Ttyh1 (tweety family member 1) - Rat Genome Database

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Gene: Ttyh1 (tweety family member 1) Mus musculus
Analyze
Symbol: Ttyh1
Name: tweety family member 1
RGD ID: 1320817
MGI Page MGI
Description: Enables calcium ion binding activity and volume-sensitive chloride channel activity. Involved in L-glutamate transmembrane transport. Acts upstream of or within several processes, including Notch signaling pathway; filopodium assembly; and stem cell proliferation. Located in filopodium membrane; filopodium tip; and smooth endoplasmic reticulum membrane. Is active in membrane and synapse. Is expressed in several structures, including alimentary system; genitourinary system; nervous system; sensory organ; and skeleton. Orthologous to human TTYH1 (tweety family member 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 4930459B04Rik; 6330408P11Rik; mTTY1; protein tweety homolog 1; tty; TTY1; tweety homolog 1; volume-regulated anion channel subunit Ttyh1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,122,418 - 4,139,206 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,122,407 - 4,139,707 (+)EnsemblGRCm39 Ensembl
GRCm3874,119,530 - 4,135,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,119,408 - 4,136,708 (+)EnsemblGRCm38mm10GRCm38
MGSCv3774,071,135 - 4,087,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,722,673 - 3,738,432 (+)NCBIMGSCv36mm8
Celera73,870,407 - 3,887,024 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10950931   PMID:11042159   PMID:11076861   PMID:11597145   PMID:12477932   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15010458   PMID:15226823  
PMID:15890332   PMID:16079153   PMID:16141072   PMID:16141073   PMID:16635246   PMID:17116230   PMID:17953485   PMID:18725516   PMID:20568244   PMID:20634317   PMID:21267068   PMID:21873635  
PMID:24952961   PMID:28489004   PMID:28607172   PMID:29513653   PMID:30177553   PMID:31073041   PMID:31079925   PMID:31138989   PMID:33355899   PMID:34321999   PMID:34869383   PMID:35377797  
PMID:36808153   PMID:37524711   PMID:38187761  


Genomics

Comparative Map Data
Ttyh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,122,418 - 4,139,206 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,122,407 - 4,139,707 (+)EnsemblGRCm39 Ensembl
GRCm3874,119,530 - 4,135,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,119,408 - 4,136,708 (+)EnsemblGRCm38mm10GRCm38
MGSCv3774,071,135 - 4,087,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,722,673 - 3,738,432 (+)NCBIMGSCv36mm8
Celera73,870,407 - 3,887,024 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.38NCBI
TTYH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,415,464 - 54,436,904 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,415,219 - 54,436,904 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,926,638 - 54,948,084 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,618,447 - 59,639,882 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,618,446 - 59,639,864NCBI
Celera1951,967,223 - 51,988,650 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,250,866 - 51,272,151 (+)NCBIHuRef
CHM1_11954,920,450 - 54,941,738 (+)NCBICHM1_1
T2T-CHM13v2.01957,508,741 - 57,530,183 (+)NCBIT2T-CHM13v2.0
Ttyh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,125,564 - 79,144,137 (-)NCBIGRCr8
mRatBN7.2170,053,312 - 70,071,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl170,053,324 - 70,071,845 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx175,442,390 - 75,460,306 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,006,707 - 84,024,624 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0177,150,293 - 77,168,201 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0173,734,614 - 73,753,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl173,734,624 - 73,753,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0174,794,980 - 74,813,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,465,633 - 69,483,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1169,543,734 - 69,561,692 (-)NCBI
Celera167,049,933 - 67,067,842 (+)NCBICelera
Cytogenetic Map1q21NCBI
Ttyh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555671,523,534 - 1,538,963 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555671,523,534 - 1,538,963 (+)NCBIChiLan1.0ChiLan1.0
TTYH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,436,654 - 60,458,234 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,360,886 - 62,382,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,362,145 - 51,383,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11960,202,191 - 60,223,137 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1960,202,250 - 60,222,789 (+)Ensemblpanpan1.1panPan2
