Farsa (phenylalanyl-tRNA synthetase, alpha subunit) - Rat Genome Database

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Gene: Farsa (phenylalanyl-tRNA synthetase, alpha subunit) Mus musculus
Analyze
Symbol: Farsa
Name: phenylalanyl-tRNA synthetase, alpha subunit
RGD ID: 1321147
MGI Page MGI
Description: Predicted to enable magnesium ion binding activity and phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation and protein heterotetramerization. Predicted to be part of phenylalanine-tRNA ligase complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; heart; integumental system; and respiratory system. Orthologous to human FARSA (phenylalanyl-tRNA synthetase subunit alpha).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 0610012A19Rik; F; Farsla; phenylalanine--tRNA ligase alpha chain; phenylalanine--tRNA ligase alpha subunit; phenylalanine-tRNA synthetase-like, alpha subunit; phenylalanyl-tRNA synthetase alpha chain; phenylalanyl-tRNA synthetase alpha subunit; pheRS
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,583,597 - 85,595,886 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,583,618 - 85,595,886 (+)EnsemblGRCm39 Ensembl
GRCm38884,856,969 - 84,869,257 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,856,989 - 84,869,257 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,380,885 - 87,393,156 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,747,129 - 87,757,131 (+)NCBIMGSCv36mm8
Celera889,156,659 - 89,168,787 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FarsaMouseAicardi-Goutieres Syndrome 4  ISORGD:13211468554872ClinVar Annotator: match by term: Aicardi-Goutieres syndrome 4ClinVarPMID:10371528|PMID:10699052|PMID:11854167|PMID:16602100|PMID:19486177|PMID:21454563|PMID:25274781|PMID:25735478|PMID:27250579|PMID:28492532
FarsaMousealpha-mannosidosis  ISORGD:13211468554872ClinVar Annotator: match by term: Deficiency of alpha-mannosidaseClinVarPMID:28492532
FarsaMouseCharcot-Marie-Tooth disease dominant intermediate B  ISORGD:13211468554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease dominant intermediate BClinVarPMID:28492532
FarsaMouseepisodic ataxia type 2  ISORGD:13211468554872ClinVar Annotator: match by term: Episodic ataxia type 2ClinVarPMID:10371528|PMID:10699052|PMID:11854167|PMID:16602100|PMID:19486177|PMID:20097664|PMID:21183743|PMID:21454563|PMID:23831250|PMID:25274781|PMID:25735478|PMID:26814174|PMID:27250579|PMID:28007337|PMID:28492532|PMID:31139143
FarsaMouseglutaric acidemia I  ISORGD:13211468554872ClinVar Annotator: match by term: Glutaric aciduria, type 1ClinVarPMID:10371528|PMID:10699052|PMID:11854167|PMID:16602100|PMID:19486177|PMID:21454563|PMID:25274781|PMID:25735478|PMID:27250579|PMID:28492532
FarsaMouseRajab Interstitial Lung Disease with Brain Calcifications 2  ISORGD:13211468554872ClinVar Annotator: match by term: FARSA-related condition | ClinVar Annotator: match by term: Rajab interstitial more ...ClinVarPMID:25741868|PMID:31355908|PMID:33598926|PMID:35132614|PMID:35918773
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FarsaMouseRajab Interstitial Lung Disease with Brain Calcifications 2  ISORGD:13211467240710 OMIM 

