B3GNT7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7) - Rat Genome Database

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Gene: B3GNT7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7) Canis lupus familiaris
Analyze
Symbol: B3GNT7
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
RGD ID: 12387664
Description: ENCODES a protein that exhibits acetylglucosaminyltransferase activity (ortholog); INVOLVED IN keratan sulfate biosynthetic process (ortholog); ASSOCIATED WITH Joubert Syndrome 22 (ortholog); Perlman syndrome (ortholog); FOUND IN integral component of membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,287,937 - 43,293,416 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,847,137 - 43,852,530 (+)NCBI
ROS_Cfam_1.02543,545,318 - 43,550,903 (+)NCBI
ROS_Cfam_1.0 Ensembl2543,545,301 - 43,550,890 (+)Ensembl
UMICH_Zoey_3.12543,472,896 - 43,478,886 (+)NCBI
UNSW_CanFamBas_1.02543,316,106 - 43,321,691 (+)NCBI
UU_Cfam_GSD_1.02543,471,442 - 43,477,003 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
B3GNT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,287,937 - 43,293,416 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,847,137 - 43,852,530 (+)NCBI
ROS_Cfam_1.02543,545,318 - 43,550,903 (+)NCBI
ROS_Cfam_1.0 Ensembl2543,545,301 - 43,550,890 (+)Ensembl
UMICH_Zoey_3.12543,472,896 - 43,478,886 (+)NCBI
UNSW_CanFamBas_1.02543,316,106 - 43,321,691 (+)NCBI
UU_Cfam_GSD_1.02543,471,442 - 43,477,003 (+)NCBI
B3GNT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,395,710 - 231,401,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2231,395,710 - 231,401,164 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,260,421 - 232,265,875 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,968,579 - 231,971,928 (+)NCBINCBI36hg18NCBI36
Build 342232,085,839 - 232,089,189NCBI
Celera2226,036,697 - 226,042,236 (+)NCBI
Cytogenetic Map2q37.1NCBI
HuRef2224,101,622 - 224,107,116 (+)NCBIHuRef
CHM1_12232,266,140 - 232,271,695 (+)NCBICHM1_1
T2T-CHM13v2.02231,880,160 - 231,885,616 (+)NCBI
B3gnt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,230,943 - 86,235,027 (+)NCBIGRCm39mm39
GRCm39 Ensembl186,230,554 - 86,235,027 (+)Ensembl
GRCm38186,303,221 - 86,307,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,302,832 - 86,307,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,199,796 - 88,203,880 (+)NCBIGRCm37mm9NCBIm37
MGSCv36188,134,639 - 88,138,476 (+)NCBImm8
Celera189,271,394 - 89,275,478 (+)NCBICelera
Cytogenetic Map1C5NCBI
B3gnt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2986,956,220 - 86,960,171 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl986,956,220 - 86,960,170 (+)Ensembl
Rnor_6.0993,326,283 - 93,330,234 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,326,283 - 93,330,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0993,055,878 - 93,059,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4985,069,241 - 85,073,192NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1985,252,659 - 85,256,610NCBI
Cytogenetic Map9q35NCBI
B3gnt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554534,179,547 - 4,180,737 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554534,178,544 - 4,180,738 (-)NCBIChiLan1.0ChiLan1.0
B3GNT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v02B118,644,899 - 118,650,463 (+)NCBIMhudiblu_PPA_v0panPan3
B3gnt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,441,557 - 185,443,920 (+)NCBI
SpeTri2.0NW_0049365255,495,815 - 5,508,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15132,127,396 - 132,131,917 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115132,127,386 - 132,131,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,843,455 - 145,846,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,429,516 - 117,435,910 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604082,013,921 - 82,018,409 (-)NCBIVero_WHO_p1.0
B3gnt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248434,603,181 - 4,605,744 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248434,603,014 - 4,606,757 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_038435761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038435763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038458715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038510693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038574174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038638468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_543284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00845041983   ⟹   ENSCAFP00845032926