TTYH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,860,633 - 102,876,065 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,860,672 - 102,876,016 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,922,464 - 102,937,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,506,323 - 103,521,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,506,330 - 103,521,793 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,148,361 - 103,163,807 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,904,054 - 102,919,493 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,618,042 - 103,633,486 (-)NCBIUU_Cfam_GSD_1.0
Ttyh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,398,747 - 2,412,477 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886149,265 - 159,976 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936886148,687 - 160,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTYH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl658,871,665 - 58,891,519 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1658,870,792 - 58,891,600 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,423,576 - 53,443,343 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTYH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,122,189 - 47,144,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl647,122,156 - 47,144,673 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607327,289,032 - 27,362,866 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttyh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,291,286 - 2,305,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,291,561 - 2,305,961 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:7059
Count of miRNA genes:939
Interacting mature miRNAs:1346
Transcripts:ENSMUST00000032594, ENSMUST00000079415, ENSMUST00000119661, ENSMUST00000126971, ENSMUST00000128317, ENSMUST00000129423, ENSMUST00000130150, ENSMUST00000132400, ENSMUST00000134536, ENSMUST00000139789, ENSMUST00000140637, ENSMUST00000148760, ENSMUST00000148951, ENSMUST00000151959, ENSMUST00000153673
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse

Markers in Region
RH128306  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3874,133,997 - 4,134,207UniSTSGRCm38
MGSCv3774,085,599 - 4,085,809UniSTSGRCm37
Celera73,884,780 - 3,884,990UniSTS
Cytogenetic Map7A1UniSTS
Ttyh1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A1UniSTS
cM Map7 UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001305822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_021324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB162929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC110496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF190699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF190991 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK015486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK018148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042758 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW047255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW124230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB336176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC065694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO430313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ104403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000032594   ⟹   ENSMUSP00000032594
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,753 - 4,138,329 (+)Ensembl
GRCm38.p6 Ensembl74,119,754 - 4,135,330 (+)Ensembl
Ensembl Acc Id: ENSMUST00000079415   ⟹   ENSMUSP00000078384
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,584 - 4,138,332 (+)Ensembl
GRCm38.p6 Ensembl74,119,585 - 4,135,333 (+)Ensembl
Ensembl Acc Id: ENSMUST00000119661   ⟹   ENSMUSP00000113937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,529 - 4,138,346 (+)Ensembl
GRCm38.p6 Ensembl74,119,530 - 4,135,347 (+)Ensembl
Ensembl Acc Id: ENSMUST00000126971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,529 - 4,137,948 (+)Ensembl
GRCm38.p6 Ensembl74,119,530 - 4,134,949 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128317
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,133,618 - 4,134,889 (+)Ensembl
GRCm38.p6 Ensembl74,130,619 - 4,131,890 (+)Ensembl
Ensembl Acc Id: ENSMUST00000129423   ⟹   ENSMUSP00000120182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,532 - 4,139,707 (+)Ensembl
GRCm38.p6 Ensembl74,119,533 - 4,136,708 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,407 - 4,128,587 (+)Ensembl
GRCm38.p6 Ensembl74,119,408 - 4,125,588 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,131,225 - 4,133,118 (+)Ensembl
GRCm38.p6 Ensembl74,128,226 - 4,130,119 (+)Ensembl
Ensembl Acc Id: ENSMUST00000134536
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,125,148 - 4,138,406 (+)Ensembl
GRCm38.p6 Ensembl74,122,149 - 4,135,407 (+)Ensembl
Ensembl Acc Id: ENSMUST00000139789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,134,136 - 4,135,033 (+)Ensembl
GRCm38.p6 Ensembl74,131,137 - 4,132,034 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140637
