DMBX1 (diencephalon/mesencephalon homeobox 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: DMBX1 (diencephalon/mesencephalon homeobox 1) Homo sapiens
Analyze
Symbol: DMBX1
Name: diencephalon/mesencephalon homeobox 1
RGD ID: 1317940
HGNC Page HGNC:19026
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in brain development; developmental growth; and regulation of DNA-templated transcription. Predicted to act upstream of or within adult feeding behavior; adult locomotory behavior; and negative regulation of transcription by RNA polymerase II. Predicted to be located in chromatin. Predicted to be part of transcription regulator complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Atx; diencephalon/mesencephalon homeobox protein 1; homeoprotein MBX; MBX; orthodenticle homolog 3; OTX3; paired-like homeobox protein DMBX1; paired-like homeobox protein DMBX1-like; PAXB
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,489,836 - 46,516,216 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,489,836 - 46,516,216 (+)EnsemblGRCh38hg38GRCh38
GRCh37146,955,508 - 46,981,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,745,255 - 46,752,485 (+)NCBINCBI36Build 36hg18NCBI36
Build 34146,684,687 - 46,691,904NCBI
Celera145,260,058 - 45,267,288 (+)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,088,209 - 45,095,438 (+)NCBIHuRef
CHM1_1147,089,685 - 47,096,914 (+)NCBICHM1_1
T2T-CHM13v2.0146,367,063 - 46,393,431 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11744391   PMID:12055180   PMID:12142024   PMID:15890343   PMID:16710414   PMID:17990594   PMID:19274049   PMID:21873635   PMID:23314748   PMID:24816252   PMID:27980695   PMID:28473536  
PMID:30021884   PMID:30928384  


Genomics

Comparative Map Data
DMBX1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38146,489,836 - 46,516,216 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl146,489,836 - 46,516,216 (+)EnsemblGRCh38hg38GRCh38
GRCh37146,955,508 - 46,981,888 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36146,745,255 - 46,752,485 (+)NCBINCBI36Build 36hg18NCBI36
Build 34146,684,687 - 46,691,904NCBI
Celera145,260,058 - 45,267,288 (+)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,088,209 - 45,095,438 (+)NCBIHuRef
CHM1_1147,089,685 - 47,096,914 (+)NCBICHM1_1
T2T-CHM13v2.0146,367,063 - 46,393,431 (+)NCBIT2T-CHM13v2.0
Dmbx1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394115,772,316 - 115,797,794 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4115,772,316 - 115,797,123 (-)EnsemblGRCm39 Ensembl
GRCm384115,915,119 - 115,940,597 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4115,915,119 - 115,939,926 (-)EnsemblGRCm38mm10GRCm38
MGSCv374115,587,724 - 115,612,531 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364115,413,051 - 115,437,858 (-)NCBIMGSCv36mm8
Celera4114,654,783 - 114,679,268 (-)NCBICelera
Cytogenetic Map4D1NCBI
cM Map453.07NCBI
Dmbx1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85134,630,968 - 134,639,781 (-)NCBIGRCr8
mRatBN7.25129,394,221 - 129,403,040 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5129,394,221 - 129,403,040 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5132,011,271 - 132,020,068 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05133,766,141 - 133,774,934 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05133,788,299 - 133,797,094 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05134,767,436 - 134,792,840 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5134,767,436 - 134,776,247 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05138,550,553 - 138,559,364 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45136,177,328 - 136,188,212 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15136,185,495 - 136,192,157 (-)NCBI
Celera5127,925,079 - 127,933,890 (-)NCBICelera
Cytogenetic Map5q35NCBI