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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FarsaMouse1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
FarsaMouse1,2-dimethylhydrazine multiple interactionsEXP 6480464Folic Acid inhibits the reaction [1,2-Dimethylhydrazine results in increased expression of FARSA mRNA]CTDPMID:22206623
FarsaMouse1,2-dimethylhydrazine increases expressionEXP 64804641,2-Dimethylhydrazine results in increased expression of FARSA mRNACTDPMID:22206623
FarsaMouse1-chloro-2,4-dinitrobenzene affects bindingISORGD:13211466480464Dinitrochlorobenzene binds to FARSA proteinCTDPMID:32991956
FarsaMouse17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of FARSA mRNACTDPMID:17942748
FarsaMouse17alpha-ethynylestradiol multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of FARSA mRNACTDPMID:17942748
FarsaMouse17beta-estradiol affects expressionISORGD:13211466480464Estradiol affects the expression of FARSA mRNACTDPMID:22574217
FarsaMouse17beta-estradiol increases expressionISORGD:13211466480464Estradiol results in increased expression of FARSA mRNACTDPMID:19167446|PMID:31614463
FarsaMouse2,2',4,4',5,5'-hexachlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
FarsaMouse2,2',4,4'-Tetrabromodiphenyl ether affects expressionEXP 64804642,2',4,4'-tetrabromodiphenyl ether affects the expression of FARSA mRNACTDPMID:30294300
FarsaMouse2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISORGD:132114664804642,2',4,4'-tetrabromodiphenyl ether results in decreased expression of FARSA proteinCTDPMID:31675489
FarsaMouse2,2',5,5'-tetrachlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
FarsaMouse2,3,7,8-tetrachlorodibenzodioxine multiple interactionsEXP 6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of FARSA mRNACTDPMID:17942748
FarsaMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of FARSA mRNACTDPMID:21570461
FarsaMouse2,4,4'-trichlorobiphenyl multiple interactionsEXP 6480464[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...CTDPMID:25510870
FarsaMouse2,4,6-tribromophenol decreases expressionISORGD:132114664804642,4,6-tribromophenol results in decreased expression of FARSA mRNACTDPMID:31675489
FarsaMouse2,6-dimethoxyphenol multiple interactionsISORGD:13211466480464[Furaldehyde co-treated with pyrogallol 1,3-dimethyl ether] results in decreased expression of FARSA protein; [pyrogallol 1,3-dimethyl more ...CTDPMID:38598786
FarsaMouse2,6-dinitrotoluene affects expressionISORGD:131031464804642,6-dinitrotoluene affects the expression of FARSA mRNACTDPMID:21346803
FarsaMouse2-amino-14,16-dimethyloctadecan-3-ol decreases expressionISORGD:132114664804642-amino-14,16-dimethyloctadecan-3-ol results in decreased expression of FARSA proteinCTDPMID:32044396
FarsaMouse3,3',5,5'-tetrabromobisphenol A decreases expressionISORGD:13211466480464tetrabromobisphenol A results in decreased expression of FARSA proteinCTDPMID:31675489

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Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FarsaMousephenylalanyl-tRNA aminoacylation involved_inIBAPANTHER:PTN000165932|FB:FBgn0030007|UniProtKB:C6KSN5|UniProtKB:Q9Y285|UniProtKB:O95363|FB:FBgn0275436|SGD:S000006251|UniProtKB:P08312|SGD:S0000018722290270 GO_CentralGO_REF:0000033
FarsaMousephenylalanyl-tRNA aminoacylation involved_inISOUniProtKB:Q9Y2852290270 GO_CentralGO_REF:0000119
FarsaMousephenylalanyl-tRNA aminoacylation involved_inISSUniProtKB:Q9Y2852290270 UniProtGO_REF:0000024
FarsaMouseprotein heterotetramerization involved_inISOUniProtKB:Q9Y2852290270 GO_CentralGO_REF:0000119
FarsaMouseprotein heterotetramerization involved_inISSUniProtKB:Q9Y2852290270 UniProtGO_REF:0000024

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FarsaMousecytoplasm located_inISSUniProtKB:Q505J82290270 UniProtGO_REF:0000024
FarsaMousecytoplasm located_inISORGD:13103142290270 GO_CentralGO_REF:0000096
FarsaMousecytoplasm is_active_inIBAPANTHER:PTN000165932|TAIR:locus:2085455|UniProtKB:C6KSN5|UniProtKB:Q9Y285|UniProtKB:Q8I5A1|RGD:1310314|RGD:1309416|SGD:S000001872|SGD:S000006251|UniProtKB:P083122290270 GO_CentralGO_REF:0000033
FarsaMousephenylalanine-tRNA ligase complex part_ofISOUniProtKB:Q9Y2852290270 GO_CentralGO_REF:0000119
FarsaMousephenylalanine-tRNA ligase complex part_ofIBAPANTHER:PTN000165935|SGD:S000001872|UniProtKB:Q9Y2852290270 GO_CentralGO_REF:0000033
FarsaMousephenylalanine-tRNA ligase complex part_ofISSUniProtKB:Q9Y2852290270 UniProtGO_REF:0000024

