Odr4 (odr4 GPCR localization factor homolog) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Odr4 (odr4 GPCR localization factor homolog) Mus musculus
Analyze
Symbol: Odr4
Name: odr4 GPCR localization factor homolog
RGD ID: 1317254
MGI Page MGI
Description: Predicted to be involved in protein localization. Predicted to be located in membrane. Is expressed in several structures, including choroid invagination; craniocervical region bone; embryo mesenchyme; meninges; and sensory organ. Orthologous to human ODR4 (odr-4 GPCR localization factor homolog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810053E15Rik; BC003331; cDNA sequence BC003331; MGC7150; mODR-4; odr-4; olfactory specific odr-4; protein odr-4 homolog; RIKEN cDNA 1810053E15 gene
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Ps-modr4  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,237,056 - 150,268,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,237,056 - 150,268,831 (-)EnsemblGRCm39 Ensembl
GRCm381150,361,305 - 150,393,080 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,361,305 - 150,393,080 (-)EnsemblGRCm38mm10GRCm38
MGSCv371152,208,441 - 152,240,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361152,124,739 - 152,152,574 (-)NCBIMGSCv36mm8
Celera1152,800,497 - 152,832,235 (-)NCBICelera
Cytogenetic Map1G1NCBI
cM Map163.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808  
PMID:18554416   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:30550785  


