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Gene: CIPC (CLOCK interacting pacemaker) Homo sapiens

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Symbol:

CIPC

Name:

CLOCK interacting pacemaker

RGD ID:

1319859

HGNC Page

HGNC:20365

Description:

Predicted to be involved in negative regulation of DNA-templated transcription and negative regulation of circadian rhythm. Located in cytosol; nucleolus; and nucleoplasm.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CLOCK-interacting circadian protein; CLOCK-interacting pacemaker; CLOCK-interacting protein, circadian; hypothetical protein LOC85457; KIAA1737; uncharacterized protein KIAA1737

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Cipc (CLOCK interacting protein, circadian)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Cipc (CLOCK-interacting pacemaker)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Cipc (CLOCK interacting pacemaker)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	CIPC (CLOCK interacting pacemaker)	NCBI	Ortholog
Canis lupus familiaris (dog):	CIPC (CLOCK interacting pacemaker)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cipc (CLOCK interacting pacemaker)	NCBI	Ortholog
Sus scrofa (pig):	CIPC (CLOCK interacting pacemaker)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	CIPC (CLOCK interacting pacemaker)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Cipc (CLOCK interacting pacemaker)	NCBI	Ortholog
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Cipc (CLOCK-interacting pacemaker)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cipc (CLOCK interacting protein, circadian)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cipca (CLOCK-interacting pacemaker a)	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|ZFIN)
Danio rerio (zebrafish):	cipcb (CLOCK-interacting pacemaker b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Xenopus laevis (African clawed frog):	cipc.S	Alliance	DIOPT (Xenbase)
Xenopus tropicalis (tropical clawed frog):	cipc	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus laevis (African clawed frog):	cipc.L	Alliance	DIOPT (Xenbase)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	77,098,258 - 77,117,287 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	77,098,126 - 77,117,287 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	77,564,601 - 77,583,630 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	76,634,331 - 76,653,383 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	76,634,330 - 76,653,382	NCBI
Celera	14	57,603,166 - 57,622,223 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	57,732,271 - 57,751,328 (+)	NCBI		HuRef
CHM1_1	14	77,502,995 - 77,522,047 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	71,308,042 - 71,327,053 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIPC	Human	intellectual disability		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability and mild	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIPC	Human	1,2-dimethylhydrazine	multiple interactions	ISO	Cipc (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CIPC mRNA	CTD	PMID:22206623
CIPC	Human	17beta-estradiol	decreases expression	ISO	Cipc (Mus musculus)	6480464	Estradiol results in decreased expression of CIPC mRNA	CTD	PMID:39298647
CIPC	Human	4,4'-sulfonyldiphenol	decreases expression	ISO	Cipc (Mus musculus)	6480464	bisphenol S results in decreased expression of CIPC mRNA	CTD	PMID:39298647
CIPC	Human	arsane	affects methylation	EXP		6480464	Arsenic affects the methylation of CIPC gene	CTD	PMID:25304211
CIPC	Human	arsenic atom	affects methylation	EXP		6480464	Arsenic affects the methylation of CIPC gene	CTD	PMID:25304211
CIPC	Human	benzo[a]pyrene	increases expression	EXP		6480464	Benzo(a)pyrene results in increased expression of CIPC mRNA	CTD	PMID:26238291
CIPC	Human	bis(2-ethylhexyl) phthalate	increases expression	ISO	Cipc (Mus musculus)	6480464	Diethylhexyl Phthalate results in increased expression of CIPC mRNA	CTD	PMID:34319233
CIPC	Human	bisphenol A	affects expression	ISO	Cipc (Rattus norvegicus)	6480464	bisphenol A affects the expression of CIPC mRNA	CTD	PMID:25181051
CIPC	Human	bisphenol A	decreases expression	ISO	Cipc (Mus musculus)	6480464	bisphenol A results in decreased expression of CIPC mRNA	CTD	PMID:32156529
CIPC	Human	bisphenol A	increases expression	ISO	Cipc (Rattus norvegicus)	6480464	bisphenol A results in increased expression of CIPC mRNA	CTD	PMID:34947998
CIPC	Human	bisphenol A	increases methylation	ISO	Cipc (Rattus norvegicus)	6480464	bisphenol A results in increased methylation of CIPC gene	CTD	PMID:28505145
CIPC	Human	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of CIPC mRNA	CTD	PMID:38568856
CIPC	Human	carbamazepine	affects expression	EXP		6480464	Carbamazepine affects the expression of CIPC mRNA	CTD	PMID:25979313
CIPC	Human	chlorpyrifos	increases expression	ISO	Cipc (Mus musculus)	6480464	Chlorpyrifos results in increased expression of CIPC mRNA	CTD	PMID:37019170
CIPC	Human	cisplatin	increases expression	EXP		6480464	Cisplatin results in increased expression of CIPC mRNA	CTD	PMID:27392435
CIPC	Human	copper(II) sulfate	decreases expression	EXP		6480464	Copper Sulfate results in decreased expression of CIPC mRNA	CTD	PMID:19549813
CIPC	Human	cyclosporin A	increases expression	EXP		6480464	Cyclosporine results in increased expression of CIPC mRNA	CTD	PMID:25562108
CIPC	Human	doxorubicin	decreases expression	EXP		6480464	Doxorubicin results in decreased expression of CIPC mRNA	CTD	PMID:29803840
CIPC	Human	ethanol	affects expression	ISO	Cipc (Mus musculus)	6480464	Ethanol affects the expression of CIPC mRNA	CTD	PMID:30319688
CIPC	Human	folic acid	multiple interactions	ISO	Cipc (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CIPC mRNA	CTD	PMID:22206623
CIPC	Human	furan	increases methylation	ISO	Cipc (Rattus norvegicus)	6480464	furan results in increased methylation of CIPC gene	CTD	PMID:22079235
CIPC	Human	hydrogen peroxide	increases expression	EXP		6480464	Hydrogen Peroxide results in increased expression of CIPC mRNA	CTD	PMID:18951874
CIPC	Human	paracetamol	decreases expression	ISO	Cipc (Rattus norvegicus)	6480464	Acetaminophen results in decreased expression of CIPC mRNA	CTD	PMID:33387578
CIPC	Human	quercetin	decreases expression	EXP		6480464	Quercetin results in decreased expression of CIPC mRNA	CTD	PMID:21632981
CIPC	Human	resveratrol	multiple interactions	EXP		6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of CIPC mRNA	CTD	PMID:23557933
CIPC	Human	sodium arsenite	increases methylation	ISO	Cipc (Mus musculus)	6480464	sodium arsenite results in increased methylation of CIPC gene	CTD	PMID:32068019
CIPC	Human	sodium arsenite	decreases expression	ISO	Cipc (Mus musculus)	6480464	sodium arsenite results in decreased expression of CIPC mRNA	CTD	PMID:37682722
CIPC	Human	sodium arsenite	decreases expression	EXP		6480464	sodium arsenite results in decreased expression of CIPC mRNA	CTD	PMID:38568856
CIPC	Human	tetrachloromethane	increases expression	ISO	Cipc (Rattus norvegicus)	6480464	Carbon Tetrachloride results in increased expression of CIPC mRNA	CTD	PMID:31150632
CIPC	Human	thiram	decreases expression	EXP		6480464	Thiram results in decreased expression of CIPC mRNA	CTD	PMID:38568856
CIPC	Human	triptonide	affects expression	ISO	Cipc (Mus musculus)	6480464	triptonide affects the expression of CIPC mRNA	CTD	PMID:33045310
CIPC	Human	troglitazone	decreases expression	ISO	Cipc (Mus musculus)	6480464	troglitazone results in decreased expression of CIPC mRNA	CTD	PMID:28973697
CIPC	Human	urethane	decreases expression	EXP		6480464	Urethane results in decreased expression of CIPC mRNA	CTD	PMID:28818685
CIPC	Human	valproic acid	affects expression	EXP		6480464	Valproic Acid affects the expression of CIPC mRNA	CTD	PMID:25979313
CIPC	Human	vinclozolin	decreases expression	ISO	Cipc (Rattus norvegicus)	6480464	vinclozolin results in decreased expression of CIPC mRNA	CTD	PMID:23034163

