Dennd6b (DENN domain containing 6B) - Rat Genome Database

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Gene: Dennd6b (DENN domain containing 6B) Mus musculus
Analyze
Symbol: Dennd6b
Name: DENN domain containing 6B
RGD ID: 1317536
MGI Page MGI
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be located in endosome. Predicted to be active in recycling endosome. Is expressed in central nervous system; dorsal root ganglion; and neural retina. Orthologous to human DENND6B (DENN domain containing 6B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700027J05Rik; AI414881; DENN domain-containing protein 6B; DENN/MADD domain containing 6B; Fam116; Fam116b; family with sequence similarity 116, member B; hypothetical protein LOC69440
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,066,416 - 89,080,793 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,066,416 - 89,080,699 (-)EnsemblGRCm39 Ensembl
GRCm381589,182,213 - 89,198,427 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,182,213 - 89,196,496 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,012,643 - 89,026,905 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,012,578 - 89,024,258 (-)NCBIMGSCv36mm8
Celera1591,311,411 - 91,325,670 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.7NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635  


Genomics

Comparative Map Data
Dennd6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391589,066,416 - 89,080,793 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1589,066,416 - 89,080,699 (-)EnsemblGRCm39 Ensembl
GRCm381589,182,213 - 89,198,427 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1589,182,213 - 89,196,496 (-)EnsemblGRCm38mm10GRCm38
MGSCv371589,012,643 - 89,026,905 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361589,012,578 - 89,024,258 (-)NCBIMGSCv36mm8
Celera1591,311,411 - 91,325,670 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1544.7NCBI
DENND6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382250,309,030 - 50,327,012 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2250,309,030 - 50,327,012 (-)EnsemblGRCh38hg38GRCh38
GRCh372250,747,459 - 50,765,441 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362249,092,964 - 49,100,010 (-)NCBINCBI36Build 36hg18NCBI36
Celera2234,626,857 - 34,634,095 (-)NCBICelera
Cytogenetic Map22q13.33NCBI
HuRef2233,648,422 - 33,655,557 (-)NCBIHuRef
CHM1_12250,709,132 - 50,724,188 (-)NCBICHM1_1
T2T-CHM13v2.02250,816,794 - 50,834,878 (-)NCBIT2T-CHM13v2.0
Dennd6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87122,139,159 - 122,154,720 (-)NCBIGRCr8
mRatBN7.27120,261,679 - 120,273,667 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7120,261,679 - 120,273,494 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7122,012,826 - 122,024,509 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07124,238,988 - 124,250,671 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07124,201,862 - 124,213,544 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07130,162,728 - 130,178,282 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7130,164,675 - 130,176,696 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07129,850,713 - 129,864,123 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47127,486,531 - 127,498,345 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17127,521,055 - 127,532,596 (-)NCBI
Celera7116,735,546 - 116,747,360 (-)NCBICelera
Cytogenetic Map7q34NCBI
Dennd6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541333,324,087 - 33,336,518 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541333,324,081 - 33,336,518 (-)NCBIChiLan1.0ChiLan1.0
DENND6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22360,215,602 - 60,233,210 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12262,901,777 - 62,919,489 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02230,541,364 - 30,556,150 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12249,539,957 - 49,547,463 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2249,539,957 - 49,547,464 (-)Ensemblpanpan1.1panPan2
DENND6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11016,939,946 - 16,948,777 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1016,939,093 - 16,948,689 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1016,917,015 - 16,928,053 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01017,665,772 - 17,676,809 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1017,664,878 - 17,676,807 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11017,389,904 - 17,400,935 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01017,712,993 - 17,724,036 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01017,845,365 - 17,856,403 (+)NCBIUU_Cfam_GSD_1.0
Dennd6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945498,126 - 509,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936629498,127 - 509,751 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936629498,120 - 509,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DENND6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5376,551 - 389,330 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15376,556 - 389,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
DENND6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11932,801,068 - 32,815,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604592,534,998 - 92,553,637 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dennd6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624752459,087 - 473,277 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624752459,694 - 472,606 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dennd6b
374 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1394
Count of miRNA genes:626
Interacting mature miRNAs:795
Transcripts:ENSMUST00000078953
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884442Sklq6_mskull length QTL 6, 5 week (mouse)156129481100797881Mouse
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402203102896555Mouse
26884425Cvht2_mcranial vault height 2, 5 week (mouse)1528800146102008435Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578416103425899Mouse
26884402Cvht9_mcranial vault height 9, 16 week (mouse)154216339695497881Mouse
26884397Humsd5_mhumerus midshaft diameter 5, 10 week (mouse)154836339698397881Mouse
26884399Humsd1_mhumerus midshaft diameter 1, 5 week (mouse)1548363396101708435Mouse
38501067Tip3_mtuberculosis immunophenotype 3, IFN-g level (mouse)155356339689584203Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556186708103425899Mouse
1300800Ses3_msalmonella enteritidis susceptibility 3 (mouse)Not determined155711700591117153Mouse
1357407Pfat4_mpredicted fat percentage 4 (mouse)8.6Body fat amountpredicted fat percentage155711700591117153Mouse
12880420V25Dq8_mvitamin D inactive form serum level QTL 8 (mouse)156158420095584200Mouse
1301601Faq9_mfluctuating asymmetry QTL 9 (mouse)Not determined156316390397163995Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564306334103425899Mouse
4141135Cia35_mcollagen induced arthritis 35 (mouse)Not determined156481182698811946Mouse
1301119Drb7_mdopamine receptor binding 7 (mouse)Not determined156533657899341028Mouse
1301171Brm2_mbrachyury modifier 2 (mouse)Not determined156552537699525499Mouse
4141921Pstc3_mperiosteal circumference 3 (mouse)Not determined1567270698101270847Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570345653104073951Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570349271104073951Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570349271104073951Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572382669104073951Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573430144104073951Mouse
1301472Pain1_mpain 1 (mouse)Not determined157532084690813185Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577527592104073951Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78601103102901704Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578601103102901704Mouse
14928306Manh79_mmandible shape 79 (mouse)1578847557104073951Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1578897881104073951Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579163411104073951Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined79908940104073951Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580313634104073951Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580884933104073951Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580884933104073951Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82615474104073951Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585896437104073951Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585896437104073951Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585896437104073951Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585901546104073951Mouse
1558845Alprf_malcohol preference (mouse)Not determined158734927190274568Mouse
12738413Lfibq10_mliver fibrosis QTL 10 (mouse)158784208589927286Mouse