Dmbx1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,788,494 - 11,811,890 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546411,788,526 - 11,811,885 (-)NCBIChiLan1.0ChiLan1.0
DMBX1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21180,292,577 - 180,318,939 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11179,434,209 - 179,460,556 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0145,792,574 - 45,818,915 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1147,165,658 - 47,172,872 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl147,165,667 - 47,171,140 (+)Ensemblpanpan1.1panPan2
DMBX1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11513,931,272 - 13,939,650 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1513,934,530 - 13,953,408 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,055,028 - 14,060,291 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,085,095 - 14,090,351 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1514,085,230 - 14,103,868 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11513,886,362 - 13,891,626 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01513,954,914 - 13,960,179 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,024,288 - 14,029,544 (-)NCBIUU_Cfam_GSD_1.0
Dmbx1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505861,679,542 - 61,704,422 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647427,500,669 - 27,529,205 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647427,504,419 - 27,529,196 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMBX1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6164,970,176 - 164,991,968 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16164,967,890 - 164,978,541 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26152,487,419 - 152,494,450 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DMBX1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12086,294,309 - 86,315,688 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2086,295,354 - 86,300,816 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603330,676,140 - 30,700,662 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dmbx1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249062,396,435 - 2,401,379 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249062,396,426 - 2,402,705 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DMBX1
29 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p34.3-33(chr1:39479787-47688131)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051817]|See cases [RCV000051817] Chr1:39479787..47688131 [GRCh38]
Chr1:39945459..48153803 [GRCh37]
Chr1:39718046..47926390 [NCBI36]
Chr1:1p34.3-33		 pathogenic
NM_147192.2(DMBX1):c.197C>T (p.Ser66Phe) single nucleotide variant Malignant melanoma [RCV000064794] Chr1:46510503 [GRCh38]
Chr1:46976175 [GRCh37]
Chr1:46748762 [NCBI36]
Chr1:1p33		 not provided
NM_172225.2(DMBX1):c.352C>T (p.Arg118Trp) single nucleotide variant Global developmental delay [RCV000162107] Chr1:46510953 [GRCh38]
Chr1:46976625 [GRCh37]
Chr1:1p33		 likely pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12		 likely benign
GRCh37/hg19 1p34.1-33(chr1:46747177-47280720)x3 copy number gain See cases [RCV000449344] Chr1:46747177..47280720 [GRCh37]
Chr1:1p34.1-33		 uncertain significance
GRCh37/hg19 1p34.1-32.3(chr1:45303358-52157856)x1 copy number loss See cases [RCV000448358] Chr1:45303358..52157856 [GRCh37]
Chr1:1p34.1-32.3		 likely pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p34.1-33(chr1:46541307-47088882)x3 copy number gain See cases [RCV000511609] Chr1:46541307..47088882 [GRCh37]
Chr1:1p34.1-33		 uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p34.1-33(chr1:46372688-47188150)x3 copy number gain not provided [RCV000736482] Chr1:46372688..47188150 [GRCh37]
Chr1:1p34.1-33		 uncertain significance
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1		 uncertain significance