Molecular Function
1 to 11 of 11 rows

  
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
FarsaMouseATP binding enablesIEAUniProtKB-KW:KW-00672290270 UniProtGO_REF:0000043
FarsaMousemagnesium ion binding enablesISSUniProtKB:A5K9S02290270 UniProtGO_REF:0000024
FarsaMousephenylalanine-tRNA ligase activity enablesIBAPANTHER:PTN000165932|FB:FBgn0275436|SGD:S000006251|FB:FBgn0030007|UniProtKB:C6KSN5|UniProtKB:Q9Y285|UniProtKB:O953632290270 GO_CentralGO_REF:0000033
FarsaMousephenylalanine-tRNA ligase activity enablesISSUniProtKB:Q9Y2852290270 UniProtGO_REF:0000024
FarsaMousephenylalanine-tRNA ligase activity enablesISOUniProtKB:Q9Y2852290270 GO_CentralGO_REF:0000119
FarsaMouseprotein binding enablesISOUniProtKB:Q9BQ959068941 PMID:21163940IntActPMID:21163940
FarsaMouseprotein binding enablesISOUniProtKB:P19712-PRO_00000380509068941 PMID:24965446AgBasePMID:24965446
FarsaMouseprotein binding enablesISOUniProtKB:Q9BUL8|UniProtKB:Q9H9E3|UniProtKB:Q9NSD99068941 PMID:32296183IntActPMID:32296183
FarsaMouseprotein binding enablesISOUniProtKB:Q9P2A49068941 PMID:25416956IntActPMID:25416956
FarsaMouseprotein binding enablesISOUniProtKB:Q9NSD99068941 PMID:20223217, PMID:28514442, PMID:33961781IntActPMID:20223217|PMID:28514442|PMID:33961781
FarsaMousetRNA binding enablesIEAInterPro:IPR0023192290270 InterProGO_REF:0000002
1 to 11 of 11 rows

Imported Annotations - SMPDB

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
FarsaMousephenylketonuria pathway  ISORGD:132114610402751 SMPDBSMP:00206
FarsaMousetyrosinemia type II pathway  ISORGD:132114610402751 SMPDBSMP:00369
FarsaMousetyrosinemia type III pathway  ISORGD:132114610402751 SMPDBSMP:00370

#
Reference Title
Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15747579   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24457600   PMID:25044020   PMID:28378742   PMID:28671696   PMID:30196744  
PMID:30457570   PMID:30973865   PMID:32325033   PMID:36114006   PMID:37142655   PMID:38355793  



Farsa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,583,597 - 85,595,886 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,583,618 - 85,595,886 (+)EnsemblGRCm39 Ensembl
GRCm38884,856,969 - 84,869,257 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,856,989 - 84,869,257 (+)EnsemblGRCm38mm10GRCm38
MGSCv37887,380,885 - 87,393,156 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36887,747,129 - 87,757,131 (+)NCBIMGSCv36mm8
Celera889,156,659 - 89,168,787 (+)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.23NCBI
FARSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381912,922,479 - 12,933,711 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1912,922,479 - 12,934,037 (-)EnsemblGRCh38hg38GRCh38
GRCh371913,033,293 - 13,044,525 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361912,894,284 - 12,905,558 (-)NCBINCBI36Build 36hg18NCBI36
Build 341912,894,292 - 12,905,522NCBI
Celera1912,923,020 - 12,934,291 (-)NCBICelera
Cytogenetic Map19p13.13NCBI
HuRef1912,605,186 - 12,616,461 (-)NCBIHuRef
CHM1_11913,033,781 - 13,045,058 (-)NCBICHM1_1
T2T-CHM13v2.01913,046,966 - 13,058,199 (-)NCBIT2T-CHM13v2.0
Farsa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81940,196,255 - 40,205,830 (-)NCBIGRCr8
mRatBN7.21923,291,409 - 23,300,985 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1923,268,869 - 23,300,980 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1930,114,305 - 30,123,855 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01930,768,669 - 30,778,219 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01932,991,355 - 33,000,904 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,969,255 - 25,978,777 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,969,255 - 25,978,776 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,944,878 - 36,954,400 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,947,663 - 24,957,186 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11924,952,488 - 24,962,012 (-)NCBI
Celera1922,848,305 - 22,857,809 (-)NCBICelera
Cytogenetic Map19q11NCBI
Farsa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541531,968,980 - 31,981,424 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541531,972,888 - 31,981,424 (-)NCBIChiLan1.0ChiLan1.0
FARSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22017,851,642 - 17,863,414 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11916,852,290 - 16,864,068 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01912,484,607 - 12,496,160 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11913,227,193 - 13,238,085 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1913,227,193 - 13,238,244 (-)Ensemblpanpan1.1panPan2
FARSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,258,827 - 49,267,279 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,258,845 - 49,267,198 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,131,070 - 49,139,532 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02049,775,682 - 49,784,201 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2049,775,704 - 49,819,242 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,986,876 - 48,995,337 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02049,413,365 - 49,421,812 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02049,655,888 - 49,664,348 (+)NCBIUU_Cfam_GSD_1.0
Farsa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,364,421 - 208,372,363 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,981,723 - 1,990,322 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,982,343 - 1,990,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FARSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl266,105,429 - 66,118,191 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1266,105,393 - 66,114,867 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2266,271,545 - 66,280,456 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FARSA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1611,602,352 - 11,613,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl611,600,516 - 11,613,345 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660748,173,868 - 8,185,230 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Farsa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624901492,817 - 505,911 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624901492,673 - 505,815 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Farsa
1092 total Variants