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,136,029 - 4,136,971 (+)Ensembl
GRCm38.p6 Ensembl74,133,030 - 4,133,972 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148760
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,555 - 4,128,618 (+)Ensembl
GRCm38.p6 Ensembl74,119,556 - 4,125,619 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,132,245 - 4,136,196 (+)Ensembl
GRCm38.p6 Ensembl74,129,246 - 4,133,197 (+)Ensembl
Ensembl Acc Id: ENSMUST00000151959
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,123,219 - 4,128,559 (+)Ensembl
GRCm38.p6 Ensembl74,120,220 - 4,125,560 (+)Ensembl
Ensembl Acc Id: ENSMUST00000153673   ⟹   ENSMUSP00000115623
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,621 - 4,131,264 (+)Ensembl
GRCm38.p6 Ensembl74,119,622 - 4,128,265 (+)Ensembl
Ensembl Acc Id: ENSMUST00000205971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,128,666 - 4,136,418 (+)Ensembl
GRCm38.p6 Ensembl74,125,667 - 4,133,419 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206869   ⟹   ENSMUSP00000146131
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,127,488 - 4,137,238 (+)Ensembl
GRCm38.p6 Ensembl74,124,489 - 4,134,239 (+)Ensembl
Ensembl Acc Id: ENSMUST00000206987   ⟹   ENSMUSP00000146170
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl74,122,587 - 4,128,627 (+)Ensembl
GRCm38.p6 Ensembl74,119,588 - 4,125,628 (+)Ensembl
RefSeq Acc Id: NM_001001454   ⟹   NP_001001454
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,529 - 4,138,406 (+)NCBI
GRCm3874,119,530 - 4,135,407 (+)NCBI
MGSCv3774,071,135 - 4,087,843 (+)RGD
Celera73,870,407 - 3,887,024 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001109765   ⟹   NP_001103235
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,529 - 4,138,406 (+)NCBI
GRCm3874,119,530 - 4,135,407 (+)NCBI
MGSCv3774,071,135 - 4,087,843 (+)RGD
Celera73,870,407 - 3,887,024 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001305822   ⟹   NP_001292751
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,529 - 4,138,406 (+)NCBI
GRCm3874,119,530 - 4,135,407 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021324   ⟹   NP_067299
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,529 - 4,138,406 (+)NCBI
GRCm3874,119,530 - 4,135,407 (+)NCBI
MGSCv3774,071,135 - 4,087,843 (+)RGD
Celera73,870,407 - 3,887,024 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036153299   ⟹   XP_036009192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,418 - 4,139,206 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153300   ⟹   XP_036009193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,551 - 4,138,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153301   ⟹   XP_036009194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,530 - 4,138,353 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153302   ⟹   XP_036009195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,553 - 4,139,206 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153303   ⟹   XP_036009196
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3974,122,551 - 4,139,206 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001001454 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103235 (Get FASTA)   NCBI Sequence Viewer  
  NP_001292751 (Get FASTA)   NCBI Sequence Viewer  
  NP_067299 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009192 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009193 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009194 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009195 (Get FASTA)   NCBI Sequence Viewer  
  XP_036009196 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG02615 (Get FASTA)   NCBI Sequence Viewer  
  AAG15842 (Get FASTA)   NCBI Sequence Viewer  
  AAH46310 (Get FASTA)   NCBI Sequence Viewer  
  AAH65694 (Get FASTA)   NCBI Sequence Viewer  
  AAZ06803 (Get FASTA)   NCBI Sequence Viewer  
  BAB29865 (Get FASTA)   NCBI Sequence Viewer  
  BAB31094 (Get FASTA)   NCBI Sequence Viewer  
  BAC31730 (Get FASTA)   NCBI Sequence Viewer  
  BAC33329 (Get FASTA)   NCBI Sequence Viewer  
  BAC33980 (Get FASTA)   NCBI Sequence Viewer  
  BAD20188 (Get FASTA)   NCBI Sequence Viewer  
  EDL31213 (Get FASTA)   NCBI Sequence Viewer  
  EDL31214 (Get FASTA)   NCBI Sequence Viewer  
  EDL31215 (Get FASTA)   NCBI Sequence Viewer  
  EDL31216 (Get FASTA)   NCBI Sequence Viewer  
  EDL31217 (Get FASTA)   NCBI Sequence Viewer  
  EDL31218 (Get FASTA)   NCBI Sequence Viewer  
  EDL31219 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000032594.7
  ENSMUSP00000078384
  ENSMUSP00000078384.6
  ENSMUSP00000113937
  ENSMUSP00000113937.2
  ENSMUSP00000115623.2
  ENSMUSP00000120182
  ENSMUSP00000120182.2
  ENSMUSP00000146131
  ENSMUSP00000146131.2
  ENSMUSP00000146170.2
GenBank Protein Q9D3A9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_067299   ⟸   NM_021324
- Peptide Label: isoform 2