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2543,545,301 - 43,550,890 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845042010   ⟹   ENSCAFP00845032949
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2543,546,496 - 43,549,614 (+)Ensembl
RefSeq Acc Id: XM_038435761   ⟹   XP_038291689
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02543,546,525 - 43,550,903 (+)NCBI
RefSeq Acc Id: XM_038435762   ⟹   XP_038291690
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02543,547,688 - 43,550,903 (+)NCBI
RefSeq Acc Id: XM_038435763   ⟹   XP_038291691
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02543,545,318 - 43,550,903 (+)NCBI
RefSeq Acc Id: XM_038458715   ⟹   XP_038314643
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2543,848,151 - 43,852,530 (+)NCBI
RefSeq Acc Id: XM_038510691   ⟹   XP_038366619
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12543,475,628 - 43,478,886 (+)NCBI
RefSeq Acc Id: XM_038510692   ⟹   XP_038366620
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12543,474,510 - 43,478,886 (+)NCBI
RefSeq Acc Id: XM_038510693   ⟹   XP_038366621
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12543,472,896 - 43,478,886 (+)NCBI
RefSeq Acc Id: XM_038574172   ⟹   XP_038430100
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02543,472,621 - 43,477,003 (+)NCBI
RefSeq Acc Id: XM_038574173   ⟹   XP_038430101
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02543,473,784 - 43,477,003 (+)NCBI
RefSeq Acc Id: XM_038574174   ⟹   XP_038430102
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02543,471,442 - 43,477,003 (+)NCBI
RefSeq Acc Id: XM_038638466   ⟹   XP_038494394
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02543,317,309 - 43,321,691 (+)NCBI
RefSeq Acc Id: XM_038638467   ⟹   XP_038494395
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02543,318,472 - 43,321,691 (+)NCBI
RefSeq Acc Id: XM_038638468   ⟹   XP_038494396
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02543,316,106 - 43,321,691 (+)NCBI
RefSeq Acc Id: XM_543284   ⟹   XP_543284
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12543,287,937 - 43,293,416 (+)NCBI
Dog10K_Boxer_Tasha2543,847,137 - 43,852,530 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_543284   ⟸   XM_543284
- Peptide Label: isoform X3
- UniProtKB: F1Q1M4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038366621   ⟸   XM_038510693
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038366620   ⟸   XM_038510692
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038366619   ⟸   XM_038510691
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038494396   ⟸   XM_038638468
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038494394   ⟸   XM_038638466
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038494395   ⟸   XM_038638467
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038291691   ⟸   XM_038435763
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038291689   ⟸   XM_038435761
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038291690   ⟸   XM_038435762
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038314643   ⟸   XM_038458715
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038430102   ⟸   XM_038574174
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038430100   ⟸   XM_038574172
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038430101   ⟸   XM_038574173
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCAFP00845032926   ⟸   ENSCAFT00845041983
RefSeq Acc Id: ENSCAFP00845032949   ⟸   ENSCAFT00845042010

Damaging Variants


Assembly: CanFam3.1
Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
25 43291501 43291502 A T snv Malinois (MA142)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000010979 UniProtKB/TrEMBL
  ENSCAFG00845023787 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000016231 UniProtKB/TrEMBL
  ENSCAFP00845032926 ENTREZGENE
  ENSCAFP00845032949 ENTREZGENE
Ensembl Transcript ENSCAFT00000017530 UniProtKB/TrEMBL
  ENSCAFT00845041983 ENTREZGENE
  ENSCAFT00845042010 ENTREZGENE
InterPro Glyco_trans_31 UniProtKB/TrEMBL
NCBI Gene B3GNT7 ENTREZGENE
PANTHER PTHR11214 UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/TrEMBL
UniProt F1Q1M4 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:38344 ENTREZGENE