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIPC	Human	negative regulation of circadian rhythm	involved_in	IEA	InterPro:IPR031602	150520179		InterPro	GO_REF:0000002
CIPC	Human	negative regulation of circadian rhythm	involved_in	IEA	UniProtKB:Q8R0W1 and ensembl:ENSMUSP00000141049	150520179		Ensembl	GO_REF:0000107
CIPC	Human	negative regulation of circadian rhythm	involved_in	ISS	UniProtKB:Q8R0W1	150520179		UniProt	GO_REF:0000024
CIPC	Human	negative regulation of DNA-templated transcription	involved_in	ISS	UniProtKB:Q8R0W1	150520179		UniProt	GO_REF:0000024
CIPC	Human	negative regulation of DNA-templated transcription	involved_in	IBA	MGI:1919185 and PANTHER:PTN002438734	150520179		GO_Central	GO_REF:0000033
CIPC	Human	negative regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR031602	150520179		InterPro	GO_REF:0000002
CIPC	Human	negative regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q8R0W1 and ensembl:ENSMUSP00000141049	150520179		Ensembl	GO_REF:0000107
CIPC	Human	rhythmic process	involved_in	IEA	UniProtKB-KW:KW-0090	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIPC	Human	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	150520179		UniProt	GO_REF:0000043
CIPC	Human	cytosol	located_in	IDA		150520179		HPA	GO_REF:0000052
CIPC	Human	cytosol	located_in	IEA	UniProtKB-SubCell:SL-0091	150520179		UniProt	GO_REF:0000044
CIPC	Human	nucleolus	located_in	IDA		150520179		HPA	GO_REF:0000052
CIPC	Human	nucleoplasm	located_in	IDA		150520179		HPA	GO_REF:0000052
CIPC	Human	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
CIPC	Human	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
CIPC	Human	nucleus	located_in	IEA	UniProtKB:Q8R0W1 and ensembl:ENSMUSP00000141049	150520179		Ensembl	GO_REF:0000107
CIPC	Human	nucleus	located_in	ISS	UniProtKB:Q8R0W1	150520179		UniProt	GO_REF:0000024
CIPC	Human	nucleus	is_active_in	IBA	MGI:1919185 more ...	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIPC	Human	protein binding	enables	IPI	UniProtKB:O43639	150520179	PMID:32296183	IntAct	PMID:32296183
CIPC	Human	protein binding	enables	IPI	UniProtKB:Q9UJ41	150520179	PMID:25416956	IntAct	PMID:25416956

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
CIPC	Human	Intellectual disability, mild		IAGP	(Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability and mild	ClinVar

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:11214970	PMID:12477932	PMID:14702039	PMID:15489334	PMID:17207965	PMID:17310242	PMID:18029348	PMID:19322201	PMID:19414601	PMID:21145461	PMID:21873635	PMID:22658674
PMID:23414517	PMID:23555304	PMID:25416956	PMID:26186194	PMID:26657846	PMID:28514442	PMID:32296183	PMID:32393512	PMID:33961781	PMID:35914814

CIPC
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	77,098,258 - 77,117,287 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	77,098,126 - 77,117,287 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	77,564,601 - 77,583,630 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	76,634,331 - 76,653,383 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	76,634,330 - 76,653,382	NCBI
Celera	14	57,603,166 - 57,622,223 (+)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	57,732,271 - 57,751,328 (+)	NCBI		HuRef
CHM1_1	14	77,502,995 - 77,522,047 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	71,308,042 - 71,327,053 (+)	NCBI		T2T-CHM13v2.0

Cipc
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	86,993,817 - 87,012,138 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	86,993,817 - 87,012,136 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	86,944,741 - 86,965,364 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	86,947,043 - 86,965,362 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	88,287,993 - 88,306,314 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	87,836,514 - 87,852,908 (+)	NCBI		MGSCv36	mm8
Celera	12	88,410,550 - 88,429,016 (+)	NCBI		Celera
Cytogenetic Map	12	D2	NCBI
cM Map	12	41.13	NCBI

Cipc
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	112,325,980 - 112,344,692 (+)	NCBI		GRCr8
mRatBN7.2	6	106,595,011 - 106,613,732 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	106,595,105 - 106,613,723 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	106,762,302 - 106,780,982 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	107,061,165 - 107,079,845 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	106,430,805 - 106,449,485 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	110,968,014 - 110,990,912 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	110,968,061 - 110,990,912 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	120,260,096 - 120,281,691 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	111,075,234 - 111,098,343 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	111,079,282 - 111,099,306 (+)	NCBI
Celera	6	104,417,359 - 104,435,465 (+)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

Cipc
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955438	1,016,086 - 1,036,372 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955438	1,016,721 - 1,036,379 (+)	NCBI	ChiLan1.0	ChiLan1.0

CIPC
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	78,179,707 - 78,201,740 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	77,396,221 - 77,418,244 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	57,652,018 - 57,671,107 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	76,854,392 - 76,873,509 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	76,854,661 - 76,873,509 (+)	Ensembl	panpan1.1		panPan2

CIPC
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	49,926,494 - 49,947,006 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	49,926,978 - 49,945,326 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	49,614,515 - 49,635,023 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	50,160,377 - 50,180,724 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	50,160,774 - 50,180,704 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	49,823,175 - 49,843,510 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	49,846,309 - 49,866,794 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	50,244,557 - 50,264,886 (+)	NCBI		UU_Cfam_GSD_1.0