- UniProtKB: Q9EQN7 (UniProtKB/Swiss-Prot),   Q9D5D1 (UniProtKB/Swiss-Prot),   Q8C7M4 (UniProtKB/Swiss-Prot),   Q8BRL4 (UniProtKB/Swiss-Prot),   Q6P0A7 (UniProtKB/Swiss-Prot),   Q6L751 (UniProtKB/Swiss-Prot),   Q9ESC3 (UniProtKB/Swiss-Prot),   Q9D3A9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001001454   ⟸   NM_001001454
- Peptide Label: isoform 1
- UniProtKB: Q9D3A9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001103235   ⟸   NM_001109765
- Peptide Label: isoform 2
- UniProtKB: Q9EQN7 (UniProtKB/Swiss-Prot),   Q9D5D1 (UniProtKB/Swiss-Prot),   Q8C7M4 (UniProtKB/Swiss-Prot),   Q8BRL4 (UniProtKB/Swiss-Prot),   Q6P0A7 (UniProtKB/Swiss-Prot),   Q6L751 (UniProtKB/Swiss-Prot),   Q9ESC3 (UniProtKB/Swiss-Prot),   Q9D3A9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001292751   ⟸   NM_001305822
- Peptide Label: isoform 3
- UniProtKB: A0A0U1RPU8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000113937   ⟸   ENSMUST00000119661
Ensembl Acc Id: ENSMUSP00000032594   ⟸   ENSMUST00000032594
Ensembl Acc Id: ENSMUSP00000078384   ⟸   ENSMUST00000079415
Ensembl Acc Id: ENSMUSP00000146170   ⟸   ENSMUST00000206987
Ensembl Acc Id: ENSMUSP00000146131   ⟸   ENSMUST00000206869
Ensembl Acc Id: ENSMUSP00000120182   ⟸   ENSMUST00000129423
Ensembl Acc Id: ENSMUSP00000115623   ⟸   ENSMUST00000153673
RefSeq Acc Id: XP_036009192   ⟸   XM_036153299
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036009194   ⟸   XM_036153301
- Peptide Label: isoform X3
- UniProtKB: A0A0U1RPU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009196   ⟸   XM_036153303
- Peptide Label: isoform X3
- UniProtKB: A0A0U1RPU8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036009193   ⟸   XM_036153300
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036009195   ⟸   XM_036153302
- Peptide Label: isoform X3
- UniProtKB: A0A0U1RPU8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D3A9-F1-model_v2 AlphaFold Q9D3A9 1-450 view protein structure

Promoters
RGD ID:6842272
Promoter ID:MM_KWN:48420
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000108591
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3674,075,811 - 4,076,311 (+)MPROMDB
RGD ID:6842280
Promoter ID:MM_KWN:48421
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000076013
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3674,079,011 - 4,079,612 (+)MPROMDB
RGD ID:6842275
Promoter ID:MM_KWN:48422
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000076009
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3674,080,211 - 4,080,711 (+)MPROMDB
RGD ID:6842273
Promoter ID:MM_KWN:48423
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000076010
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3674,081,111 - 4,081,611 (+)MPROMDB
RGD ID:6842274
Promoter ID:MM_KWN:48424
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000076011
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3674,082,361 - 4,082,861 (+)MPROMDB
RGD ID:6842276
Promoter ID:MM_KWN:48425
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000076012
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3674,084,211 - 4,084,711 (+)MPROMDB
RGD ID:6891650
Promoter ID:EPDNEW_M9276
Type:initiation region
Name:Ttyh1_1
Description:Mus musculus tweety family member 1 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3874,119,579 - 4,119,639EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1889007 AgrOrtholog
Ensembl Genes ENSMUSG00000030428 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032594.13 UniProtKB/TrEMBL
  ENSMUST00000079415 ENTREZGENE
  ENSMUST00000079415.12 UniProtKB/Swiss-Prot
  ENSMUST00000119661 ENTREZGENE
  ENSMUST00000119661.8 UniProtKB/Swiss-Prot
  ENSMUST00000129423 ENTREZGENE
  ENSMUST00000129423.8 UniProtKB/Swiss-Prot
  ENSMUST00000153673.8 UniProtKB/TrEMBL
  ENSMUST00000206869 ENTREZGENE
  ENSMUST00000206869.2 UniProtKB/TrEMBL
  ENSMUST00000206987.2 UniProtKB/TrEMBL
InterPro Tweety UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:57776 UniProtKB/Swiss-Prot
MGD MGI:1889007 ENTREZGENE
NCBI Gene 57776 ENTREZGENE
PANTHER PROTEIN TWEETY HOMOLOG 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12424 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Tweety UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ttyh1 PhenoGen
UniProt A0A0U1RPU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RPY1_MOUSE UniProtKB/TrEMBL
  D6RG66_MOUSE UniProtKB/TrEMBL
  G8JL37_MOUSE UniProtKB/TrEMBL
  Q6L751 ENTREZGENE
  Q6P0A7 ENTREZGENE
  Q8BRL4 ENTREZGENE
  Q8C7M4 ENTREZGENE
  Q9D3A9 ENTREZGENE
  Q9D5D1 ENTREZGENE
  Q9EQN7 ENTREZGENE
  Q9ESC3 ENTREZGENE
  TTYH1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q6L751 UniProtKB/Swiss-Prot
  Q6P0A7 UniProtKB/Swiss-Prot
  Q8BRL4 UniProtKB/Swiss-Prot
  Q8C7M4 UniProtKB/Swiss-Prot
  Q9D5D1 UniProtKB/Swiss-Prot
  Q9EQN7 UniProtKB/Swiss-Prot
  Q9ESC3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-14 Ttyh1  tweety family member 1    tweety homolog 1 (Drosophila)  Symbol and/or name change 5135510 APPROVED