B3gnt7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7) - Rat Genome Database

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Gene: B3gnt7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7) Mus musculus
Analyze
Symbol: B3gnt7
Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
RGD ID: 1321570
MGI Page MGI
Description: Predicted to enable acetylglucosaminyltransferase activity. Involved in keratan sulfate biosynthetic process. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in several structures, including alimentary system; brain; genitourinary system; respiratory system; and sensory organ. Orthologous to human B3GNT7 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: beta-1,3-Gn-T7; beta-1,3-N-acetylglucosaminyltransferase 7; beta-3Gn; beta-3GnT7; beta3Gn-T7; BGnT-7; C330001H22Rik
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,230,943 - 86,235,027 (+)NCBIGRCm39mm39
GRCm39 Ensembl186,230,554 - 86,235,027 (+)Ensembl
GRCm38186,303,221 - 86,307,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,302,832 - 86,307,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,199,796 - 88,203,880 (+)NCBIGRCm37mm9NCBIm37
MGSCv36188,134,639 - 88,138,476 (+)NCBImm8
Celera189,271,394 - 89,275,478 (+)NCBICelera
Cytogenetic Map1C5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12061784   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:16465591  
PMID:18799693   PMID:21677750   PMID:21873635   PMID:24194600   PMID:27626380   PMID:27793834   PMID:29625490  


Genomics

Comparative Map Data
B3gnt7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,230,943 - 86,235,027 (+)NCBIGRCm39mm39
GRCm39 Ensembl186,230,554 - 86,235,027 (+)Ensembl
GRCm38186,303,221 - 86,307,305 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,302,832 - 86,307,305 (+)EnsemblGRCm38mm10GRCm38
MGSCv37188,199,796 - 88,203,880 (+)NCBIGRCm37mm9NCBIm37
MGSCv36188,134,639 - 88,138,476 (+)NCBImm8
Celera189,271,394 - 89,275,478 (+)NCBICelera
Cytogenetic Map1C5NCBI
B3GNT7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,395,710 - 231,401,164 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2231,395,710 - 231,401,164 (+)EnsemblGRCh38hg38GRCh38
GRCh372232,260,421 - 232,265,875 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362231,968,579 - 231,971,928 (+)NCBINCBI36hg18NCBI36
Build 342232,085,839 - 232,089,189NCBI
Celera2226,036,697 - 226,042,236 (+)NCBI
Cytogenetic Map2q37.1NCBI
HuRef2224,101,622 - 224,107,116 (+)NCBIHuRef
CHM1_12232,266,140 - 232,271,695 (+)NCBICHM1_1
T2T-CHM13v2.02231,880,160 - 231,885,616 (+)NCBI
B3gnt7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2986,956,220 - 86,960,171 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl986,956,220 - 86,960,170 (+)Ensembl
Rnor_6.0993,326,283 - 93,330,234 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,326,283 - 93,330,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0993,055,878 - 93,059,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4985,069,241 - 85,073,192NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1985,252,659 - 85,256,610NCBI
Cytogenetic Map9q35NCBI
B3gnt7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554534,179,547 - 4,180,737 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554534,178,544 - 4,180,738 (-)NCBIChiLan1.0ChiLan1.0
B3GNT7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v02B118,644,899 - 118,650,463 (+)NCBIMhudiblu_PPA_v0panPan3
B3GNT7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,287,937 - 43,293,416 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,847,137 - 43,852,530 (+)NCBI
ROS_Cfam_1.02543,545,318 - 43,550,903 (+)NCBI
ROS_Cfam_1.0 Ensembl2543,545,301 - 43,550,890 (+)Ensembl
UMICH_Zoey_3.12543,472,896 - 43,478,886 (+)NCBI
UNSW_CanFamBas_1.02543,316,106 - 43,321,691 (+)NCBI
UU_Cfam_GSD_1.02543,471,442 - 43,477,003 (+)NCBI
B3gnt7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303185,441,557 - 185,443,920 (+)NCBI
SpeTri2.0NW_0049365255,495,815 - 5,508,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GNT7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15132,127,396 - 132,131,917 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115132,127,386 - 132,131,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,843,455 - 145,846,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GNT7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,429,516 - 117,435,910 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604082,013,921 - 82,018,409 (-)NCBIVero_WHO_p1.0
B3gnt7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248434,603,181 - 4,605,744 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248434,603,014 - 4,606,757 (+)NCBIHetGla_female_1.0hetGla2


