Dhx29 (DExH-box helicase 29) - Rat Genome Database

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Gene: Dhx29 (DExH-box helicase 29) Mus musculus
Analyze
Symbol: Dhx29
Name: DExH-box helicase 29 (Ensembl:DEAH (Asp-Glu-Ala-His) box polypeptide 29)
RGD ID: 1318665
MGI Page MGI
Description: Predicted to enable several functions, including nucleic acid binding activity; ribonucleoside triphosphate phosphatase activity; and ribosomal small subunit binding activity. Predicted to be involved in formation of translation preinitiation complex and ribosome assembly. Predicted to act upstream of or within translational initiation. Located in mitochondrion. Is expressed in several structures, including alimentary system; brain; connective tissue; genitourinary system; and hemolymphoid system gland. Orthologous to human DHX29 (DExH-box helicase 29).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3732415M03; ATP-dependent RNA helicase Dhx29; AU043276; Ddxx; DEAH (Asp-Glu-Ala-His) box polypeptide 29; DEAH box protein 29; E130202M19Rik; nucleic acid helicase DDXx
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,063,976 - 113,105,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,063,988 - 113,105,966 (+)EnsemblGRCm39 Ensembl
GRCm3813112,927,680 - 112,969,432 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,927,454 - 112,969,432 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,718,001 - 113,759,395 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,048,671 - 114,090,065 (+)NCBIMGSCv36mm8
Celera13117,244,274 - 117,286,508 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. mRNA helicases: the tacticians of translational control. Parsyan A, etal., Nat Rev Mol Cell Biol. 2011 Apr;12(4):235-45. doi: 10.1038/nrm3083.
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:15489334   PMID:15741177   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18614015   PMID:21677750   PMID:21873635   PMID:24194600   PMID:31040226   PMID:32325033   PMID:34321999   PMID:35012549   PMID:36417873  


Genomics

Comparative Map Data
Dhx29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,063,976 - 113,105,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,063,988 - 113,105,966 (+)EnsemblGRCm39 Ensembl
GRCm3813112,927,680 - 112,969,432 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,927,454 - 112,969,432 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,718,001 - 113,759,395 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,048,671 - 114,090,065 (+)NCBIMGSCv36mm8
Celera13117,244,274 - 117,286,508 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
DHX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,256,055 - 55,307,694 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,256,055 - 55,307,694 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,551,883 - 54,603,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,587,830 - 54,639,278 (-)NCBINCBI36Build 36hg18NCBI36
Build 34554,587,830 - 54,639,259NCBI
Celera551,504,864 - 51,556,336 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,525,083 - 51,576,484 (-)NCBIHuRef
CHM1_1554,555,919 - 54,607,389 (-)NCBICHM1_1
T2T-CHM13v2.0556,083,337 - 56,135,001 (-)NCBIT2T-CHM13v2.0
Dhx29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,293,901 - 46,344,652 (+)NCBIGRCr8
mRatBN7.2244,560,653 - 44,611,450 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,560,714 - 44,611,445 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0244,787,066 - 44,837,834 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,787,002 - 44,837,831 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,827,247 - 63,877,717 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,306,480 - 44,357,742 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera240,339,409 - 40,384,844 (+)NCBICelera
Cytogenetic Map2q14NCBI
Dhx29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,362,325 - 12,412,963 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544612,362,324 - 12,412,814 (+)NCBIChiLan1.0ChiLan1.0
DHX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2458,633,445 - 58,684,515 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1556,787,449 - 56,838,145 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,722,594 - 58,773,708 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1560,345,331 - 60,396,244 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl560,345,282 - 60,396,244 (+)Ensemblpanpan1.1panPan2
DHX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,611,630 - 42,660,328 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,611,632 - 42,660,207 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,657,379 - 39,706,087 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,075,358 - 43,124,087 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,075,358 - 43,124,020 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,153,936 - 40,202,629 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0240,955,696 - 41,004,412 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0241,778,709 - 41,824,714 (-)NCBIUU_Cfam_GSD_1.0
Dhx29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,522,300 - 203,567,559 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,458,843 - 12,504,202 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,458,834 - 12,504,207 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DHX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,425,708 - 34,478,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,426,647 - 34,478,233 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,535,518 - 36,586,889 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DHX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,491,356 - 51,543,889 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,491,598 - 51,543,774 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049360,238 - 412,844 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dhx29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247593,965,685 - 4,013,733 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247593,965,543 - 4,013,600 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dhx29
1641 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:70
Interacting mature miRNAs:72
Transcripts:ENSMUST00000038574
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
10045623Heal18_mwound healing regeneration 18 (mouse)Not determined1379239045113239162Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
4142465Pbwg17_mpostnatal body weight growth 17 (mouse)Not determined1383876060117876256Mouse
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
4140995Fbtq6_mfemoral bone trait QTL 6 (mouse)Not determined1386341617120341758Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse
4141826Tbqt5_mtibia bone quality traits 5 (mouse)Not determined13103341617117043216Mouse
4142334Svtms_msurvival time modifier of Sod2 (mouse)Not determined13107613580119476372Mouse
4141704Hipq1_mhyperinsulin production QTL 1 (mouse)Not determined110409487119476372Mouse

