Farsa (phenylalanyl-tRNA synthetase, alpha subunit) - Rat Genome Database
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Gene: Farsa (phenylalanyl-tRNA synthetase, alpha subunit) Mus musculus
Analyze
Symbol: Farsa
Name: phenylalanyl-tRNA synthetase, alpha subunit
RGD ID: 1321147
MGI Page MGI
Description: Predicted to have phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to localize to cytosol and phenylalanine-tRNA ligase complex. Is expressed in several structures, including alimentary system; central nervous system; heart; integumental system; and respiratory system. Orthologous to human FARSA (phenylalanyl-tRNA synthetase subunit alpha); PARTICIPATES IN phenylketonuria pathway; tyrosinemia type II pathway; tyrosinemia type III pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 0610012A19Rik; F; Farsla; phenylalanine--tRNA ligase alpha chain; phenylalanine--tRNA ligase alpha subunit; phenylalanine-tRNA synthetase-like, alpha subunit; phenylalanyl-tRNA synthetase alpha chain; phenylalanyl-tRNA synthetase alpha subunit; pheRS
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,583,597 - 85,595,886 (+)NCBIGRCm39mm39
GRCm38884,856,969 - 84,869,257 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,856,989 - 84,869,257 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,380,885 - 87,393,156 (+)NCBIGRCm37mm9NCBIm37
MGSCv36887,747,129 - 87,757,131 (+)NCBImm8
Celera889,156,659 - 89,168,787 (+)NCBICelera
Cytogenetic Map8C3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15747579   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24457600   PMID:25044020   PMID:28378742   PMID:28671696   PMID:30196744  
PMID:30457570   PMID:32325033  


Genomics

Comparative Map Data
Farsa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,583,597 - 85,595,886 (+)NCBIGRCm39mm39
GRCm38884,856,969 - 84,869,257 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,856,989 - 84,869,257 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,380,885 - 87,393,156 (+)NCBIGRCm37mm9NCBIm37
MGSCv36887,747,129 - 87,757,131 (+)NCBImm8
Celera889,156,659 - 89,168,787 (+)NCBICelera
Cytogenetic Map8C3NCBI
FARSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1912,922,479 - 12,934,037 (-)EnsemblGRCh38hg38GRCh38
GRCh381912,922,479 - 12,933,711 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371913,033,284 - 13,044,558 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,894,284 - 12,905,558 (-)NCBINCBI36hg18NCBI36
Build 341912,894,292 - 12,905,522NCBI
Celera1912,923,020 - 12,934,291 (-)NCBI
Cytogenetic Map19p13.13NCBI
HuRef1912,605,186 - 12,616,461 (-)NCBIHuRef
CHM1_11913,033,781 - 13,045,058 (-)NCBICHM1_1
Farsa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,969,255 - 25,978,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,969,255 - 25,978,776 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,944,878 - 36,954,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,947,663 - 24,957,186 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11924,952,488 - 24,962,012 (-)NCBI
Celera1922,848,305 - 22,857,809 (-)NCBICelera
Cytogenetic Map19q11NCBI
Farsa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,968,980 - 31,981,424 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,972,888 - 31,981,424 (-)NCBIChiLan1.0ChiLan1.0
FARSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11913,227,193 - 13,238,085 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,227,193 - 13,238,244 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01912,484,607 - 12,496,160 (-)NCBIMhudiblu_PPA_v0panPan3
FARSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2049,258,845 - 49,267,198 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12049,258,827 - 49,267,279 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Farsa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366591,982,343 - 1,990,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FARSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,105,428 - 66,118,191 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,105,393 - 66,114,867 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,271,545 - 66,280,456 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FARSA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,602,352 - 11,613,851 (-)NCBI
ChlSab1.1 Ensembl611,600,516 - 11,613,345 (-)Ensembl
Farsa
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624901492,673 - 505,815 (-)NCBI

