Ccl9 (C-C motif chemokine ligand 9) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ccl9 (C-C motif chemokine ligand 9) Mus musculus
Analyze
Symbol: Ccl9
Name: C-C motif chemokine ligand 9 (Ensembl:chemokine (C-C motif) ligand 9)
RGD ID: 1321540
MGI Page MGI
Description: Predicted to enable CCR1 chemokine receptor binding activity; chemoattractant activity; and chemokine activity. Acts upstream of or within negative regulation of myoblast differentiation. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including alimentary system; brain; eye; genitourinary system; and limb. Orthologous to human CCL15 (C-C motif chemokine ligand 15) and CCL23 (C-C motif chemokine ligand 23).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C-C motif chemokine 9; CCF18; chemokine (C-C motif) ligand 9; macrophage inflammatory protein 1-gamma; macrophage inflammatory protein-related protein 2; MIP-1 gamma; MIP-1-gamma; MRP; MRP-2; Scy; Scya; Scya10; Scya9; small inducible cytokine A10; small inducible cytokine A9; small-inducible cytokine A9
RGD Orthologs
Human
Bonobo
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,463,743 - 83,469,462 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,463,745 - 83,469,462 (-)EnsemblGRCm39 Ensembl
GRCm381183,572,917 - 83,578,636 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,572,919 - 83,578,636 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,386,419 - 83,392,138 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,389,112 - 83,394,831 (-)NCBIMGSCv36mm8
Celera1193,174,716 - 93,180,435 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.81NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (EXP)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (EXP)
aflatoxin B1  (EXP)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cannabidiol  (EXP)
carbon nanotube  (EXP,ISO)
cetirizine  (EXP)
CGP 52608  (ISO)
chloroquine  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (EXP,ISO)
cobalt atom  (EXP)
crocidolite asbestos  (EXP)
cyclophosphamide  (EXP)
cyproconazole  (EXP)
D-glucose  (EXP)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
diclofenac  (EXP)
diethyl malate  (EXP)
diethylstilbestrol  (EXP)
dioxygen  (EXP)
epoxiconazole  (EXP)
ethanol  (EXP)
folic acid  (EXP)
fructose  (EXP)
genistein  (EXP)
glucose  (EXP)
graphene oxide  (EXP)
griseofulvin  (EXP)
isoprenaline  (EXP)
lipopolysaccharide  (EXP)
LY294002  (EXP)
medroxyprogesterone acetate  (ISO)
melatonin  (EXP)
methidathion  (EXP)
methylmercury chloride  (EXP)
microcystin-LR  (EXP)
monosodium L-glutamate  (EXP)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
naphthalene  (EXP)
nickel atom  (EXP)
nickel dichloride  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phorbol 13-acetate 12-myristate  (EXP)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (EXP)
propiconazole  (EXP)
pyrrolidine dithiocarbamate  (EXP)
serpentine asbestos  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (EXP)
tetrachloromethane  (EXP)
titanium dioxide  (EXP)
TMC-120A  (EXP)
toluene 2,4-diisocyanate  (EXP)
tremolite asbestos  (EXP)
trimellitic anhydride  (EXP)
troglitazone  (EXP)
wortmannin  (EXP)
zinc atom  (EXP)
zinc(0)  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Hepatocyte-Specific Arid1a Deficiency Initiates Mouse Steatohepatitis and Hepatocellular Carcinoma. Fang JZ, etal., PLoS One. 2015 Nov 16;10(11):e0143042. doi: 10.1371/journal.pone.0143042. eCollection 2015.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7594550   PMID:7650394   PMID:8597875   PMID:9177770   PMID:10235110   PMID:10349636   PMID:10438970   PMID:10995569   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11500837  
PMID:12080938   PMID:12173416   PMID:12397598   PMID:12477932   PMID:12960300   PMID:14610273   PMID:15265944   PMID:15905581   PMID:15961314   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:16829211   PMID:17160016   PMID:18087045   PMID:19171873   PMID:19883904   PMID:20498053   PMID:20799334   PMID:21308776   PMID:21677750   PMID:21873635   PMID:22706340   PMID:23341629  
PMID:23722213   PMID:23844157   PMID:23858028   PMID:24194600   PMID:25209981   PMID:26411367   PMID:26483204   PMID:26839965   PMID:27626380   PMID:27888192   PMID:29348127   PMID:29798841  
PMID:29891873   PMID:30365155   PMID:34321999  