Cipc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	26,114,722 - 26,193,993 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	5,938,170 - 5,953,812 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	5,938,328 - 5,954,246 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIPC
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	100,180,970 - 100,197,837 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	100,180,389 - 100,199,529 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	106,212,583 - 106,229,525 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIPC
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	54,341,807 - 54,360,949 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	54,349,341 - 54,357,937 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	42,543,210 - 42,562,437 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cipc
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	24,766,660 - 24,782,103 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	24,767,952 - 24,787,781 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in CIPC
33 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 14q24.3(chr14:73877072-78042422)x1	copy number loss	See cases [RCV000051548]	Chr14:73877072..78042422 [GRCh38] Chr14:74343775..78508765 [GRCh37] Chr14:73413528..77578518 [NCBI36] Chr14:14q24.3	pathogenic
GRCh38/hg38 14q24.3-31.1(chr14:75489052-79610332)x1	copy number loss	See cases [RCV000051549]	Chr14:75489052..79610332 [GRCh38] Chr14:75955395..80076675 [GRCh37] Chr14:75025148..79146428 [NCBI36] Chr14:14q24.3-31.1	pathogenic
GRCh38/hg38 14q24.2-32.2(chr14:72787506-99596719)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052293]\|See cases [RCV000052293]	Chr14:72787506..99596719 [GRCh38] Chr14:73254214..100063056 [GRCh37] Chr14:72323967..99132809 [NCBI36] Chr14:14q24.2-32.2	pathogenic
GRCh37/hg19 14q24.2-q24.3(chr14:73152115..77698582)	deletion	Intellectual disability, mild [RCV000190520]	Chr14:73152115..77698582 [GRCh37] Chr14:14q24.2-24.3	pathogenic\|likely pathogenic
GRCh38/hg38 14q24.1-31.1(chr14:69562099-81975384)x1	copy number loss	See cases [RCV000134154]	Chr14:69562099..81975384 [GRCh38] Chr14:70028816..82441728 [GRCh37] Chr14:69098569..81511481 [NCBI36] Chr14:14q24.1-31.1	pathogenic
GRCh38/hg38 14q24.3-32.33(chr14:73655772-106879298)x3	copy number gain	See cases [RCV000134000]	Chr14:73655772..106879298 [GRCh38] Chr14:74122475..107287505 [GRCh37] Chr14:73192228..106358550 [NCBI36] Chr14:14q24.3-32.33	pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20151149-106855263)x3	copy number gain	See cases [RCV000135543]	Chr14:20151149..106855263 [GRCh38] Chr14:20619308..107263478 [GRCh37] Chr14:19689148..106334523 [NCBI36] Chr14:14q11.2-32.33	pathogenic
GRCh38/hg38 14q11.2-32.33(chr14:20043514-106877229)x3	copy number gain	See cases [RCV000143373]	Chr14:20043514..106877229 [GRCh38] Chr14:20511673..107285437 [GRCh37] Chr14:19581513..106356482 [NCBI36] Chr14:14q11.2-32.33	pathogenic
GRCh38/hg38 14q24.3-31.1(chr14:73343213-78835059)x1	copy number loss	See cases [RCV000143265]	Chr14:73343213..78835059 [GRCh38] Chr14:73809921..79301402 [GRCh37] Chr14:72879674..78371155 [NCBI36] Chr14:14q24.3-31.1	pathogenic\|likely pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19794561-107234280)x3	copy number gain	See cases [RCV000446256]	Chr14:19794561..107234280 [GRCh37] Chr14:14q11.2-32.33	pathogenic
GRCh37/hg19 14q11.1-32.33(chr14:19000422-107289053)x3	copy number gain	not provided [RCV000738412]	Chr14:19000422..107289053 [GRCh37] Chr14:14q11.1-32.33	pathogenic
GRCh37/hg19 14q23.2-32.33(chr14:62493932-107285437)x3	copy number gain	See cases [RCV000448557]	Chr14:62493932..107285437 [GRCh37] Chr14:14q23.2-32.33	pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:20511673-107285437)	copy number gain	See cases [RCV000512041]	Chr14:20511673..107285437 [GRCh37] Chr14:14q11.2-32.33	pathogenic
GRCh37/hg19 14q24.3(chr14:76082940-78372356)x1	copy number loss	See cases [RCV000511668]	Chr14:76082940..78372356 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.557A>G (p.Lys186Arg)	single nucleotide variant	not specified [RCV004308510]	Chr14:77113675 [GRCh38] Chr14:77580018 [GRCh37] Chr14:14q24.3	uncertain significance
GRCh37/hg19 14q24.2-32.33(chr14:73750741-107285437)x3	copy number gain	See cases [RCV000512497]	Chr14:73750741..107285437 [GRCh37] Chr14:14q24.2-32.33	pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19280733-107287663)x3	copy number gain	not provided [RCV000738413]	Chr14:19280733..107287663 [GRCh37] Chr14:14q11.2-32.33	pathogenic
GRCh37/hg19 14q11.2-32.33(chr14:19327823-107287663)x3	copy number gain	not provided [RCV000738414]	Chr14:19327823..107287663 [GRCh37] Chr14:14q11.2-32.33	pathogenic
GRCh37/hg19 14q24.3-32.11(chr14:77274990-89803137)x1	copy number loss	not provided [RCV000847566]	Chr14:77274990..89803137 [GRCh37] Chr14:14q24.3-32.11	pathogenic
GRCh37/hg19 14q24.3(chr14:77545470-77843384)x1	copy number loss	not provided [RCV000738545]	Chr14:77545470..77843384 [GRCh37] Chr14:14q24.3	benign
NM_033426.3(CIPC):c.941A>G (p.His314Arg)	single nucleotide variant	not specified [RCV004150240]	Chr14:77114059 [GRCh38] Chr14:77580402 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.956A>G (p.Asn319Ser)	single nucleotide variant	not specified [RCV004610747]	Chr14:77114074 [GRCh38] Chr14:77580417 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.745A>G (p.Ser249Gly)	single nucleotide variant	not specified [RCV004610749]	Chr14:77113863 [GRCh38] Chr14:77580206 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.515T>G (p.Leu172Arg)	single nucleotide variant	not specified [RCV004321743]	Chr14:77113633 [GRCh38] Chr14:77579976 [GRCh37] Chr14:14q24.3	uncertain significance
GRCh37/hg19 14q13.3-32.33(chr14:37671058-106985955)x2	copy number gain	See cases [RCV002286356]	Chr14:37671058..106985955 [GRCh37] Chr14:14q13.3-32.33	pathogenic
NM_033426.3(CIPC):c.974A>G (p.His325Arg)	single nucleotide variant	not specified [RCV004156863]	Chr14:77114092 [GRCh38] Chr14:77580435 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.1141C>G (p.Pro381Ala)	single nucleotide variant	not specified [RCV004220187]	Chr14:77114259 [GRCh38] Chr14:77580602 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.302A>G (p.Lys101Arg)	single nucleotide variant	not specified [RCV004212496]	Chr14:77109977 [GRCh38] Chr14:77576320 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.1189C>T (p.Pro397Ser)	single nucleotide variant	not specified [RCV004218157]	Chr14:77114307 [GRCh38] Chr14:77580650 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.181G>A (p.Glu61Lys)	single nucleotide variant	not specified [RCV004233356]	Chr14:77109856 [GRCh38] Chr14:77576199 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.775T>A (p.Phe259Ile)	single nucleotide variant	not specified [RCV004899769]	Chr14:77113893 [GRCh38] Chr14:77580236 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.1183G>A (p.Asp395Asn)	single nucleotide variant	not specified [RCV004079342]	Chr14:77114301 [GRCh38] Chr14:77580644 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.1117G>T (p.Ala373Ser)	single nucleotide variant	not specified [RCV004079341]	Chr14:77114235 [GRCh38] Chr14:77580578 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.1179C>G (p.Phe393Leu)	single nucleotide variant	not specified [RCV004105474]	Chr14:77114297 [GRCh38] Chr14:77580640 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.591G>T (p.Leu197Phe)	single nucleotide variant	not specified [RCV004167168]	Chr14:77113709 [GRCh38] Chr14:77580052 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.1142C>G (p.Pro381Arg)	single nucleotide variant	not specified [RCV004221210]	Chr14:77114260 [GRCh38] Chr14:77580603 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.928C>T (p.Arg310Trp)	single nucleotide variant	not specified [RCV004256627]	Chr14:77114046 [GRCh38] Chr14:77580389 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.515T>C (p.Leu172Pro)	single nucleotide variant	not specified [RCV004342781]	Chr14:77113633 [GRCh38] Chr14:77579976 [GRCh37] Chr14:14q24.3	uncertain significance
GRCh37/hg19 14q23.1-32.33(chr14:58894502-107227240)x3	copy number gain	not provided [RCV003485036]	Chr14:58894502..107227240 [GRCh37] Chr14:14q23.1-32.33	pathogenic
NM_033426.3(CIPC):c.1186C>G (p.His396Asp)	single nucleotide variant	not specified [RCV004443947]	Chr14:77114304 [GRCh38] Chr14:77580647 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.847T>A (p.Ser283Thr)	single nucleotide variant	not specified [RCV004443955]	Chr14:77113965 [GRCh38] Chr14:77580308 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.902G>A (p.Arg301His)	single nucleotide variant	not specified [RCV004443957]	Chr14:77114020 [GRCh38] Chr14:77580363 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.326T>G (p.Leu109Arg)	single nucleotide variant	not specified [RCV004443951]	Chr14:77113444 [GRCh38] Chr14:77579787 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.688G>A (p.Gly230Ser)	single nucleotide variant	not specified [RCV004443953]	Chr14:77113806 [GRCh38] Chr14:77580149 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.964G>C (p.Val322Leu)	single nucleotide variant	not specified [RCV004443958]	Chr14:77114082 [GRCh38] Chr14:77580425 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.124T>A (p.Ser42Thr)	single nucleotide variant	not specified [RCV004443948]	Chr14:77105832 [GRCh38] Chr14:77572175 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.185A>G (p.Asp62Gly)	single nucleotide variant	not specified [RCV004443950]	Chr14:77109860 [GRCh38] Chr14:77576203 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.740C>G (p.Ser247Cys)	single nucleotide variant	not specified [RCV004443954]	Chr14:77113858 [GRCh38] Chr14:77580201 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.874C>G (p.Pro292Ala)	single nucleotide variant	not specified [RCV004443956]	Chr14:77113992 [GRCh38] Chr14:77580335 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.17C>G (p.Pro6Arg)	single nucleotide variant	not specified [RCV004443949]	Chr14:77105725 [GRCh38] Chr14:77572068 [GRCh37] Chr14:14q24.3	uncertain significance
NC_000014.8:g.(?_76173946)_(78082922_?)dup	duplication	not provided [RCV004578223]	Chr14:76173946..78082922 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.744C>A (p.Ser248Arg)	single nucleotide variant	not specified [RCV004610748]	Chr14:77113862 [GRCh38] Chr14:77580205 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.219C>G (p.Asp73Glu)	single nucleotide variant	not specified [RCV004899765]	Chr14:77109894 [GRCh38] Chr14:77576237 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.266T>C (p.Leu89Pro)	single nucleotide variant	not specified [RCV004899766]	Chr14:77109941 [GRCh38] Chr14:77576284 [GRCh37] Chr14:14q24.3	uncertain significance
NM_033426.3(CIPC):c.670G>A (p.Glu224Lys)	single nucleotide variant	not specified [RCV004899767]	Chr14:77113788 [GRCh38] Chr14:77580131 [GRCh37] Chr14:14q24.3	uncertain significance