Position Markers
UniSTS:235950  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,869,127 - 84,869,243UniSTSGRCm38
MGSCv37887,393,026 - 87,393,142UniSTSGRCm37
Celera889,168,657 - 89,168,773UniSTS
Cytogenetic Map8C3UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1405
Count of miRNA genes:575
Interacting mature miRNAs:693
Transcripts:ENSMUST00000003906, ENSMUST00000109754, ENSMUST00000129595, ENSMUST00000141480, ENSMUST00000144404, ENSMUST00000156970
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_025648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB853717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP754226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT010350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000003906   ⟹   ENSMUSP00000003906
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,856,989 - 84,869,257 (+)Ensembl
RefSeq Acc Id: ENSMUST00000109754   ⟹   ENSMUSP00000105376
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,857,017 - 84,869,257 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129595
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,856,995 - 84,869,256 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141480
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,867,563 - 84,869,010 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144404
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,857,009 - 84,867,026 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156970   ⟹   ENSMUSP00000120609
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,857,020 - 84,869,256 (+)Ensembl
RefSeq Acc Id: NM_025648   ⟹   NP_079924
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,615 - 85,595,886 (+)NCBI
GRCm38884,856,986 - 84,869,257 (+)NCBI
MGSCv37887,380,885 - 87,393,156 (+)RGD
Celera889,156,659 - 89,168,787 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152751
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,615 - 85,595,886 (+)NCBI
GRCm38884,856,986 - 84,869,257 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934867
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,598 - 85,595,886 (+)NCBI
RefSeq Acc Id: XR_004934868
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,597 - 85,595,524 (+)NCBI
RefSeq Acc Id: XR_387772
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,599 - 85,595,886 (+)NCBI
GRCm38884,856,969 - 84,869,257 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_079924   ⟸   NM_025648
- UniProtKB: Q8C0C7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000003906   ⟸   ENSMUST00000003906
RefSeq Acc Id: ENSMUSP00000105376   ⟸   ENSMUST00000109754
RefSeq Acc Id: ENSMUSP00000120609   ⟸   ENSMUST00000156970
Promoters
RGD ID:8667699
Promoter ID:EPDNEW_M11881
Type:initiation region
Name:Farsa_1
Description:Mus musculus phenylalanyl-tRNA synthetase, alpha subunit , transcriptvariant 2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,857,009 - 84,857,069EPDNEW
RGD ID:6843225
Promoter ID:MM_KWN:55101
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109754,   NM_025648,   OTTMUST00000052996,   OTTMUST00000052997,   OTTMUST00000052998,   XR_031475_GM5911
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,380,721 - 87,381,221 (-)MPROMDB
RGD ID:6848285
Promoter ID:MM_ACW:48243
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:FARSA.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,384,874 - 87,385,374 (+)MPROMDB
RGD ID:6843134
Promoter ID:MM_KWN:55102
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver
Transcripts:OTTMUST00000052999
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,391,066 - 87,391,912 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913840 AgrOrtholog
Ensembl Genes ENSMUSG00000003808 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000003906 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000105376 UniProtKB/TrEMBL
  ENSMUSP00000120609 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000003906 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000109754 UniProtKB/TrEMBL
  ENSMUST00000156970 ENTREZGENE, UniProtKB/TrEMBL
InterPro aa-tRNA-synth_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phe-tRNA-synth_IIc_asu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phenylalanyl-tRNA_Synthase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PheRS_DBD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PheRS_DBD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PheRS_DBD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66590 UniProtKB/Swiss-Prot
MGD MGI:1913840 ENTREZGENE
NCBI Gene 66590 ENTREZGENE
Pfam PheRS_DBD1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PheRS_DBD2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PheRS_DBD3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  tRNA-synt_2d UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Farsa PhenoGen
PROSITE AA_TRNA_LIGASE_II UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs pheS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.292517 ENTREZGENE
UniProt D6RIJ2_MOUSE UniProtKB/TrEMBL
  E9PWY9_MOUSE UniProtKB/TrEMBL
  Q4FJQ2_MOUSE UniProtKB/TrEMBL
  Q8BJG2_MOUSE UniProtKB/TrEMBL
  Q8BXN0_MOUSE UniProtKB/TrEMBL
  Q8C0C7 ENTREZGENE
  Q9CT72_MOUSE UniProtKB/TrEMBL
  SYFA_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3U3Q9 UniProtKB/Swiss-Prot
  Q91WR4 UniProtKB/Swiss-Prot
  Q922S1 UniProtKB/Swiss-Prot