheart rate (CMO:0000002)2231398416231398417Human

Markers in Region
B3GNT7_4416  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,263,052 - 232,263,830UniSTSGRCh37
Build 362231,971,296 - 231,972,074RGDNCBI36
Celera2226,039,414 - 226,040,192RGD
HuRef2224,104,295 - 224,105,073UniSTS
G10658  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2q37.1UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2434 2782 2246 4964 1721 2343 5 620 1942 463 2267 7270 6449 50 3730 847 1735 1612 172 1

Sequence


Ensembl Acc Id: ENST00000287590   ⟹   ENSP00000287590
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,395,710 - 231,401,164 (+)Ensembl
Ensembl Acc Id: ENST00000479618
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,397,176 - 231,398,257 (+)Ensembl
Ensembl Acc Id: ENST00000714191   ⟹   ENSP00000519481
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,395,671 - 231,408,799 (+)Ensembl
Ensembl Acc Id: ENST00000714192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,401,310 - 231,408,792 (+)Ensembl
RefSeq Acc Id: NM_145236   ⟹   NP_660279
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382231,395,710 - 231,401,164 (+)NCBI
GRCh372232,260,335 - 232,265,875 (+)RGD
Build 362231,968,579 - 231,971,928 (+)NCBI Archive
Celera2226,036,697 - 226,042,236 (+)RGD
HuRef2224,101,622 - 224,107,116 (+)ENTREZGENE
CHM1_12232,266,140 - 232,271,695 (+)NCBI
T2T-CHM13v2.02231,880,160 - 231,885,616 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_660279 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAM61770 (Get FASTA)   NCBI Sequence Viewer  
  AAY24246 (Get FASTA)   NCBI Sequence Viewer  
  BAG54296 (Get FASTA)   NCBI Sequence Viewer  
  EAW70958 (Get FASTA)   NCBI Sequence Viewer  
  EAW70959 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000287590
  ENSP00000287590.5
  ENSP00000519481.1
GenBank Protein Q8NFL0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_660279   ⟸   NM_145236
- UniProtKB: B3KWY4 (UniProtKB/Swiss-Prot),   B7WNP0 (UniProtKB/Swiss-Prot),   Q8NFL0 (UniProtKB/Swiss-Prot),   A0AAQ5BHP6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000287590   ⟸   ENST00000287590
Ensembl Acc Id: ENSP00000519481   ⟸   ENST00000714191
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NFL0-F1-model_v2 AlphaFold Q8NFL0 1-401 view protein structure

Promoters
RGD ID:6863062
Promoter ID:EPDNEW_H4696
Type:initiation region
Name:B3GNT7_1
Description:UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382231,395,710 - 231,395,770EPDNEW
RGD ID:6796842
Promoter ID:HG_KWN:37695
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:ENST00000409305
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,968,176 - 231,968,676 (+)MPROMDB
RGD ID:6796841
Promoter ID:HG_KWN:37696
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   Lymphoblastoid
Transcripts:OTTHUMT00000332829
Position:
Human AssemblyChrPosition (strand)Source
Build 362231,969,261 - 231,970,322 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18811 AgrOrtholog
COSMIC B3GNT7 COSMIC
Ensembl Genes ENSG00000156966 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000287590 ENTREZGENE
  ENST00000287590.6 UniProtKB/Swiss-Prot
  ENST00000714191.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.850 UniProtKB/TrEMBL
  3.90.550.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000156966 GTEx
HGNC ID HGNC:18811 ENTREZGENE
Human Proteome Map B3GNT7 Human Proteome Map
InterPro Glyco_trans_31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MLVIN_C UniProtKB/TrEMBL
KEGG Report hsa:93010 UniProtKB/Swiss-Prot
NCBI Gene 93010 ENTREZGENE
OMIM 615313 OMIM
PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  UDP-GLCNAC:BETAGAL BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MLVIN_C UniProtKB/TrEMBL
PharmGKB PA38692 PharmGKB
UniProt A0AAQ5BHP6 ENTREZGENE, UniProtKB/TrEMBL
  B3GN7_HUMAN UniProtKB/Swiss-Prot
  B3KWY4 ENTREZGENE
  B7WNP0 ENTREZGENE
  Q8NFL0 ENTREZGENE
UniProt Secondary B3KWY4 UniProtKB/Swiss-Prot
  B7WNP0 UniProtKB/Swiss-Prot