Predicted Target Of

	Summary Value
Count of predictions:	2725
Count of miRNA genes:	1006
Interacting mature miRNAs:	1222
Transcripts:	ENST00000361786, ENST00000554447, ENST00000554658, ENST00000555200, ENST00000555437, ENST00000555611, ENST00000556863, ENST00000557115
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
596968559	GWAS1088078_H	body mass index QTL GWAS1088078 (human)		2e-09	body mass index		14	77105540	77105541	Human
597017455	GWAS1113529_H	soluble triggering receptor expressed on myeloid cells 2 measurement QTL GWAS1113529 (human)		0.000004	soluble triggering receptor expressed on myeloid cells 2 measurement		14	77117259	77117260	Human
597031688	GWAS1127762_H	sugar consumption measurement QTL GWAS1127762 (human)		0.000004	sugar consumption measurement	sucrose drink intake volume (CMO:0002200)	14	77112024	77112025	Human
597292295	GWAS1388369_H	body mass index QTL GWAS1388369 (human)		2e-09	body mass index	body mass index (BMI) (CMO:0000105)	14	77105540	77105541	Human

WI-15644

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	14	77,583,482 - 77,583,607	UniSTS	GRCh37
Build 36	14	76,653,235 - 76,653,360	RGD	NCBI36
Celera	14	57,622,075 - 57,622,200	RGD
Cytogenetic Map	14	q24.3	UniSTS
HuRef	14	57,751,180 - 57,751,305	UniSTS
GeneMap99-GB4 RH Map	14	206.68	UniSTS
Whitehead-RH Map	14	272.6	UniSTS

A004X08

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	14	77,583,443 - 77,583,628	UniSTS	GRCh37
Build 36	14	76,653,196 - 76,653,381	RGD	NCBI36
Celera	14	57,622,036 - 57,622,221	RGD
Cytogenetic Map	14	q24.3	UniSTS
HuRef	14	57,751,141 - 57,751,326	UniSTS
GeneMap99-GB4 RH Map	14	206.68	UniSTS
Whitehead-RH Map	14	272.6	UniSTS

