Ttyh1 (tweety family member 1) - Rat Genome Database

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Gene: Ttyh1 (tweety family member 1) Heterocephalus glaber
Analyze
Symbol: Ttyh1
Name: tweety family member 1
RGD ID: 18911086
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); chloride channel activity (ortholog); volume-sensitive anion channel activity (ortholog); INVOLVED IN cell morphogenesis (ortholog); cell-cell adhesion (ortholog); cell-substrate adhesion (ortholog); FOUND IN filopodium membrane (ortholog); filopodium tip (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein tweety homolog 1; tweety homolog 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,291,286 - 2,305,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,291,561 - 2,305,961 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ttyh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248322,291,286 - 2,305,927 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248322,291,561 - 2,305,961 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TTYH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381954,415,464 - 54,436,904 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1954,415,219 - 54,436,904 (+)EnsemblGRCh38hg38GRCh38
GRCh371954,926,638 - 54,948,084 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361959,618,447 - 59,639,882 (+)NCBINCBI36Build 36hg18NCBI36
Build 341959,618,446 - 59,639,864NCBI
Celera1951,967,223 - 51,988,650 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1951,250,866 - 51,272,151 (+)NCBIHuRef
CHM1_11954,920,450 - 54,941,738 (+)NCBICHM1_1
T2T-CHM13v2.01957,508,741 - 57,530,183 (+)NCBIT2T-CHM13v2.0
Ttyh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,122,418 - 4,139,206 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,122,407 - 4,139,707 (+)EnsemblGRCm39 Ensembl
GRCm3874,119,530 - 4,135,407 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,119,408 - 4,136,708 (+)EnsemblGRCm38mm10GRCm38
MGSCv3774,071,135 - 4,087,843 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3673,722,673 - 3,738,432 (+)NCBIMGSCv36mm8
Celera73,870,407 - 3,887,024 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.38NCBI
Ttyh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,125,564 - 79,144,137 (-)NCBIGRCr8
mRatBN7.2170,053,312 - 70,071,872 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl170,053,324 - 70,071,845 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx175,442,390 - 75,460,306 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0184,006,707 - 84,024,624 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0177,150,293 - 77,168,201 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0173,734,614 - 73,753,157 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl173,734,624 - 73,753,128 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0174,794,980 - 74,813,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,465,633 - 69,483,549 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1169,543,734 - 69,561,692 (-)NCBI
Celera167,049,933 - 67,067,842 (+)NCBICelera
Cytogenetic Map1q21NCBI
Ttyh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555671,523,534 - 1,538,963 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555671,523,534 - 1,538,963 (+)NCBIChiLan1.0ChiLan1.0
TTYH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22060,436,654 - 60,458,234 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11962,360,886 - 62,382,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01951,362,145 - 51,383,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11960,202,191 - 60,223,137 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1960,202,250 - 60,222,789 (+)Ensemblpanpan1.1panPan2
TTYH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,860,633 - 102,876,065 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,860,672 - 102,876,016 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1102,922,464 - 102,937,910 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01103,506,323 - 103,521,810 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1103,506,330 - 103,521,793 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11103,148,361 - 103,163,807 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,904,054 - 102,919,493 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01103,618,042 - 103,633,486 (-)NCBIUU_Cfam_GSD_1.0
Ttyh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093492,398,747 - 2,412,477 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886149,265 - 159,976 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936886148,687 - 160,478 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTYH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl658,871,665 - 58,891,519 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1658,870,792 - 58,891,600 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2653,423,576 - 53,443,343 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTYH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1647,122,189 - 47,144,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl647,122,156 - 47,144,673 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607327,289,032 - 27,362,866 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000017238   ⟹   ENSHGLP00000017067
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248322,291,286 - 2,305,927 (-)Ensembl
RefSeq Acc Id: XM_004866706   ⟹   XP_004866763
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,291,561 - 2,305,951 (-)NCBI
RefSeq Acc Id: XM_004866707   ⟹   XP_004866764
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,291,561 - 2,305,950 (-)NCBI
RefSeq Acc Id: XM_013066220   ⟹   XP_012921674
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,292,653 - 2,305,960 (-)NCBI
RefSeq Acc Id: XM_021246132   ⟹   XP_021101791
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,292,653 - 2,305,961 (-)NCBI
RefSeq Acc Id: XM_021246133   ⟹   XP_021101792
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,291,561 - 2,305,955 (-)NCBI
RefSeq Acc Id: XM_021246134   ⟹   XP_021101793
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,291,561 - 2,305,953 (-)NCBI
RefSeq Acc Id: XM_021246135   ⟹   XP_021101794
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,295,412 - 2,305,961 (-)NCBI
RefSeq Acc Id: XM_021246136   ⟹   XP_021101795
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,291,561 - 2,305,954 (-)NCBI
RefSeq Acc Id: XM_021246137   ⟹   XP_021101796
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,292,653 - 2,305,630 (-)NCBI
RefSeq Acc Id: XM_021246138   ⟹   XP_021101797
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,295,235 - 2,305,961 (-)NCBI
RefSeq Acc Id: XM_021246139   ⟹   XP_021101798
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,295,235 - 2,305,961 (-)NCBI
RefSeq Acc Id: XR_002389913
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248322,291,561 - 2,305,953 (-)NCBI
RefSeq Acc Id: XP_021101792   ⟸   XM_021246133
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021101795   ⟸   XM_021246136
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021101793   ⟸   XM_021246134
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004866763   ⟸   XM_004866706
- Peptide Label: isoform X6
- UniProtKB: G5CBG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004866764   ⟸   XM_004866707
- Peptide Label: isoform X8
- UniProtKB: G5CBG6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021101791   ⟸   XM_021246132
- Peptide Label: isoform X1
RefSeq Acc Id: XP_012921674   ⟸   XM_013066220
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021101796   ⟸   XM_021246137
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021101798   ⟸   XM_021246139
- Peptide Label: isoform X11
RefSeq Acc Id: XP_021101797   ⟸   XM_021246138
- Peptide Label: isoform X10
RefSeq Acc Id: XP_021101794   ⟸   XM_021246135
- Peptide Label: isoform X5
Ensembl Acc Id: ENSHGLP00000017067   ⟸   ENSHGLT00000017238


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012220 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000017238 ENTREZGENE
InterPro Tweety UniProtKB/TrEMBL
NCBI Gene Ttyh1 ENTREZGENE
PANTHER PROTEIN TWEETY HOMOLOG 1 UniProtKB/TrEMBL
  TWEETY-RELATED UniProtKB/TrEMBL
Pfam Tweety UniProtKB/TrEMBL
UniProt G5CBG6 ENTREZGENE, UniProtKB/TrEMBL