Predicted Target Of
Summary Value
Count of predictions:1405
Count of miRNA genes:575
Interacting mature miRNAs:693
Transcripts:ENSMUST00000003906, ENSMUST00000109754, ENSMUST00000129595, ENSMUST00000141480, ENSMUST00000144404, ENSMUST00000156970
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 35 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse

1 to 10 of 35 rows
UniSTS:235950  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,869,127 - 84,869,243UniSTSGRCm38
MGSCv37887,393,026 - 87,393,142UniSTSGRCm37
Celera889,168,657 - 89,168,773UniSTS
Cytogenetic Map8C3UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS






1 to 30 of 35 rows
RefSeq Transcripts NM_025648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004934868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC155163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB853717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 35 rows

Ensembl Acc Id: ENSMUST00000003906   ⟹   ENSMUSP00000003906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,583,618 - 85,595,886 (+)Ensembl
GRCm38.p6 Ensembl884,856,989 - 84,869,257 (+)Ensembl
Ensembl Acc Id: ENSMUST00000109754   ⟹   ENSMUSP00000105376
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,583,646 - 85,595,886 (+)Ensembl
GRCm38.p6 Ensembl884,857,017 - 84,869,257 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129595
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,583,624 - 85,595,885 (+)Ensembl
GRCm38.p6 Ensembl884,856,995 - 84,869,256 (+)Ensembl
Ensembl Acc Id: ENSMUST00000141480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,594,192 - 85,595,639 (+)Ensembl
GRCm38.p6 Ensembl884,867,563 - 84,869,010 (+)Ensembl
Ensembl Acc Id: ENSMUST00000144404
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,583,638 - 85,593,655 (+)Ensembl
GRCm38.p6 Ensembl884,857,009 - 84,867,026 (+)Ensembl
Ensembl Acc Id: ENSMUST00000156970   ⟹   ENSMUSP00000120609
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,583,649 - 85,595,885 (+)Ensembl
GRCm38.p6 Ensembl884,857,020 - 84,869,256 (+)Ensembl
RefSeq Acc Id: NM_025648   ⟹   NP_079924
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,615 - 85,595,886 (+)NCBI
GRCm38884,856,986 - 84,869,257 (+)NCBI
MGSCv37887,380,885 - 87,393,156 (+)RGD
Celera889,156,659 - 89,168,787 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152751
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,615 - 85,595,886 (+)NCBI
GRCm38884,856,986 - 84,869,257 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934867
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,598 - 85,595,886 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004934868
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,597 - 85,595,524 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387772
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,583,599 - 85,595,886 (+)NCBI
GRCm38884,856,969 - 84,869,257 (+)NCBI
Sequence:
RefSeq Acc Id: NP_079924   ⟸   NM_025648
- UniProtKB: Q91WR4 (UniProtKB/Swiss-Prot),   Q3U3Q9 (UniProtKB/Swiss-Prot),   Q922S1 (UniProtKB/Swiss-Prot),   Q8C0C7 (UniProtKB/Swiss-Prot),   E9PWY9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000003906   ⟸   ENSMUST00000003906
Ensembl Acc Id: ENSMUSP00000105376   ⟸   ENSMUST00000109754
Ensembl Acc Id: ENSMUSP00000120609   ⟸   ENSMUST00000156970
Aminoacyl-transfer RNA synthetases class-II family   Phenylalanyl-tRNA synthetase   PheRS DNA binding