Genomics

Comparative Map Data
Ccl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,463,743 - 83,469,462 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,463,745 - 83,469,462 (-)EnsemblGRCm39 Ensembl
GRCm381183,572,917 - 83,578,636 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1183,572,919 - 83,578,636 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,386,419 - 83,392,138 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,389,112 - 83,394,831 (-)NCBIMGSCv36mm8
Celera1193,174,716 - 93,180,435 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1150.81NCBI
CCL23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381736,013,058 - 36,017,972 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1736,013,056 - 36,017,972 (-)EnsemblGRCh38hg38GRCh38
GRCh371734,340,098 - 34,345,009 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361731,364,210 - 31,369,118 (-)NCBINCBI36Build 36hg18NCBI36
Build 341731,364,209 - 31,369,118NCBI
Celera1731,249,651 - 31,254,560 (-)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1730,524,964 - 30,529,874 (-)NCBIHuRef
CHM1_11734,404,627 - 34,409,539 (-)NCBICHM1_1
T2T-CHM13v2.01736,960,963 - 36,965,877 (-)NCBIT2T-CHM13v2.0
CCL23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21928,459,908 - 28,464,833 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11730,338,865 - 30,343,790 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01720,778,008 - 20,782,929 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11721,073,882 - 21,078,794 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1721,073,882 - 21,078,794 (+)Ensemblpanpan1.1panPan2

Variants

.
Variants in Ccl9
129 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:750
Count of miRNA genes:505
Interacting mature miRNAs:562
Transcripts:ENSMUST00000019266, ENSMUST00000136131
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115775466091754758Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15850803087695238Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5871926685066529Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116168682088699728Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116215600596156153Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162590826109390826Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116331940794063918Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116483033698830473Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116483033698830473Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116483033698830473Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166733420100733652Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166733420100733652Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166733420100733652Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166733420100733652Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66733420100733652Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166733420100733652Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168190826101890826Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170691198104691366Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170691198104691366Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170691198104691366Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170691198104691366Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172019649106019734Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117220979684731462Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172726125106726289Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172818615106818733Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172818615106818733Mouse
11038695Par8_mpulmonary adenoma resistance 8 (mouse)1177063779111063918Mouse
1301414Heal10_mwound healing/regeneration 10 (mouse)Not determined1177437183111437322Mouse
10045616Heal25_mwound healing/regeneration 25 (mouse)Not determined1177437183111437322Mouse
1302124Eae7_msusceptibility to experimental allergic encephalomyelitis 7 (mouse)Not determined117757387399377820Mouse
10413882Moe1_mmodifier of epilepsy 1 (mouse)1177770978111771099Mouse
1301640Lore4_mloss of righting induced by ethanol 4 (mouse)Not determined1179156009107616472Mouse
14746970Manh71_mmandible shape 71 (mouse)1179416257113416257Mouse
10043865T2dm5sa_mtype 2 diabetes mellitus 5 in SMXA RI mice (mouse)Not determined1179813759104502698Mouse
27226758Femd3_mfemur midshaft diameter 3, 5 week (mouse)1180890826101890826Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse

Markers in Region
U15209  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,575,168 - 83,575,336UniSTSGRCm38
MGSCv371183,388,670 - 83,388,838UniSTSGRCm37
Celera1193,176,967 - 93,177,135UniSTS
Cytogenetic Map11CUniSTS
cM Map1147.4UniSTS
Whitehead_YAC11 UniSTS
Ccl9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381183,574,716 - 83,575,463UniSTSGRCm38
MGSCv371183,388,218 - 83,388,965UniSTSGRCm37
Celera1193,176,515 - 93,177,262UniSTS
Cytogenetic Map11CUniSTS
cM Map1147.4UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS
Scya9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11CUniSTS
cM Map1147.4UniSTS
Ccl9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11CUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_011338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB051897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128196 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF128204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL596122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY902335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE626870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB950873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS072950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U15209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U19482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U49513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000019266   ⟹   ENSMUSP00000019266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,463,745 - 83,469,462 (-)Ensembl
GRCm38.p6 Ensembl1183,572,919 - 83,578,636 (-)Ensembl
RefSeq Acc Id: ENSMUST00000136131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1183,466,144 - 83,467,968 (-)Ensembl
GRCm38.p6 Ensembl1183,575,318 - 83,577,142 (-)Ensembl
RefSeq Acc Id: NM_011338   ⟹   NP_035468
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391183,463,743 - 83,469,462 (-)NCBI
GRCm381183,572,917 - 83,578,636 (-)ENTREZGENE
MGSCv371183,386,419 - 83,392,138 (-)RGD
Celera1193,174,716 - 93,180,435 (-)RGD
cM Map11 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_035468 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA92583 (Get FASTA)   NCBI Sequence Viewer  
  AAB02198 (Get FASTA)   NCBI Sequence Viewer  
  AAB17120 (Get FASTA)   NCBI Sequence Viewer  
  AAF22536 (Get FASTA)   NCBI Sequence Viewer  
  AAF22537 (Get FASTA)   NCBI Sequence Viewer  
  AAF22538 (Get FASTA)   NCBI Sequence Viewer  
  AAF22539 (Get FASTA)   NCBI Sequence Viewer  
  AAF22540 (Get FASTA)   NCBI Sequence Viewer  
  AAF22541 (Get FASTA)   NCBI Sequence Viewer  
  AAF22542 (Get FASTA)   NCBI Sequence Viewer  
  AAF22543 (Get FASTA)   NCBI Sequence Viewer  
  AAF22544 (Get FASTA)   NCBI Sequence Viewer  
  AAF22545 (Get FASTA)   NCBI Sequence Viewer  
  AAI39319 (Get FASTA)   NCBI Sequence Viewer  
  AAI45963 (Get FASTA)   NCBI Sequence Viewer  
  AAX90620 (Get FASTA)   NCBI Sequence Viewer  
  BAB18730 (Get FASTA)   NCBI Sequence Viewer  
  BAE30139 (Get FASTA)   NCBI Sequence Viewer  
  BAE30318 (Get FASTA)   NCBI Sequence Viewer  
  BAE30578 (Get FASTA)   NCBI Sequence Viewer  
  BAE32640 (Get FASTA)   NCBI Sequence Viewer  
  BAE32747 (Get FASTA)   NCBI Sequence Viewer  
  BAE33004 (Get FASTA)   NCBI Sequence Viewer  
  BAE33005 (Get FASTA)   NCBI Sequence Viewer  
  CAI93682 (Get FASTA)   NCBI Sequence Viewer  
  EDL15711 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000019266
  ENSMUSP00000019266.6
GenBank Protein P51670 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_035468   ⟸   NM_011338
- Peptide Label: precursor
- UniProtKB: Q5QNW2 (UniProtKB/Swiss-Prot),   P51670 (UniProtKB/Swiss-Prot),   Q3U9T8 (UniProtKB/TrEMBL),   Q2M4I0 (UniProtKB/TrEMBL),   Q3U3N8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000019266   ⟸   ENSMUST00000019266
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P51670-F1-model_v2 AlphaFold P51670 1-122 view protein structure

Promoters
RGD ID:6820579
Promoter ID:MM_KWN:8901
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000001962
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361183,390,361 - 83,391,412 (-)MPROMDB
RGD ID:6820578
Promoter ID:MM_KWN:8902
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Liver
Transcripts:ENSMUST00000108129,   NM_011338
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361183,391,714 - 83,392,214 (-)MPROMDB
RGD ID:8675910
Promoter ID:EPDNEW_M15986
Type:initiation region
Name:Ccl9_1
Description:Mus musculus chemokine (C-C motif) ligand 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15987  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381183,578,503 - 83,578,563EPDNEW
RGD ID:8675926
Promoter ID:EPDNEW_M15987
Type:initiation region
Name:Ccl9_2
Description:Mus musculus chemokine (C-C motif) ligand 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15986  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381183,578,633 - 83,578,693EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104533 AgrOrtholog
Ensembl Genes ENSMUSG00000019122 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000019266 ENTREZGENE
  ENSMUST00000019266.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.40.50.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_CC_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104533 ENTREZGENE
NCBI Gene 20308 ENTREZGENE
PANTHER C-C MOTIF CHEMOKINE 15 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12015 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam IL8 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccl9 PhenoGen
PROSITE SMALL_CYTOKINES_CC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SCY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CCL9_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q2M4I0 ENTREZGENE, UniProtKB/TrEMBL
  Q3U3N8 ENTREZGENE, UniProtKB/TrEMBL
  Q3U9T8 ENTREZGENE, UniProtKB/TrEMBL
  Q3UAJ6_MOUSE UniProtKB/TrEMBL
  Q5QNW2 ENTREZGENE
UniProt Secondary Q5QNW2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Ccl9  C-C motif chemokine ligand 9  Ccl9  chemokine (C-C motif) ligand 9  Symbol and/or name change 5135510 APPROVED