Markers in Region
BB195788  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,182,246 - 89,182,385UniSTSGRCm38
MGSCv371589,012,676 - 89,012,815UniSTSGRCm37
Celera1591,311,444 - 91,311,583UniSTS
Cytogenetic Map15E3UniSTS
cM Map1543.0UniSTS
Whitehead/MRC_RH15808.53UniSTS
AI414881  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381589,184,863 - 89,184,990UniSTSGRCm38
MGSCv371589,015,293 - 89,015,420UniSTSGRCm37
Celera1591,314,061 - 91,314,188UniSTS
Cytogenetic Map15E3UniSTS
Whitehead/MRC_RH15816.5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_027081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030248748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC160538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB658928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC139003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ176037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ444357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY252285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY748566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ976556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000078953   ⟹   ENSMUSP00000077978
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,066,416 - 89,080,651 (-)Ensembl
GRCm38.p6 Ensembl1589,182,213 - 89,196,448 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,069,015 - 89,073,047 (-)Ensembl
GRCm38.p6 Ensembl1589,184,812 - 89,188,844 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229755   ⟹   ENSMUSP00000155612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,069,020 - 89,080,647 (-)Ensembl
GRCm38.p6 Ensembl1589,184,817 - 89,196,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000229935
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,066,420 - 89,080,699 (-)Ensembl
GRCm38.p6 Ensembl1589,182,217 - 89,196,496 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,069,015 - 89,074,512 (-)Ensembl
GRCm38.p6 Ensembl1589,184,812 - 89,190,309 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1589,069,022 - 89,080,668 (-)Ensembl
GRCm38.p6 Ensembl1589,184,819 - 89,196,465 (-)Ensembl
RefSeq Acc Id: NM_027081   ⟹   NP_081357
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,066,416 - 89,080,677 (-)NCBI
GRCm381589,182,213 - 89,196,474 (-)ENTREZGENE
MGSCv371589,012,643 - 89,026,905 (-)RGD
Celera1591,311,411 - 91,325,670 (-)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030248744   ⟹   XP_030104604
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,066,419 - 89,080,671 (-)NCBI
GRCm381589,182,213 - 89,198,427 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248747   ⟹   XP_030104607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,066,419 - 89,080,677 (-)NCBI
GRCm381589,182,213 - 89,196,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030248748   ⟹   XP_030104608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391589,066,416 - 89,080,793 (-)NCBI
GRCm381589,182,213 - 89,196,590 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_081357   ⟸   NM_027081
- UniProtKB: B2RSU3 (UniProtKB/Swiss-Prot),   Q9D9V7 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030104604   ⟸   XM_030248744
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030104608   ⟸   XM_030248748
- Peptide Label: isoform X3
RefSeq Acc Id: XP_030104607   ⟸   XM_030248747
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000077978   ⟸   ENSMUST00000078953
RefSeq Acc Id: ENSMUSP00000155612   ⟸   ENSMUST00000229755
Protein Domains
cDENN   dDENN   uDENN