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17554919192941077Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177123115110536075Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17747663795827725Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17797663787927722Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17897771790927722Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179858683113858791Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179858683113858791Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1302029Sst1_msusceptibility to tuberculosis 1 (mouse)Not determined18165211487130822Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18197771588427722Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182832635116832635Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182832635116832635Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18342011988552630Mouse
25394563Skmw48_mskeletal muscle weight 48, EDL (mouse)18547800687323158Mouse
11667074Led2_mlate embryonic death 2 (mouse)185696027117195081Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:434
Count of miRNA genes:314
Interacting mature miRNAs:348
Transcripts:ENSMUST00000113306
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF502429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK133674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV456413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB591167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC029550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX521960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000113306   ⟹   ENSMUSP00000108931
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,230,956 - 86,235,027 (+)Ensembl
GRCm38.p6 Ensembl186,303,234 - 86,307,305 (+)Ensembl
RefSeq Acc Id: ENSMUST00000188695   ⟹   ENSMUSP00000140392
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,231,253 - 86,233,571 (+)Ensembl
GRCm38.p6 Ensembl186,303,531 - 86,305,849 (+)Ensembl
RefSeq Acc Id: ENSMUST00000189618
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl186,230,554 - 86,232,429 (+)Ensembl
GRCm38.p6 Ensembl186,302,832 - 86,304,707 (+)Ensembl
RefSeq Acc Id: NM_145222   ⟹   NP_660257
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39186,230,943 - 86,235,027 (+)NCBI
GRCm38186,303,221 - 86,307,305 (+)ENTREZGENE
MGSCv37188,199,796 - 88,203,880 (+)RGD
Celera189,271,394 - 89,275,478 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_660257   ⟸   NM_145222
- UniProtKB: Q8K0J2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000108931   ⟸   ENSMUST00000113306
RefSeq Acc Id: ENSMUSP00000140392   ⟸   ENSMUST00000188695

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8K0J2-F1-model_v2 AlphaFold Q8K0J2 1-397 view protein structure

Promoters
RGD ID:6874316
Promoter ID:EPDNEW_M609
Type:initiation region
Name:B3gnt7_2
Description:Mus musculus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M610  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38186,303,234 - 86,303,294EPDNEW
RGD ID:6874318
Promoter ID:EPDNEW_M610
Type:initiation region
Name:B3gnt7_1
Description:Mus musculus UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase7 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M609  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38186,303,496 - 86,303,556EPDNEW
RGD ID:6817400
Promoter ID:MM_KWN:1470
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell
Transcripts:UC007BVK.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36188,199,694 - 88,200,194 (+)MPROMDB
RGD ID:6848931
Promoter ID:MM_XEF:241
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_001001245,   NM_001092198,   NM_201294
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36188,202,161 - 88,202,661 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2384394 AgrOrtholog
Ensembl Genes ENSMUSG00000047290
  ENSMUSG00000079445 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000108931 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140392 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000113306 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000188695 UniProtKB/TrEMBL
InterPro Glyco_trans_31 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:227327 UniProtKB/Swiss-Prot
MGD MGI:2384394 ENTREZGENE
NCBI Gene 227327 ENTREZGENE
PANTHER PTHR11214 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Galactosyl_T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen B3gnt7 PhenoGen
UniProt A0A087WQY3_MOUSE UniProtKB/TrEMBL
  A0PJH7_MOUSE UniProtKB/TrEMBL
  B3GN7_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q3U3L9 UniProtKB/Swiss-Prot
  Q3V283 UniProtKB/Swiss-Prot
  Q6PA02 UniProtKB/Swiss-Prot
  Q8BJS5 UniProtKB/Swiss-Prot
  Q8K437 UniProtKB/Swiss-Prot