Phlda3 (pleckstrin homology like domain, family A, member 3) - Rat Genome Database

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Gene: Phlda3 (pleckstrin homology like domain, family A, member 3) Mus musculus
Analyze
Symbol: Phlda3
Name: pleckstrin homology like domain, family A, member 3
RGD ID: 1321442
MGI Page MGI
Description: Predicted to enable phosphatidylinositol phosphate binding activity and phosphatidylinositol-3,4-bisphosphate binding activity. Predicted to be involved in intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and positive regulation of apoptotic process. Predicted to be located in cytoplasm. Predicted to be active in plasma membrane. Is expressed in several structures, including extraembryonic component; genitourinary system; hemolymphoid system; intestine; and liver. Orthologous to human PHLDA3 (pleckstrin homology like domain family A member 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: pleckstrin homology-like domain family A member 3; pleckstrin homology-like domain, family A, member 3; TDAG/lpl homolog 1; TDAG51/Ipl homolog 1; Tih; Tih1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,693,823 - 135,696,872 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,693,857 - 135,696,874 (+)EnsemblGRCm39 Ensembl
GRCm381135,766,085 - 135,769,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,766,119 - 135,769,136 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,662,662 - 137,665,711 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,582,544 - 137,585,545 (+)NCBIMGSCv36mm8
Celera1138,400,219 - 138,403,272 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(S)-colchicine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
1,4-dioxane  (EXP)
1-nitropropane  (ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-diaminotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-acetamidofluorene  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
2-nitro-p-phenylenediamine  (ISO)
2-nitrofluorene  (ISO)
2-nitropropane  (ISO)
4,4'-sulfonyldiphenol  (EXP)
4-(N-nitrosomethylamino)-1-(3-pyridyl)butan-1-one  (ISO)
4-acetylaminofluorene  (ISO)
4-nitro-1,2-phenylenediamine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
adefovir pivoxil  (ISO)
adenine  (ISO)
aflatoxin B1  (EXP,ISO)
aristolochic acid A  (ISO)
arsenous acid  (EXP)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
beta-lapachone  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (EXP)
butan-1-ol  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (EXP)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
chloroacetaldehyde  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
chrysene  (EXP)
cidofovir anhydrous  (ISO)
cisplatin  (EXP,ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
dibenz[a,h]anthracene  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (EXP)
dioxygen  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP,ISO)
ethyl methanesulfonate  (ISO)
etoposide  (EXP)
fenamidone  (EXP)
fenofibrate  (ISO)
folic acid  (EXP)
formaldehyde  (ISO)
furan  (EXP)
Heptachlor epoxide  (EXP)
hydroxyurea  (ISO)
ifosfamide  (ISO)
indoline  (ISO)
inulin  (EXP)
iron dichloride  (ISO)
iron(III) nitrilotriacetate  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
lead(0)  (ISO)
leflunomide  (EXP,ISO)
linezolid  (ISO)
lipopolysaccharide  (ISO)
manganese(II) chloride  (ISO)
metformin  (EXP,ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
mitomycin C  (EXP)
MK-2206  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (EXP,ISO)
N-Nitrosopyrrolidine  (ISO)
ochratoxin A  (ISO)
orphenadrine  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pinostrobin  (ISO)
pirinixic acid  (EXP,ISO)
propanal  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
Soman  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (EXP,ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (EXP)
thiazoles  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP)
topotecan  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
trovafloxacin  (EXP)
Tungsten carbide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
plasma membrane  (IBA,ISO,ISS)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10594239   PMID:11042159   PMID:11076861   PMID:12032310   PMID:12374806   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:21267068   PMID:21873635   PMID:23375831   PMID:23974039   PMID:24912192   PMID:25809501   PMID:28007900   PMID:28588267   PMID:29121094  
PMID:31178404   PMID:31426686   PMID:31492921   PMID:33601405   PMID:34242585   PMID:34592332   PMID:35593225   PMID:36012294   PMID:36965748   PMID:37558703  