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D9V7-F1-model_v2 AlphaFold Q9D9V7 1-585 view protein structure

Promoters
RGD ID:6847166
Promoter ID:MM_ACW:19042
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:1700027J05RIK.JSEP07-UNSPLICED,   1700027J05RIK.LSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361589,015,181 - 89,015,681 (-)MPROMDB
RGD ID:6825574
Promoter ID:MM_KWN:19408
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:UC007XFS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361589,020,131 - 89,020,631 (-)MPROMDB
RGD ID:6825575
Promoter ID:MM_KWN:19410
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:NM_027081,   NM_027081_FAM116B,   UC007XFT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361589,026,511 - 89,027,011 (-)MPROMDB
RGD ID:8684712
Promoter ID:EPDNEW_M20387
Type:multiple initiation site
Name:Dennd6b_2
Description:Mus musculus DENN/MADD domain containing 6B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20388  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381589,187,427 - 89,187,487EPDNEW
RGD ID:8684714
Promoter ID:EPDNEW_M20388
Type:initiation region
Name:Dennd6b_1
Description:Mus musculus DENN/MADD domain containing 6B , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20387  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381589,196,473 - 89,196,533EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916690 AgrOrtholog
Ensembl Genes ENSMUSG00000015377 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000078953 ENTREZGENE
  ENSMUST00000078953.9 UniProtKB/Swiss-Prot
  ENSMUST00000229755.2 UniProtKB/TrEMBL
InterPro cDENN_dom UniProtKB/Swiss-Prot
  DENND6 UniProtKB/Swiss-Prot
  Tripartite_DENN UniProtKB/Swiss-Prot
KEGG Report mmu:69440 UniProtKB/Swiss-Prot
MGD MGI:1916690 ENTREZGENE
NCBI Gene 69440 ENTREZGENE
PANTHER PROTEIN DENND6B UniProtKB/Swiss-Prot
  PTHR13677 UniProtKB/Swiss-Prot
Pfam DENN UniProtKB/Swiss-Prot
PhenoGen Dennd6b PhenoGen
PROSITE DENN UniProtKB/Swiss-Prot
UniProt A0A2R8VKJ9_MOUSE UniProtKB/TrEMBL
  B2RSU3 ENTREZGENE
  DEN6B_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary B2RSU3 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-11-29 Dennd6b  DENN domain containing 6B  Dennd6b  DENN/MADD domain containing 6B  Symbol and/or name change 5135510 APPROVED
2012-11-27 Dennd6b  DENN/MADD domain containing 6B  Fam116b  family with sequence similarity 116, member B  Symbol and/or name change 5135510 APPROVED