Name Modeler Protein Id AA Range Protein Structure
AF-Q8C0C7-F1-model_v2 AlphaFold Q8C0C7 1-508 view protein structure

RGD ID:8667699
Promoter ID:EPDNEW_M11881
Type:initiation region
Name:Farsa_1
Description:Mus musculus phenylalanyl-tRNA synthetase, alpha subunit , transcriptvariant 2, non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,857,009 - 84,857,069EPDNEW
RGD ID:6843225
Promoter ID:MM_KWN:55101
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109754,   NM_025648,   OTTMUST00000052996,   OTTMUST00000052997,   OTTMUST00000052998,   XR_031475_GM5911
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,380,721 - 87,381,221 (-)MPROMDB
RGD ID:6848285
Promoter ID:MM_ACW:48243
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney
Transcripts:FARSA.LSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,384,874 - 87,385,374 (+)MPROMDB
RGD ID:6843134
Promoter ID:MM_KWN:55102
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver
Transcripts:OTTMUST00000052999
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,391,066 - 87,391,912 (+)MPROMDB


1 to 40 of 44 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000003808 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000003906 ENTREZGENE
  ENSMUST00000003906.13 UniProtKB/Swiss-Prot
  ENSMUST00000129595 ENTREZGENE
  ENSMUST00000156970 ENTREZGENE
Gene3D-CATH 1.10.10.2320 UniProtKB/Swiss-Prot
  1.10.10.2330 UniProtKB/Swiss-Prot
  3.30.1370.240 UniProtKB/Swiss-Prot
  Bira Bifunctional Protein, Domain 2 UniProtKB/Swiss-Prot
InterPro aa-tRNA-synth_II UniProtKB/Swiss-Prot
  aa-tRNA-synth_II/BPL/LPL UniProtKB/Swiss-Prot
  Phe-tRNA-synth_IIc_asu UniProtKB/Swiss-Prot
  Phenylalanyl-tRNA_Synthase UniProtKB/Swiss-Prot
  PheRS_DBD1 UniProtKB/Swiss-Prot
  PheRS_DBD2 UniProtKB/Swiss-Prot
  PheRS_DBD3 UniProtKB/Swiss-Prot
  WH_DNA-bd_sf UniProtKB/Swiss-Prot
KEGG Report mmu:66590 UniProtKB/Swiss-Prot
MGD MGI:1913840 ENTREZGENE
NCBI Gene 66590 ENTREZGENE
PANTHER PHENYLALANINE--TRNA LIGASE ALPHA SUBUNIT UniProtKB/Swiss-Prot
  PHENYLALANYL-TRNA SYNTHETASE UniProtKB/Swiss-Prot
Pfam PheRS_DBD1 UniProtKB/Swiss-Prot
  PheRS_DBD2 UniProtKB/Swiss-Prot
  PheRS_DBD3 UniProtKB/Swiss-Prot
  tRNA-synt_2d UniProtKB/Swiss-Prot
PhenoGen Farsa PhenoGen
PROSITE AA_TRNA_LIGASE_II UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot
  SSF55681 UniProtKB/Swiss-Prot
UniProt D6RIJ2_MOUSE UniProtKB/TrEMBL
  E9PWY9 ENTREZGENE, UniProtKB/TrEMBL
  Q3U3Q9 ENTREZGENE
  Q4FJQ2_MOUSE UniProtKB/TrEMBL
  Q8BJG2_MOUSE UniProtKB/TrEMBL
  Q8BXN0_MOUSE UniProtKB/TrEMBL
  Q8C0C7 ENTREZGENE
  Q91WR4 ENTREZGENE
  Q922S1 ENTREZGENE
  Q9CT72_MOUSE UniProtKB/TrEMBL
1 to 40 of 44 rows