Markers in Region
AU043276  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3813112,969,189 - 112,969,303UniSTSGRCm38
MGSCv3713113,759,397 - 113,759,511UniSTSGRCm37
Celera13117,286,510 - 117,286,624UniSTS
Cytogenetic Map13D2.2UniSTS
Whitehead/MRC_RH13972.43UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004938025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC020331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000038574   ⟹   ENSMUSP00000035244
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13113,063,988 - 113,105,966 (+)Ensembl
GRCm38.p6 Ensembl13112,927,454 - 112,969,432 (+)Ensembl
RefSeq Acc Id: ENSMUST00000223866
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13113,064,182 - 113,068,711 (+)Ensembl
GRCm38.p6 Ensembl13112,927,648 - 112,932,177 (+)Ensembl
RefSeq Acc Id: ENSMUST00000224176   ⟹   ENSMUSP00000153182
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13113,063,988 - 113,078,263 (+)Ensembl
GRCm38.p6 Ensembl13112,927,454 - 112,941,729 (+)Ensembl
RefSeq Acc Id: ENSMUST00000226022
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13113,069,056 - 113,072,238 (+)Ensembl
GRCm38.p6 Ensembl13112,932,522 - 112,935,704 (+)Ensembl
RefSeq Acc Id: NM_172594   ⟹   NP_766182
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913113,064,214 - 113,105,966 (+)NCBI
GRCm3813112,927,680 - 112,969,432 (+)NCBI
MGSCv3713113,718,001 - 113,759,395 (+)RGD
Celera13117,244,274 - 117,286,508 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XR_004938025
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913113,063,976 - 113,105,968 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_766182   ⟸   NM_172594
- UniProtKB: Q8C9B7 (UniProtKB/Swiss-Prot),   Q8BT01 (UniProtKB/Swiss-Prot),   Q8BQJ4 (UniProtKB/Swiss-Prot),   Q8C9H9 (UniProtKB/Swiss-Prot),   Q6PGC1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000153182   ⟸   ENSMUST00000224176
RefSeq Acc Id: ENSMUSP00000035244   ⟸   ENSMUST00000038574
Protein Domains
Helicase ATP-binding   Helicase C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PGC1-F1-model_v2 AlphaFold Q6PGC1 1-1365 view protein structure

Promoters
RGD ID:8681324
Promoter ID:EPDNEW_M18692
Type:initiation region
Name:Dhx29_1
Description:Mus musculus DEAH (Asp-Glu-Ala-His) box polypeptide 29 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813112,927,714 - 112,927,774EPDNEW
RGD ID:6824382
Promoter ID:MM_KWN:15286
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000038574,   NM_028151,   UC007RWU.1,   UC007RWV.1,   UC007RWW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3613113,717,466 - 113,717,992 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2145374 AgrOrtholog
Ensembl Genes ENSMUSG00000042426 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000038574 ENTREZGENE
  ENSMUST00000038574.7 UniProtKB/Swiss-Prot
  ENSMUST00000224176.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1080 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/Swiss-Prot
  DHX29 UniProtKB/Swiss-Prot
  DNA/RNA_helicase_DEAH_CS UniProtKB/Swiss-Prot
  DUF1605 UniProtKB/Swiss-Prot
  HA2_WH UniProtKB/Swiss-Prot
  Helicase-assoc_dom UniProtKB/Swiss-Prot
  Helicase_ATP-bd UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report mmu:218629 UniProtKB/Swiss-Prot
MGD MGI:2145374 ENTREZGENE
NCBI Gene 218629 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE UniProtKB/Swiss-Prot
  ATP-DEPENDENT RNA HELICASE DHX29 UniProtKB/Swiss-Prot
Pfam DEAD UniProtKB/Swiss-Prot
  HA2 UniProtKB/Swiss-Prot
  HA2_C UniProtKB/Swiss-Prot
  Helicase_C UniProtKB/Swiss-Prot
  OB_NTP_bind UniProtKB/Swiss-Prot
PhenoGen Dhx29 PhenoGen
PROSITE DEAH_ATP_HELICASE UniProtKB/Swiss-Prot
  HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot
  HELICASE_CTER UniProtKB/Swiss-Prot
SMART DEXDc UniProtKB/Swiss-Prot
  HA2 UniProtKB/Swiss-Prot
  HELICc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt DHX29_MOUSE UniProtKB/Swiss-Prot
  Q3TRV5_MOUSE UniProtKB/TrEMBL
  Q6PGC1 ENTREZGENE
  Q8BN72_MOUSE UniProtKB/TrEMBL
  Q8BQJ4 ENTREZGENE
  Q8BT01 ENTREZGENE
  Q8C9B7 ENTREZGENE
  Q8C9H9 ENTREZGENE
UniProt Secondary Q8BQJ4 UniProtKB/Swiss-Prot
  Q8BT01 UniProtKB/Swiss-Prot
  Q8C9B7 UniProtKB/Swiss-Prot
  Q8C9H9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-27 Dhx29  DExH-box helicase 29  Dhx29  DEAH (Asp-Glu-Ala-His) box polypeptide 29  Symbol and/or name change 5135510 APPROVED