D1S1425

Human Assembly	Chr	Position (strand)	Source
Cytogenetic Map	19	q13.3	UniSTS
Cytogenetic Map	1	p33	UniSTS
Cytogenetic Map	17	q11.2	UniSTS
Cytogenetic Map	1	p31.3	UniSTS
Cytogenetic Map	22	q13.1	UniSTS
Cytogenetic Map	9	q34.3	UniSTS
Cytogenetic Map	6	q25.3	UniSTS
Cytogenetic Map	19	p13.12	UniSTS
Cytogenetic Map	1	q32.1	UniSTS
Cytogenetic Map	2	p13.1	UniSTS
Cytogenetic Map	5	q35.3	UniSTS
Cytogenetic Map	2	p11.2	UniSTS
Cytogenetic Map	4	q21.23	UniSTS
Cytogenetic Map	22	q12.1	UniSTS
Cytogenetic Map	8	q24.13	UniSTS
Cytogenetic Map	1	p36.33	UniSTS
Cytogenetic Map	11	q13	UniSTS
Cytogenetic Map	1	q23.1	UniSTS
Cytogenetic Map	10	q22	UniSTS
Cytogenetic Map	4	q12	UniSTS
Cytogenetic Map	10	p14	UniSTS
Cytogenetic Map	6	p21.33	UniSTS
Cytogenetic Map	10	q26.3	UniSTS
Cytogenetic Map	7	q22.1	UniSTS
Cytogenetic Map	19	q13.32	UniSTS
Cytogenetic Map	17	q21.31	UniSTS
Cytogenetic Map	7	p22.2	UniSTS
Cytogenetic Map	12	q13.12	UniSTS
Cytogenetic Map	18	p11.21	UniSTS
Cytogenetic Map	14	q32.12	UniSTS
Cytogenetic Map	2	q31.1	UniSTS
Cytogenetic Map	18	p11.31	UniSTS
Cytogenetic Map	13	q34	UniSTS
Cytogenetic Map	4	p14	UniSTS
Cytogenetic Map	8	p23.1	UniSTS
Cytogenetic Map	4	p16.3	UniSTS
Cytogenetic Map	3	q21.3	UniSTS
Cytogenetic Map	19	p13.2	UniSTS
Cytogenetic Map	8	q12.1	UniSTS
Cytogenetic Map	11	q12.3	UniSTS
Cytogenetic Map	16	p11.2	UniSTS
Cytogenetic Map	10	p12	UniSTS
Cytogenetic Map	12	q13	UniSTS
Cytogenetic Map	11	p15.4	UniSTS
Cytogenetic Map	19	p12	UniSTS
Cytogenetic Map	16	p13.3	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	2	p23.3	UniSTS
Cytogenetic Map	5	q13.2	UniSTS
Cytogenetic Map	5	q32	UniSTS
Cytogenetic Map	1	q21.2	UniSTS
Cytogenetic Map	3	q26.2	UniSTS
Cytogenetic Map	6	q25.2-q25.3	UniSTS
Cytogenetic Map	20	q11.2-q13.2	UniSTS
Cytogenetic Map	12	q13.3	UniSTS
Cytogenetic Map	1	q21-q23	UniSTS
Cytogenetic Map	17	q21.32	UniSTS
Cytogenetic Map	1	p35.3	UniSTS
Cytogenetic Map	1	p12	UniSTS
Cytogenetic Map	2	p23-p22	UniSTS
Cytogenetic Map	2	q36.1	UniSTS
Cytogenetic Map	11	q23.3	UniSTS
Cytogenetic Map	2	p16.1	UniSTS
Cytogenetic Map	19	q13.2	UniSTS
Cytogenetic Map	16	q12.1	UniSTS
Cytogenetic Map	17	q22-q23	UniSTS
Cytogenetic Map	2	p11.1	UniSTS
Cytogenetic Map	16	q12.2	UniSTS
Cytogenetic Map	2	p12-p11.2	UniSTS
Cytogenetic Map	3	q11.1	UniSTS
Cytogenetic Map	2	p21	UniSTS
Cytogenetic Map	17	q11.2-q12	UniSTS
Cytogenetic Map	2	q37.1	UniSTS
Cytogenetic Map	1	p32-p31	UniSTS
Cytogenetic Map	1	p21.3	UniSTS
Cytogenetic Map	1	q32.2	UniSTS
Cytogenetic Map	19	q13.1	UniSTS
Cytogenetic Map	7	q21-q22	UniSTS
Cytogenetic Map	1	q25.3	UniSTS
Cytogenetic Map	18	p11.3-p11.2	UniSTS
Cytogenetic Map	2	q33.2	UniSTS
Cytogenetic Map	20	q13.13	UniSTS
Cytogenetic Map	21	p11.1	UniSTS
Cytogenetic Map	12	q24.31-q24.32	UniSTS
Cytogenetic Map	9	q33.2	UniSTS
Cytogenetic Map	11	q13.5	UniSTS
Cytogenetic Map	12	p12.2-p11.2	UniSTS
Cytogenetic Map	21	q22.3	UniSTS
Cytogenetic Map	2	q14.3	UniSTS
Cytogenetic Map	19	p13.3-p13.2	UniSTS
Cytogenetic Map	7	q32.1	UniSTS
Cytogenetic Map	8	p21.3	UniSTS
Cytogenetic Map	17	q22-q23.2	UniSTS
Cytogenetic Map	3	q27.1	UniSTS
Cytogenetic Map	11	q13.1	UniSTS
Cytogenetic Map	4	q21.21	UniSTS
Cytogenetic Map	1	q32	UniSTS
Cytogenetic Map	14	q32	UniSTS
Cytogenetic Map	14	q24.2	UniSTS
Cytogenetic Map	20	q13.33	UniSTS
Cytogenetic Map	3	p21	UniSTS
Cytogenetic Map	10	p11.23	UniSTS
Cytogenetic Map	1	p35.1	UniSTS
Cytogenetic Map	1	q25.2	UniSTS
Cytogenetic Map	18	q12.1	UniSTS
Cytogenetic Map	1	p34.3	UniSTS
Cytogenetic Map	2	q11.2	UniSTS
Cytogenetic Map	15	q23	UniSTS
Cytogenetic Map	8	q24.3	UniSTS
Cytogenetic Map	13	q12.11	UniSTS
Cytogenetic Map	1	p36.31	UniSTS
Cytogenetic Map	3	q21.1	UniSTS
Cytogenetic Map	12	p12	UniSTS
Cytogenetic Map	21	q22.11	UniSTS
Cytogenetic Map	15	q15.3	UniSTS
Cytogenetic Map	X	q12-q13	UniSTS
Cytogenetic Map	22	q11.2	UniSTS
Cytogenetic Map	7	q31.1-q31.3	UniSTS
Cytogenetic Map	X	p22.11	UniSTS
Cytogenetic Map	3	p21.1-p14.2	UniSTS
Cytogenetic Map	2	p24	UniSTS
Cytogenetic Map	20	p12.1	UniSTS
Cytogenetic Map	3	q26.33	UniSTS
Cytogenetic Map	12	q13.11-q14.3	UniSTS
Cytogenetic Map	2	q37.3	UniSTS
Cytogenetic Map	9	q21.33	UniSTS
Cytogenetic Map	12	q12	UniSTS
Cytogenetic Map	X	q13-q21	UniSTS
Cytogenetic Map	8	q24.22	UniSTS
Cytogenetic Map	11	p13	UniSTS
Cytogenetic Map	17	q25.1	UniSTS
Cytogenetic Map	6	q25.2-q27	UniSTS
Cytogenetic Map	12	q24.32	UniSTS
Cytogenetic Map	15	q22.31	UniSTS
Cytogenetic Map	X	q13.1	UniSTS
Cytogenetic Map	22	q12.2	UniSTS
Cytogenetic Map	14	q12	UniSTS
Cytogenetic Map	12	q23-q24.1	UniSTS
Cytogenetic Map	4	q35.1	UniSTS
Cytogenetic Map	17	q24.1	UniSTS
Cytogenetic Map	17	p13.3	UniSTS
Cytogenetic Map	14	q21	UniSTS
Cytogenetic Map	9	p24.3	UniSTS
Cytogenetic Map	7	p13	UniSTS
Cytogenetic Map	2	p14	UniSTS
Cytogenetic Map	21	q22.2	UniSTS
Cytogenetic Map	2	q12.3	UniSTS
Cytogenetic Map	8	p21.1	UniSTS
Cytogenetic Map	17	p13.2	UniSTS
Cytogenetic Map	3	q25.33	UniSTS
Cytogenetic Map	19	q13.12	UniSTS
Cytogenetic Map	5	q31.1	UniSTS
Cytogenetic Map	1	p34	UniSTS