NM_172225.2(DMBX1):c.580C>T (p.Arg194Cys) single nucleotide variant not specified [RCV004286597] Chr1:46511181 [GRCh38]
Chr1:46976853 [GRCh37]
Chr1:1p33		 uncertain significance
GRCh37/hg19 1p33(chr1:46880370-47015073)x1 copy number loss not provided [RCV001005085] Chr1:46880370..47015073 [GRCh37]
Chr1:1p33		 uncertain significance
GRCh37/hg19 1p34.1-33(chr1:46768408-47174149)x3 copy number gain See cases [RCV001007440] Chr1:46768408..47174149 [GRCh37]
Chr1:1p34.1-33		 uncertain significance
GRCh37/hg19 1p34.1-32.3(chr1:45303358-52157856) copy number loss not specified [RCV002053281] Chr1:45303358..52157856 [GRCh37]
Chr1:1p34.1-32.3		 likely pathogenic
GRCh37/hg19 1p35.1-33(chr1:33285582-47891811) copy number gain not specified [RCV002052781] Chr1:33285582..47891811 [GRCh37]
Chr1:1p35.1-33		 pathogenic
NM_172225.2(DMBX1):c.580C>G (p.Arg194Gly) single nucleotide variant not specified [RCV004135245] Chr1:46511181 [GRCh38]
Chr1:46976853 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.883G>A (p.Ala295Thr) single nucleotide variant not specified [RCV004200137] Chr1:46512243 [GRCh38]
Chr1:46977915 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.155-10A>T single nucleotide variant not specified [RCV004169473] Chr1:46510466 [GRCh38]
Chr1:46976138 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.628A>T (p.Ser210Cys) single nucleotide variant not specified [RCV004216968] Chr1:46511229 [GRCh38]
Chr1:46976901 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.743C>T (p.Ser248Phe) single nucleotide variant not specified [RCV004217936] Chr1:46512103 [GRCh38]
Chr1:46977775 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.871G>A (p.Ala291Thr) single nucleotide variant not specified [RCV004125886] Chr1:46512231 [GRCh38]
Chr1:46977903 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.917C>T (p.Pro306Leu) single nucleotide variant not specified [RCV004122399] Chr1:46512277 [GRCh38]
Chr1:46977949 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.1106C>T (p.Ser369Phe) single nucleotide variant not specified [RCV004107254] Chr1:46512466 [GRCh38]
Chr1:46978138 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.815C>A (p.Thr272Asn) single nucleotide variant not specified [RCV004205474] Chr1:46512175 [GRCh38]
Chr1:46977847 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.79G>T (p.Ala27Ser) single nucleotide variant not specified [RCV004082915] Chr1:46507089 [GRCh38]
Chr1:46972761 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.1084C>T (p.Arg362Trp) single nucleotide variant not specified [RCV004100132] Chr1:46512444 [GRCh38]
Chr1:46978116 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.853G>T (p.Gly285Cys) single nucleotide variant not specified [RCV004123491] Chr1:46512213 [GRCh38]
Chr1:46977885 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.575C>T (p.Pro192Leu) single nucleotide variant not specified [RCV004258756] Chr1:46511176 [GRCh38]
Chr1:46976848 [GRCh37]
Chr1:1p33		 likely benign
NM_172225.2(DMBX1):c.851G>A (p.Gly284Glu) single nucleotide variant not specified [RCV004314229] Chr1:46512211 [GRCh38]
Chr1:46977883 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.488C>T (p.Pro163Leu) single nucleotide variant not specified [RCV004338413] Chr1:46511089 [GRCh38]
Chr1:46976761 [GRCh37]
Chr1:1p33		 uncertain significance
Single allele inversion Bilateral polymicrogyria [RCV003459046] Chr1:33246132..61045156 [GRCh38]
Chr1:1p35.1-31.3		 likely pathogenic
NM_172225.2(DMBX1):c.234C>T (p.Leu78=) single nucleotide variant not provided [RCV003406475] Chr1:46510555 [GRCh38]
Chr1:46976227 [GRCh37]
Chr1:1p33		 likely benign
NM_172225.2(DMBX1):c.598G>C (p.Ala200Pro) single nucleotide variant DMBX1-related disorder [RCV003917188] Chr1:46511199 [GRCh38]
Chr1:46976871 [GRCh37]
Chr1:1p33		 benign