Genomics

Comparative Map Data
Phlda3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,693,823 - 135,696,872 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,693,857 - 135,696,874 (+)EnsemblGRCm39 Ensembl
GRCm381135,766,085 - 135,769,134 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,766,119 - 135,769,136 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,662,662 - 137,665,711 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361137,582,544 - 137,585,545 (+)NCBIMGSCv36mm8
Celera1138,400,219 - 138,403,272 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map159.26NCBI
PHLDA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381201,464,278 - 201,469,188 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1201,464,278 - 201,469,237 (-)EnsemblGRCh38hg38GRCh38
GRCh371201,433,406 - 201,438,316 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361199,701,245 - 199,704,922 (-)NCBINCBI36Build 36hg18NCBI36
Build 341198,166,279 - 198,169,956NCBI
Celera1174,558,492 - 174,562,169 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1172,600,628 - 172,604,316 (-)NCBIHuRef
CHM1_11202,856,735 - 202,860,431 (-)NCBICHM1_1
T2T-CHM13v2.01200,722,059 - 200,726,971 (-)NCBIT2T-CHM13v2.0
Phlda3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,745,003 - 49,748,088 (+)NCBIGRCr8
mRatBN7.21347,193,250 - 47,196,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1347,193,086 - 47,196,335 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,802,074 - 49,805,158 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01351,090,139 - 51,093,225 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01348,353,354 - 48,356,441 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01352,588,917 - 52,592,002 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1352,588,917 - 52,592,001 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,637,217 - 57,640,302 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,789,678 - 48,793,999 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,803,734 - 48,808,041 (+)NCBI
Celera1347,510,714 - 47,513,799 (+)NCBICelera
Cytogenetic Map13q13NCBI
Phlda3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540637,579,006 - 37,582,230 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540637,579,006 - 37,582,230 (-)NCBIChiLan1.0ChiLan1.0
PHLDA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,912,241 - 47,916,187 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,876,910 - 47,880,873 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,063,775 - 177,067,714 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11181,365,063 - 181,368,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1181,367,976 - 181,368,359 (-)Ensemblpanpan1.1panPan2
PHLDA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.171,438,539 - 1,440,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha71,488,304 - 1,490,785 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.071,444,885 - 1,447,366 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl71,444,921 - 1,445,304 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.171,432,439 - 1,434,920 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.071,540,393 - 1,542,879 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.071,564,820 - 1,567,301 (+)NCBIUU_Cfam_GSD_1.0
Phlda3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,746,903 - 73,750,232 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,981,602 - 2,984,903 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,981,632 - 2,984,906 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHLDA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1023,826,874 - 23,827,245 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11023,824,181 - 23,827,428 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,232,722 - 28,235,987 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PHLDA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,945,013 - 27,948,870 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2527,945,608 - 27,945,991 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605528,740,957 - 28,744,831 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phlda3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248079,259,456 - 9,262,531 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248079,259,437 - 9,262,528 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:570
Count of miRNA genes:382
Interacting mature miRNAs:426
Transcripts:ENSMUST00000038945, ENSMUST00000136445
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
27226714Metcl1_mmetatarsal-calcaneal length 1, 5 week (mouse)1121727729139727738Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
13504831Bacszq1_mbaculum size QTL 1 (mouse)1134331161148128608Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse

Markers in Region
RH133254  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381135,768,880 - 135,769,092UniSTSGRCm38
MGSCv371137,665,457 - 137,665,669UniSTSGRCm37
Celera1138,403,019 - 138,403,230UniSTS
Cytogenetic Map1E4UniSTS
cM Map175.0UniSTS
AF151099  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381135,766,895 - 135,767,005UniSTSGRCm38
MGSCv371137,663,472 - 137,663,582UniSTSGRCm37
Celera1138,401,029 - 138,401,139UniSTS
Cytogenetic Map1E4UniSTS
cM Map175.0UniSTS
Whitehead/MRC_RH11929.69UniSTS
Phlda3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1E4UniSTS
cM Map175.0UniSTS
Phlda3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1E4UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC162441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF151099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI834921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000038945   ⟹   ENSMUSP00000040614
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,693,857 - 135,696,874 (+)Ensembl
GRCm38.p6 Ensembl1135,766,119 - 135,769,136 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1135,694,872 - 135,696,660 (+)Ensembl
GRCm38.p6 Ensembl1135,767,134 - 135,768,922 (+)Ensembl
RefSeq Acc Id: NM_013750   ⟹   NP_038778
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391135,693,823 - 135,696,872 (+)NCBI
GRCm381135,766,085 - 135,769,134 (+)ENTREZGENE
MGSCv371137,662,662 - 137,665,711 (+)RGD
Celera1138,400,219 - 138,403,272 (+)RGD
cM Map1 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_038778 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD42080 (Get FASTA)   NCBI Sequence Viewer  
  AAH23408 (Get FASTA)   NCBI Sequence Viewer  
  BAB22985 (Get FASTA)   NCBI Sequence Viewer  
  EDL39572 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000040614
  ENSMUSP00000040614.6
GenBank Protein Q9WV95 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_038778   ⟸   NM_013750
- UniProtKB: Q9WV95 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000040614   ⟸   ENSMUST00000038945
Protein Domains
PH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WV95-F1-model_v2 AlphaFold Q9WV95 1-125 view protein structure

Promoters
RGD ID:6875076
Promoter ID:EPDNEW_M989
Type:initiation region
Name:Phlda3_1
Description:Mus musculus pleckstrin homology like domain, family A, member3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381135,766,162 - 135,766,222EPDNEW
RGD ID:6818234
Promoter ID:MM_KWN:2215
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000052474,   OTTMUST00000052475
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361137,662,026 - 137,663,612 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1351485 AgrOrtholog
Ensembl Genes ENSMUSG00000041801 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000038945 ENTREZGENE
  ENSMUST00000038945.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.29.30 UniProtKB/Swiss-Prot
InterPro PH-like_dom_sf UniProtKB/Swiss-Prot
  PH_domain UniProtKB/Swiss-Prot
  PHLA1/2/3 UniProtKB/Swiss-Prot
KEGG Report mmu:27280 UniProtKB/Swiss-Prot
MGD MGI:1351485 ENTREZGENE
NCBI Gene 27280 ENTREZGENE
PANTHER PLECKSTRIN HOMOLOGY-LIKE DOMAIN FAMILY A MEMBER 3 UniProtKB/Swiss-Prot
  PTHR15478 UniProtKB/Swiss-Prot
Pfam PF00169 UniProtKB/Swiss-Prot
PhenoGen Phlda3 PhenoGen
SMART SM00233 UniProtKB/Swiss-Prot
Superfamily-SCOP PH domain-like UniProtKB/Swiss-Prot
UniProt PHLA3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-29 Phlda3  pleckstrin homology like domain, family A, member 3    pleckstrin homology-like domain, family A, member 3  Symbol and/or name change 5135510 APPROVED