Cytogenetic Map	19	p13.1	UniSTS
Cytogenetic Map	5	q14.1	UniSTS
Cytogenetic Map	X	q22.3	UniSTS
Cytogenetic Map	7	p21.1	UniSTS
Cytogenetic Map	6	p25.2	UniSTS
Cytogenetic Map	10	q23.33	UniSTS
Cytogenetic Map	15	q11-q12	UniSTS
Cytogenetic Map	3	p22.2	UniSTS
Cytogenetic Map	1	p13.3	UniSTS
Cytogenetic Map	15	q21.1-q21.2	UniSTS
Cytogenetic Map	6	p21.3	UniSTS
Cytogenetic Map	7	q34	UniSTS
Cytogenetic Map	4	q13.3	UniSTS
Cytogenetic Map	19	p13.13	UniSTS
Cytogenetic Map	19	q13.41	UniSTS
Cytogenetic Map	17	q24.3	UniSTS
Cytogenetic Map	12	p13.33	UniSTS
Cytogenetic Map	11	q14.1	UniSTS
Cytogenetic Map	3	p22-p21.3	UniSTS
Cytogenetic Map	16	q22.3	UniSTS
Cytogenetic Map	1	p22.1	UniSTS
Cytogenetic Map	6	p12.1	UniSTS
Cytogenetic Map	19	q13.33-q13.41	UniSTS
Cytogenetic Map	2	p25.3	UniSTS
Cytogenetic Map	22	q13.2	UniSTS
Cytogenetic Map	5	p12	UniSTS
Cytogenetic Map	6	q21	UniSTS
Cytogenetic Map	7	q35	UniSTS
Cytogenetic Map	17	p12	UniSTS
Cytogenetic Map	7	q11.1	UniSTS
Cytogenetic Map	2	p25.1-p24.1	UniSTS
Cytogenetic Map	3	q23	UniSTS
Cytogenetic Map	4	q31.21	UniSTS
Cytogenetic Map	5	p13.1	UniSTS
Cytogenetic Map	X	q22.1	UniSTS
Cytogenetic Map	9	q21.11	UniSTS
Cytogenetic Map	5	q13	UniSTS
Cytogenetic Map	1	p22.2	UniSTS
Cytogenetic Map	12	q13.13	UniSTS
Cytogenetic Map	12	q24	UniSTS
Cytogenetic Map	X	q24	UniSTS
Cytogenetic Map	1	q24.2	UniSTS
Cytogenetic Map	22	q13.31	UniSTS
Cytogenetic Map	8	p11.23	UniSTS
Cytogenetic Map	1	q23.3	UniSTS
Cytogenetic Map	16	p12	UniSTS
Cytogenetic Map	10	p15-p14	UniSTS
Cytogenetic Map	19	q13	UniSTS
Cytogenetic Map	1	q22-q23	UniSTS
Cytogenetic Map	20	q11.23	UniSTS
Cytogenetic Map	7	q31	UniSTS
Cytogenetic Map	10	q26	UniSTS
Cytogenetic Map	7	p22.1	UniSTS
Cytogenetic Map	6	p22.3	UniSTS
Cytogenetic Map	6	p21.2	UniSTS
Cytogenetic Map	11	q13.4	UniSTS
Cytogenetic Map	11	q24.2	UniSTS
Cytogenetic Map	X	q28	UniSTS
Cytogenetic Map	1	p33-p32	UniSTS
Cytogenetic Map	5	q35.2	UniSTS
Cytogenetic Map	3	p14.3	UniSTS
Cytogenetic Map	12	q24.33	UniSTS
Cytogenetic Map	3	q26.1-q26.2	UniSTS
Cytogenetic Map	12	p13	UniSTS
Cytogenetic Map	7	q36.1	UniSTS
Cytogenetic Map	8	p11.21	UniSTS
Cytogenetic Map	12	q13.1-q13.2	UniSTS
Cytogenetic Map	1	p36.11	UniSTS
Cytogenetic Map	19	q13.33	UniSTS
Cytogenetic Map	16	p12.3	UniSTS
Cytogenetic Map	13	q14.11	UniSTS
Cytogenetic Map	9	p13.2	UniSTS
Cytogenetic Map	4	q22.1	UniSTS
Cytogenetic Map	3	q13.2	UniSTS
Cytogenetic Map	8	p22	UniSTS
Cytogenetic Map	22	q11.23	UniSTS
Cytogenetic Map	22	q11.21	UniSTS
Cytogenetic Map	1	q42.3	UniSTS
Cytogenetic Map	19	q13.43	UniSTS
Cytogenetic Map	5	q12.3	UniSTS
Cytogenetic Map	20	q11.21	UniSTS
Cytogenetic Map	9	q34.11	UniSTS
Cytogenetic Map	12	q14.3	UniSTS
Cytogenetic Map	6	q15	UniSTS
Cytogenetic Map	6	q22.32	UniSTS
Cytogenetic Map	6	p21.1	UniSTS
Cytogenetic Map	19	q13.31	UniSTS
Cytogenetic Map	16	p13.11	UniSTS
Cytogenetic Map	10	q24.32	UniSTS
Cytogenetic Map	4	p16.1	UniSTS
Cytogenetic Map	18	q11.1	UniSTS
Cytogenetic Map	16	q23.2	UniSTS
Cytogenetic Map	3	q12.1	UniSTS
Cytogenetic Map	15	q24-q25	UniSTS
Cytogenetic Map	7	q31.1	UniSTS
Cytogenetic Map	15	q26.1	UniSTS
Cytogenetic Map	8	q13.1	UniSTS
Cytogenetic Map	6	pter-p12.1	UniSTS
Cytogenetic Map	6	q16	UniSTS
Cytogenetic Map	12	q14.1	UniSTS
Cytogenetic Map	17	q21.2	UniSTS
Cytogenetic Map	9	q22.2	UniSTS
Cytogenetic Map	17	q23.2	UniSTS
Cytogenetic Map	11	q23.1-q23.2	UniSTS
Cytogenetic Map	13	q14	UniSTS
Cytogenetic Map	4	q23	UniSTS
Cytogenetic Map	16	p12.2	UniSTS
Cytogenetic Map	11	q24.3	UniSTS
Cytogenetic Map	7	p14	UniSTS
Cytogenetic Map	15	q24.1	UniSTS
Cytogenetic Map	16	q24.2	UniSTS
Cytogenetic Map	12	q13.11	UniSTS
Cytogenetic Map	9	p13.3	UniSTS
Cytogenetic Map	8	q22.1	UniSTS
Cytogenetic Map	6	q16.2	UniSTS
Cytogenetic Map	5	p15.2	UniSTS
Cytogenetic Map	20	q13.12	UniSTS
Cytogenetic Map	14	q22.3	UniSTS
Cytogenetic Map	2	q13	UniSTS
Cytogenetic Map	3	p21.3	UniSTS
Cytogenetic Map	12	q13.2	UniSTS
Cytogenetic Map	20	p13	UniSTS
Cytogenetic Map	3	q29	UniSTS
Cytogenetic Map	5	q23.3-q31.1	UniSTS
Cytogenetic Map	1	p36	UniSTS
Cytogenetic Map	19	p13.11	UniSTS
Cytogenetic Map	17	q12	UniSTS
Cytogenetic Map	2	q35	UniSTS
Cytogenetic Map	17	p11.2	UniSTS
Cytogenetic Map	1	p34.2	UniSTS
Cytogenetic Map	12	p13.31	UniSTS
Cytogenetic Map	3	q12.3	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	12	q24.31	UniSTS
Cytogenetic Map	17	q25.3	UniSTS
Cytogenetic Map	20	q11	UniSTS
Cytogenetic Map	16	q22.1	UniSTS
Cytogenetic Map	5	q23.3	UniSTS
Cytogenetic Map	15	q15.1	UniSTS
Cytogenetic Map	17	q21	UniSTS
Cytogenetic Map	1	q42	UniSTS
Cytogenetic Map	X	p11.23	UniSTS
Cytogenetic Map	12	q24.13	UniSTS
Cytogenetic Map	3	q27.3	UniSTS
Cytogenetic Map	14	q21.3	UniSTS
Cytogenetic Map	19	p13.3	UniSTS
Cytogenetic Map	2	p15	UniSTS
Cytogenetic Map	17	q22	UniSTS
Cytogenetic Map	20	q13.32	UniSTS
Cytogenetic Map	14	q24.3	UniSTS
Cytogenetic Map	X	q21.1	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2439	2788	2253	4974	1726	2351	6	624	1951	465	2270	7306	6472	53	3734	1	852	1744	1617	175	1