NM_172225.2(DMBX1):c.444C>T (p.Ala148=) single nucleotide variant DMBX1-related disorder [RCV003982519] Chr1:46511045 [GRCh38]
Chr1:46976717 [GRCh37]
Chr1:1p33		 benign
NM_172225.2(DMBX1):c.854G>C (p.Gly285Ala) single nucleotide variant DMBX1-related disorder [RCV003944460] Chr1:46512214 [GRCh38]
Chr1:46977886 [GRCh37]
Chr1:1p33		 likely benign
NM_172225.2(DMBX1):c.1007C>G (p.Pro336Arg) single nucleotide variant DMBX1-related disorder [RCV003969717]|not specified [RCV004369891] Chr1:46512367 [GRCh38]
Chr1:46978039 [GRCh37]
Chr1:1p33		 likely benign|uncertain significance
NM_172225.2(DMBX1):c.1003C>T (p.Leu335=) single nucleotide variant DMBX1-related disorder [RCV003956835] Chr1:46512363 [GRCh38]
Chr1:46978035 [GRCh37]
Chr1:1p33		 likely benign
NM_172225.2(DMBX1):c.555G>A (p.Glu185=) single nucleotide variant DMBX1-related disorder [RCV003969144] Chr1:46511156 [GRCh38]
Chr1:46976828 [GRCh37]
Chr1:1p33		 likely benign
NM_172225.2(DMBX1):c.1111G>A (p.Gly371Arg) single nucleotide variant not specified [RCV004368489] Chr1:46512471 [GRCh38]
Chr1:46978143 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.451C>G (p.Pro151Ala) single nucleotide variant not specified [RCV004368491] Chr1:46511052 [GRCh38]
Chr1:46976724 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.375G>T (p.Gln125His) single nucleotide variant not specified [RCV004616667] Chr1:46510976 [GRCh38]
Chr1:46976648 [GRCh37]
Chr1:1p33		 uncertain significance
NM_172225.2(DMBX1):c.837G>A (p.Ser279=) single nucleotide variant DMBX1-related disorder [RCV003907200] Chr1:46512197 [GRCh38]
Chr1:46977869 [GRCh37]
Chr1:1p33		 likely benign
NM_172225.2(DMBX1):c.1121C>T (p.Thr374Met) single nucleotide variant not specified [RCV004368490] Chr1:46512481 [GRCh38]
Chr1:46978153 [GRCh37]
Chr1:1p33		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2277
Count of miRNA genes:650
Interacting mature miRNAs:728
Transcripts:ENST00000360032, ENST00000371956
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2314561GLUCO47_HGlucose level QTL 47 (human)1.1Glucose level14477336070773360Human

Markers in Region
D10S275  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map13q12.13UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map6q24UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map9q13-q21UniSTS
Cytogenetic Map3p25UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q22.3UniSTS
Cytogenetic Map9q22UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic MapXp22.2-p22.1UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map20pter-q11.23UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.3UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map3q26.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10q24.31UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map1q24-q25.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map6p24.3UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map1q21.2-q21.3UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11p14.3UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q24.3UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map6q12-q13UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2p14UniSTS
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
557 864 1088 598 2752 936 1184 3 245 533 148 1476 2333 2187 47 1710 377 1220 919 109

Sequence


Ensembl Acc Id: ENST00000360032   ⟹   ENSP00000353132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,489,836 - 46,516,216 (+)Ensembl
Ensembl Acc Id: ENST00000371956   ⟹   ENSP00000361024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl146,506,996 - 46,514,212 (+)Ensembl
RefSeq Acc Id: NM_001387775   ⟹   NP_001374704
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,489,836 - 46,516,216 (+)NCBI
T2T-CHM13v2.0146,367,063 - 46,393,431 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001387776   ⟹   NP_001374705
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,489,836 - 46,516,216 (+)NCBI
T2T-CHM13v2.0146,367,063 - 46,393,431 (+)NCBI
Sequence:
RefSeq Acc Id: NM_147192   ⟹   NP_671725
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,489,836 - 46,516,216 (+)NCBI
GRCh37146,972,668 - 46,979,898 (+)RGD
Build 36146,745,255 - 46,752,485 (+)NCBI Archive
Celera145,260,058 - 45,267,288 (+)RGD
HuRef145,088,209 - 45,095,438 (+)ENTREZGENE
CHM1_1147,089,685 - 47,096,914 (+)NCBI
T2T-CHM13v2.0146,367,063 - 46,393,431 (+)NCBI
Sequence:
RefSeq Acc Id: NM_172225   ⟹   NP_757379
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,489,836 - 46,516,216 (+)NCBI
GRCh37146,972,668 - 46,979,898 (+)RGD
Build 36146,745,255 - 46,752,485 (+)NCBI Archive
Celera145,260,058 - 45,267,288 (+)RGD
HuRef145,088,209 - 45,095,438 (+)ENTREZGENE
CHM1_1147,089,685 - 47,096,914 (+)NCBI
T2T-CHM13v2.0146,367,063 - 46,393,431 (+)NCBI
Sequence:
RefSeq Acc Id: NP_671725   ⟸   NM_147192
- Peptide Label: isoform b
- UniProtKB: Q8NFW6 (UniProtKB/Swiss-Prot),   A6NNN2 (UniProtKB/Swiss-Prot),   Q8NHD9 (UniProtKB/Swiss-Prot),   Q8NFW5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_757379   ⟸   NM_172225
- Peptide Label: isoform a
- UniProtKB: Q8NFW5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000361024   ⟸   ENST00000371956
Ensembl Acc Id: ENSP00000353132   ⟸   ENST00000360032
RefSeq Acc Id: NP_001374705   ⟸   NM_001387776
- Peptide Label: isoform b
- UniProtKB: Q8NFW6 (UniProtKB/Swiss-Prot),   Q8NFW5 (UniProtKB/Swiss-Prot),   A6NNN2 (UniProtKB/Swiss-Prot),   Q8NHD9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001374704   ⟸   NM_001387775
- Peptide Label: isoform a

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8NFW5-F1-model_v2 AlphaFold Q8NFW5 1-382 view protein structure

Promoters
RGD ID:6855426
Promoter ID:EPDNEW_H878
Type:initiation region
Name:DMBX1_1
Description:diencephalon/mesencephalon homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H879  EPDNEW_H880  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,489,836 - 46,489,896EPDNEW
RGD ID:6855428
Promoter ID:EPDNEW_H879
Type:initiation region
Name:DMBX1_3
Description:diencephalon/mesencephalon homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H878  EPDNEW_H880  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,490,527 - 46,490,587EPDNEW
RGD ID:6855430
Promoter ID:EPDNEW_H880
Type:initiation region
Name:DMBX1_2
Description:diencephalon/mesencephalon homeobox 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H878  EPDNEW_H879  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38146,506,983 - 46,507,043EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:19026 AgrOrtholog
COSMIC DMBX1 COSMIC
Ensembl Genes ENSG00000197587 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000360032 ENTREZGENE
  ENST00000360032.4 UniProtKB/Swiss-Prot
Gene3D-CATH Homeodomain-like UniProtKB/Swiss-Prot
GTEx ENSG00000197587 GTEx
HGNC ID HGNC:19026 ENTREZGENE
Human Proteome Map DMBX1 Human Proteome Map
InterPro DMBX_homeobox UniProtKB/Swiss-Prot
  Homeobox-like_sf UniProtKB/Swiss-Prot
  Homeobox_CS UniProtKB/Swiss-Prot
  Homeobox_dom UniProtKB/Swiss-Prot
  OAR_dom UniProtKB/Swiss-Prot
KEGG Report hsa:127343 UniProtKB/Swiss-Prot
NCBI Gene 127343 ENTREZGENE
OMIM 607410 OMIM
PANTHER DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 UniProtKB/Swiss-Prot
  DIENCEPHALON/MESENCEPHALON HOMEOBOX PROTEIN 1 UniProtKB/Swiss-Prot
Pfam Homeodomain UniProtKB/Swiss-Prot
  OAR UniProtKB/Swiss-Prot
PharmGKB PA38780 PharmGKB
PROSITE HOMEOBOX_1 UniProtKB/Swiss-Prot
  HOMEOBOX_2 UniProtKB/Swiss-Prot
  OAR UniProtKB/Swiss-Prot
SMART HOX UniProtKB/Swiss-Prot
Superfamily-SCOP SSF46689 UniProtKB/Swiss-Prot
UniProt A6NNN2 ENTREZGENE
  DMBX1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q8NFW6 ENTREZGENE
  Q8NHD9 ENTREZGENE
UniProt Secondary A6NNN2 UniProtKB/Swiss-Prot
  Q8NFW6 UniProtKB/Swiss-Prot
  Q8NHD9 UniProtKB/Swiss-Prot