RefSeq Transcripts	NM_033426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB051524	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC007375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC007686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK024737	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK096603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK315124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL834514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC037300	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BI546511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000361786 ⟹ ENSP00000355319

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,098,258 - 77,117,287 (+)	Ensembl

Ensembl Acc Id:

ENST00000554447 ⟹ ENSP00000452380

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,099,113 - 77,113,572 (+)	Ensembl

Ensembl Acc Id:

ENST00000554658 ⟹ ENSP00000451522

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,098,312 - 77,113,522 (+)	Ensembl

Ensembl Acc Id:

ENST00000555200 ⟹ ENSP00000451493

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,099,176 - 77,113,542 (+)	Ensembl

Ensembl Acc Id:

ENST00000555437 ⟹ ENSP00000451997

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,098,126 - 77,113,566 (+)	Ensembl

Ensembl Acc Id:

ENST00000555611 ⟹ ENSP00000450972

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,098,282 - 77,113,545 (+)	Ensembl

Ensembl Acc Id:

ENST00000556863

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,098,258 - 77,106,090 (+)	Ensembl

Ensembl Acc Id:

ENST00000557115 ⟹ ENSP00000452589

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	14	77,098,366 - 77,113,588 (+)	Ensembl

RefSeq Acc Id:

NM_033426 ⟹ NP_219494

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	14	77,098,258 - 77,117,287 (+)	NCBI
GRCh37	14	77,564,578 - 77,583,630 (+)	RGD
Build 36	14	76,634,331 - 76,653,383 (+)	NCBI Archive
Celera	14	57,603,166 - 57,622,223 (+)	RGD
HuRef	14	57,732,271 - 57,751,328 (+)	ENTREZGENE
CHM1_1	14	77,502,995 - 77,522,047 (+)	NCBI
T2T-CHM13v2.0	14	71,308,042 - 71,327,053 (+)	NCBI

Sequence:

show sequence

GAGACACCCAGCGACGACGAGGTTGTCATGGTGCCGCGGGGCCGTGCTCGCGCATGCGCCACCTGACCCACAGGCCGGTCGTGGAGCTGCGACCCCGGCCCTAGGGCAGTCCAGATGAAAAGAGTACC
AATGAATCTGCCTCCAGCTGAATAAACCATGGAGAGGAAAAACCCATCCAGAGAGAGCCCCAGAAGACTCTCTGCCAAAGTAGGCAAAGGCACAGAGATGAAGAAAGTGGCTCGTCAGCTTGGGATGG
CTGCTGCTGAGTCAGACAAGGACTCTGGCTTTTCAGATGGGAGCTCGGAATGTCTGAGCTCTGCAGAGCAGATGGAGTCCGAGGACATGCTGAGCGCCTTAGGCTGGAGCAGAGAAGACAGGCCGAGG
CAGAACTCCAAAACTGCAAAGAATGCCTTCCCTACCCTGTCTCCCATGGTCGTCATGAAGAATGTGCTTGTCAAACAGGGCAGCAGCTCATCCCAGCTCCAGTCGTGGACTGTCCAGCCCTCCTTTGA
AGTGATCTCAGCACAGCCACAGCTCTTATTCCTTCATCCACCTGTACCATCTCCTGTCAGTCCATGTCACACTGGTGAGAAAAAGTCCGACTCCAGGAACTACTTGCCCATTCTGAATTCTTACACCA
AAATAGCCCCACATCCAGGCAAAAGGGGCCTTTCCCTTGGCCCAGAAGAAAAAGGAACAAGTGGAGTGCAGAAGAAAATCTGTACTGAGAGACTTGGGCCTAGCTTGTCTTCCAGTGAGCCAACCAAG
GCTGGTGCTGTCCCATCCAGTCCCTCGACGCCAGCACCACCCAGCGCCAAACTTGCCGAGGACTCAGCTCTGCAGGGTGTGCCCTCTCTGGTGGCAGGTGGAAGTCCACAGACTCTTCAGCCGGTATC
CAGCAGTCACGTGGCTAAAGCTCCCAGTCTGACCTTCGCTTCCCCCGCCAGTCCTGTCTGCGCATCAGACAGCACTCTCCATGGGTTAGAGAGCAACTCTCCCCTTTCACCACTGTCCGCTAATTATA
GCTCACCTTTATGGGCTGCAGAGCACCTCTGCCGCAGCCCAGATATCTTTTCAGAGCAGCGGCAGAGCAAACATAGGCGCTTTCAGAATACCCTAGTAGTCCTACATAAATCTGGTTTGCTGGAGATC
ACTTTGAAAACCAAGGAGTTGATTCGTCAGAATCAGGCAACTCAGGTAGAACTAGACCAGCTAAAGGAGCAAACCCAGCTGTTTATAGAAGCCACCAAGAGCAGGGCCCCTCAGGCTTGGGCCAAGCT
GCAGGCATCTTTAACACCTGGGTCCAGTAATACAGGCAGTGACCTAGAAGCATTCTCTGATCACCCAGCCATATAGCACAGAGGCATATTTTCCTGTTACTTGAGTGGTTCTTTTAGCTCATTTGCTG
TTACCTACTCCTGTTTCCCAAAGCTTATGTAAGAGCTTTTCCTTCTAAACTTAAACTGTGTTGTGGTTCACTTAGGAAGCCACGTGCCAATACCTGGCTGCTGTCTTAACTCGTAGTCTGGGCACAGG
ATACATATGTCCCCGTCCCACTGAGGACCTCAGTTTGGGAGTGCCCTTGAGCCCCTTTTCCTTAGCCTGCAGGTGCTTCAATGGATCATGGGGCAAAGCAGGAGATGATTGTGTGGGGCTCTTCCTGC
TGTCACCTCCCATCATCCCACTCTCTCACCAGGATCAAGGGTACAGTAACACGAATGAGCATACAGAGCAACACCTGTTGAGCCAGGGAGTAGGTGACACAAGGAAACCTTCATGGATCTTCCCTTGC
CTGTCTTAGTCACAGAGAGAAATAAGAGGAGGTTGTTTGCATCCCACAAGGCATCGTACTAGTTGGGCGAGACCTAAAATTCCCTGGGCACAGGTTGCACCTGGGTGTGAGCACTTAATCACTCAACG
CTTTGTTTTCTTACACTTGAAAATCAAGGGAAAGAGTAGTACCATCTGACTCCTACACTTTCATTACAAGTCAGATTTTTCTTAAACTAGCAGGCAAAAACAGTACTTCCAAATTTTAAGGTATGGAA
TGAATGCAGTACATCTGGAATTGTAGTCGATGAATTGCTTTTTTGACTTAGAAGCTGAAGAAAATAGACATAGCCGGCATATCTCATGGTCAGGAGCTGGACGATTCTGGTAACTTAGGCTTTTTTTC
TCTCTTCTTTTGAAACAGTGTAACCTGTTTTATGTCTAAAAATCTTAAGGATAGTTTCAGTGGTTCCTGGGATGTAGTATAAGTTAACTCTGCTGCCATCTTGTTTTTTTTTTTTTTCCTTTATTTTG
ATAAGTGATTATTATGCTTGATAAACTTTGAATTAAATACAGTTGTCTTGAGGGTATGATAAGTCCACAAAAAATTGGAAAGCATCTTACCCATTTTCTTCACATCCCAAATTTTTATTTGTTCCATG
TCATAGTGATGGGAAGCAGTTACAGAGCAGCGTCTTCTGTGTTTCCTTCATGTGTTAGATATTGGCAACAAAGCCAGAGGTGTAATGTTGGTTATATGAAGTTCATCTCAAAATGGAGACCATGACCA
GAGTTTCCAGATGATACACGTTCTTTTCAGCTTCATTAAATAGGCAACTATGTTTCTAAATAGTAAAGTTTCAAAATATTCTCTCAATTTAAAATTTCATCCTCTTGAAAATCTTTGTTCTTTACAAA
ATTATCTTAATAAGTTCTATATGGTCAGCTTCATCTTCCTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCGGAGTACAATGGTGGGATCTCGGCTCACTGCAACCTCCGCCTCCT
GGGTTCAAGTGATTCTCCTGCCACAGCCTCCCAAGTAGCTGGGATTACAGGTGCCTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAAATGGGGTTTTACCGTGTTGGCCAGGCTGGTCTCG
AACTCCTGACCTCAGTTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGCTTACAGGCCTGAGCCACCACGCTCAGCTCAGCTTCACCCTGTCTGCAAAGAAAAGTTTTACCAAGACCAGAAGTTAA
ATATGACATTTCCTAGGTAGTTGTAACTCTAACATAGTTTAAAAAGTATGTGGCTTCAGATTGCCTATACTTTGTTCACAAACGTGTGATTTAGATATGACTGATGTAGAAGTGAACAACTTGGTAAC
ATCCCTAGACTCCACTCATGAACGCAGAATTATTACCTGCTGTTTGCTTTCTGAAAGAATTTCAGAAATCAGAGCAAATGTGTCTTTAGGCAGATTCAGCTCCTTTTAATATTTTTCTCTTGGCCCAC
TCTCTTTGCTTCCCCTGAATCTGTGTGGTACTATAGCAGCTCTACTCTGTGCACCATGCTAGGAAGCTTCCTTTTTGGCAGAATATGTTTGGCAGCAAAGCTATAGAGACAGGTGCATTCAGAACATC
CTGGGCACCAGTCATGAGTCTTACTGTGTCAAAAATCTGAAAACACTTGCTGAGAACCAAATTTATTCCATTGGAAAAACCCTCTGTGGAGCTATAAGCCTCTTGGACTCTTCTTCCTAGATTAAGGC
TTGCATTTCCCTCCCTGTTTCAGTAAAAGATGATGAAAGCCACTATCAATCCTCACTGCTGAGTGGCAGGGAGAAGCAGCACCACTCTCAGCTCTTTTCTAATCTTGTAACTTAGTGCTAGAAGTCTC
TCCAGGCTATTACCATGGGCATTTGTTCTCTGTTGGAGCTGTAAGCAGATGAACCCAAGTAGAGAAGATAGATCTTGGAAGGAGAGATCCATTGAGTCCAGAAGCCAGATCAGCAAATGGAGGAACCT
CGGAGGTGACCAGAAAGATCTCCATCGGTTGCCCAAGGCTGTAAGTAGTGATGGTTTTAGCGATGAATAACGTAATTGGCTATGAAGTACTGTGGCAGAGCTGCTGTTTTCTGAAGGTGAGAAGCCAT
TTTTAGCTCAGAGCAACCCTTAAGAGAACTTTTGGCAGATTTTGTTGGCATTATTGAAATATATATAGAAAAGTTGCTGATTGCAATGGTTATGGGAATGGAATTTAATGACATTTGTAATTTATTAC
ACTCATTGGTTTTTATTGATTATAGTATTGTCTGACTTTTTATTTTCTACTATGGTTCCTTTAGCAGAAAAGTAACTTTTGTGCATATATTGAAGTGGTTTTTCAGCTATGAATTCTTTAGGGTAGAA
ATTTATTTAGCAAATGTGAATTCTTTTGAGAAAGTATGAAGTTTTGCAGAAATTGACTGTGAAATGTCAGAGAAAAATAAAAGTCACTTACTTGAAACCTA

hide sequence


Protein RefSeqs	NP_219494	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH37300	(Get FASTA)	NCBI Sequence Viewer
	BAB21828	(Get FASTA)	NCBI Sequence Viewer
	BAG37578	(Get FASTA)	NCBI Sequence Viewer
	BAG53337	(Get FASTA)	NCBI Sequence Viewer
	CAD39170	(Get FASTA)	NCBI Sequence Viewer
	EAW81269	(Get FASTA)	NCBI Sequence Viewer
	EAW81270	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000355319
	ENSP00000355319.2
GenBank Protein	Q9C0C6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_219494 ⟸ NM_033426

- UniProtKB:

Q8N389 (UniProtKB/Swiss-Prot), B2RCI1 (UniProtKB/Swiss-Prot), Q8NDZ1 (UniProtKB/Swiss-Prot), Q9C0C6 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MERKNPSRESPRRLSAKVGKGTEMKKVARQLGMAAAESDKDSGFSDGSSECLSSAEQMESEDMLSALGWSREDRPRQNSKTAKNAFPTLSPMVVMKNVLVKQGSSSSQLQSWTVQPSFEVISAQPQLL
FLHPPVPSPVSPCHTGEKKSDSRNYLPILNSYTKIAPHPGKRGLSLGPEEKGTSGVQKKICTERLGPSLSSSEPTKAGAVPSSPSTPAPPSAKLAEDSALQGVPSLVAGGSPQTLQPVSSSHVAKAPS
LTFASPASPVCASDSTLHGLESNSPLSPLSANYSSPLWAAEHLCRSPDIFSEQRQSKHRRFQNTLVVLHKSGLLEITLKTKELIRQNQATQVELDQLKEQTQLFIEATKSRAPQAWAKLQASLTPGSS
NTGSDLEAFSDHPAI

hide sequence

Ensembl Acc Id:

ENSP00000450972 ⟸ ENST00000555611

Ensembl Acc Id:

ENSP00000451997 ⟸ ENST00000555437

Ensembl Acc Id:

ENSP00000451493 ⟸ ENST00000555200

Ensembl Acc Id:

ENSP00000452589 ⟸ ENST00000557115

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9C0C6-F1-model_v2	AlphaFold	Q9C0C6	1-399	view protein structure

RGD ID:

6791709

Promoter ID:

HG_KWN:19851

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

NM_033426, UC001XTC.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	14	76,633,901 - 76,634,457 (+)	MPROMDB

RGD ID:

7228227

Promoter ID:

EPDNEW_H19860

Type:

initiation region

Name:

CIPC_1

Description:

CLOCK interacting pacemaker

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H19859 EPDNEW_H19861

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	14	77,098,311 - 77,098,371	EPDNEW

RGD ID:

7228231

Promoter ID:

EPDNEW_H19861

Type:

initiation region

Name:

CIPC_3

Description:

CLOCK interacting pacemaker

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_H19860 EPDNEW_H19859

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	14	77,115,705 - 77,115,765	EPDNEW

Database	Acc Id	Source(s)
COSMIC	CIPC	COSMIC
Ensembl Genes	ENSG00000198894	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000361786	ENTREZGENE
	ENST00000361786.7	UniProtKB/Swiss-Prot
GTEx	ENSG00000198894	GTEx
HGNC ID	HGNC:20365	ENTREZGENE
Human Proteome Map	CIPC	Human Proteome Map
InterPro	CIPC	UniProtKB/Swiss-Prot
KEGG Report	hsa:85457	UniProtKB/Swiss-Prot
NCBI Gene	85457	ENTREZGENE
OMIM	616995	OMIM
PANTHER	CLOCK-INTERACTING PACEMAKER	UniProtKB/Swiss-Prot
	PTHR34648	UniProtKB/Swiss-Prot
Pfam	CiPC	UniProtKB/Swiss-Prot
PharmGKB	PA134877961	PharmGKB
UniProt	B2RCI1	ENTREZGENE
	CIPC_HUMAN	UniProtKB/Swiss-Prot
	G3V310_HUMAN	UniProtKB/TrEMBL
	G3V3Y7_HUMAN	UniProtKB/TrEMBL
	G3V405_HUMAN	UniProtKB/TrEMBL
	G3V4V0_HUMAN	UniProtKB/TrEMBL
	G3V5J4_HUMAN	UniProtKB/TrEMBL
	G3V5Y7_HUMAN	UniProtKB/TrEMBL
	Q8N389	ENTREZGENE
	Q8NDZ1	ENTREZGENE
	Q9C0C6	ENTREZGENE
UniProt Secondary	B2RCI1	UniProtKB/Swiss-Prot
	Q8N389	UniProtKB/Swiss-Prot
	Q8NDZ1	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-19	CIPC	CLOCK interacting pacemaker		CLOCK-interacting pacemaker	Symbol and/or name change	5135510	APPROVED
2014-01-21	CIPC	CLOCK-interacting pacemaker	KIAA1737	KIAA1737	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

Imported Human Phenotype Annotations - ClinVar