Genomics

Comparative Map Data
Odr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391150,237,056 - 150,268,831 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1150,237,056 - 150,268,831 (-)EnsemblGRCm39 Ensembl
GRCm381150,361,305 - 150,393,080 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1150,361,305 - 150,393,080 (-)EnsemblGRCm38mm10GRCm38
MGSCv371152,208,441 - 152,240,185 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361152,124,739 - 152,152,574 (-)NCBIMGSCv36mm8
Celera1152,800,497 - 152,832,235 (-)NCBICelera
Cytogenetic Map1G1NCBI
cM Map163.84NCBI
ODR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381186,375,838 - 186,435,031 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1186,375,838 - 186,421,378 (+)EnsemblGRCh38hg38GRCh38
GRCh371186,344,970 - 186,390,507 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361184,611,624 - 184,657,126 (+)NCBINCBI36Build 36hg18NCBI36
Build 341183,076,657 - 183,122,159NCBI
Celera1159,455,598 - 159,501,227 (+)NCBICelera
Cytogenetic Map1q31.1NCBI
HuRef1157,579,409 - 157,625,044 (+)NCBIHuRef
CHM1_11187,766,629 - 187,812,246 (+)NCBICHM1_1
T2T-CHM13v2.01185,730,569 - 185,776,136 (+)NCBIT2T-CHM13v2.0
Odr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81364,925,573 - 64,974,395 (-)NCBIGRCr8
mRatBN7.21362,369,109 - 62,424,287 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1362,394,608 - 62,424,209 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01367,578,904 - 67,611,605 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1367,583,621 - 67,609,469 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01372,543,336 - 72,576,416 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41364,660,070 - 64,686,348 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11364,674,635 - 64,700,445 (-)NCBI
Celera1362,352,573 - 62,384,680 (-)NCBICelera
Cytogenetic Map13q21NCBI
Odr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540624,812,094 - 24,839,524 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540624,806,462 - 24,837,703 (+)NCBIChiLan1.0ChiLan1.0
ODR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2163,170,428 - 63,343,628 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1162,872,543 - 63,024,993 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,903,661 - 162,054,747 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11166,055,303 - 166,098,209 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1166,059,265 - 166,098,209 (+)Ensemblpanpan1.1panPan2
ODR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1719,442,748 - 19,483,823 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl719,443,071 - 19,482,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha718,964,369 - 19,005,440 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0719,178,829 - 19,219,905 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl719,179,152 - 19,219,884 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1719,085,592 - 19,126,821 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0719,194,837 - 19,236,064 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0719,325,701 - 19,366,996 (+)NCBIUU_Cfam_GSD_1.0
Odr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934486,070,339 - 86,203,879 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364814,001,318 - 4,050,642 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9127,540,531 - 127,619,134 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19127,540,448 - 127,742,976 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29139,992,556 - 140,033,094 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ODR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12543,014,124 - 43,056,521 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2543,021,363 - 43,056,547 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605544,203,308 - 44,245,715 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Odr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248147,221,089 - 7,248,959 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1842
Count of miRNA genes:469
Interacting mature miRNAs:562
Transcripts:ENSMUST00000006167, ENSMUST00000094477, ENSMUST00000097546, ENSMUST00000097547, ENSMUST00000111913, ENSMUST00000132809, ENSMUST00000140112, ENSMUST00000148389, ENSMUST00000150615
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
1301135Pas8_mpulmonary adenoma susceptibility 8 (mouse)Not determined1147125258158233272Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
13452392Ity3a_mimmunity to S. typhimurium 3a (mouse)1149028612154228616Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
12880408V125Dq3_mvitamin D active form serum level QTL 3 (mouse)1122927738156927738Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
27226743Metcl7_mmetatarsal-calcaneal length 7, 10 week (mouse)1121727729153875746Mouse
27226740Metcl13_mmetatarsal-calcaneal length 13, 16 week (mouse)1121727729153775746Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1301608Emo3_memotionality 3 (mouse)Not determined1129130858163130993Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC161432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ298076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE134939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY247764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB235715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX243768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ077804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ417871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000006167   ⟹   ENSMUSP00000006167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,238,272 - 150,268,470 (-)Ensembl
GRCm38.p6 Ensembl1150,362,521 - 150,392,719 (-)Ensembl
Ensembl Acc Id: ENSMUST00000094477   ⟹   ENSMUSP00000092050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,238,285 - 150,268,494 (-)Ensembl
GRCm38.p6 Ensembl1150,362,534 - 150,392,743 (-)Ensembl
Ensembl Acc Id: ENSMUST00000097546   ⟹   ENSMUSP00000095152
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,237,064 - 150,268,806 (-)Ensembl
GRCm38.p6 Ensembl1150,361,313 - 150,393,055 (-)Ensembl
Ensembl Acc Id: ENSMUST00000097547   ⟹   ENSMUSP00000095153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,237,064 - 150,268,513 (-)Ensembl
GRCm38.p6 Ensembl1150,361,313 - 150,392,762 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111913   ⟹   ENSMUSP00000107544
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,237,056 - 150,268,831 (-)Ensembl
GRCm38.p6 Ensembl1150,361,305 - 150,393,080 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132809
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,250,555 - 150,258,225 (-)Ensembl
GRCm38.p6 Ensembl1150,374,804 - 150,382,474 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140112
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,263,762 - 150,268,498 (-)Ensembl
GRCm38.p6 Ensembl1150,388,011 - 150,392,747 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148389
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,251,283 - 150,268,688 (-)Ensembl
GRCm38.p6 Ensembl1150,375,532 - 150,392,937 (-)Ensembl
Ensembl Acc Id: ENSMUST00000150615
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1150,260,033 - 150,268,499 (-)Ensembl
GRCm38.p6 Ensembl1150,384,282 - 150,392,748 (-)Ensembl
RefSeq Acc Id: NM_001077237   ⟹   NP_001070705
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,237,062 - 150,268,806 (-)NCBI
GRCm381150,361,311 - 150,393,055 (-)ENTREZGENE
MGSCv371152,208,441 - 152,240,185 (-)RGD
Celera1152,800,497 - 152,832,235 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357579   ⟹   NP_001344508
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,237,056 - 150,268,831 (-)NCBI
GRCm381150,361,305 - 150,393,080 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145511   ⟹   NP_663486
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,237,062 - 150,268,806 (-)NCBI
GRCm381150,361,311 - 150,393,055 (-)ENTREZGENE
MGSCv371152,208,441 - 152,240,185 (-)RGD
Celera1152,800,497 - 152,832,235 (-)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_036163988   ⟹   XP_036019881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,237,062 - 150,268,532 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163989   ⟹   XP_036019882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391150,237,062 - 150,268,532 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001070705   ⟸   NM_001077237
- Peptide Label: isoform 2
- UniProtKB: Q4PJX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_663486   ⟸   NM_145511
- Peptide Label: isoform 1
- UniProtKB: Q3U8Y3 (UniProtKB/Swiss-Prot),   Q99J66 (UniProtKB/Swiss-Prot),   Q4PJX1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344508   ⟸   NM_001357579
- Peptide Label: isoform 3 precursor
Ensembl Acc Id: ENSMUSP00000107544   ⟸   ENSMUST00000111913
Ensembl Acc Id: ENSMUSP00000006167   ⟸   ENSMUST00000006167
Ensembl Acc Id: ENSMUSP00000092050   ⟸   ENSMUST00000094477
Ensembl Acc Id: ENSMUSP00000095153   ⟸   ENSMUST00000097547
Ensembl Acc Id: ENSMUSP00000095152   ⟸   ENSMUST00000097546
RefSeq Acc Id: XP_036019882   ⟸   XM_036163989
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036019881   ⟸   XM_036163988
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4PJX1-F1-model_v2 AlphaFold Q4PJX1 1-447 view protein structure

Promoters
RGD ID:6875204
Promoter ID:EPDNEW_M1052
Type:multiple initiation site
Name:BC003331_1
Description:Mus musculus cDNA sequence BC003331 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1054  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381150,392,750 - 150,392,810EPDNEW
RGD ID:6875208
Promoter ID:EPDNEW_M1054
Type:initiation region
Name:BC003331_2
Description:Mus musculus cDNA sequence BC003331 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M1052  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381150,393,062 - 150,393,122EPDNEW
RGD ID:6817422
Promoter ID:MM_KWN:2370
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_2Hour,   Brain,   Kidney,   Liver,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000006167,   ENSMUST00000094477,   ENSMUST00000097546,   ENSMUST00000111912,   NM_001077237,   OTTMUST00000051349,   OTTMUST00000051353,   OTTMUST00000051354,   OTTMUST00000051355
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361152,239,751 - 152,240,251 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2385108 AgrOrtholog
Ensembl Genes ENSMUSG00000006010 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000006167.13 UniProtKB/Swiss-Prot
  ENSMUST00000094477.4 UniProtKB/TrEMBL
  ENSMUST00000097546.9 UniProtKB/Swiss-Prot
  ENSMUST00000097547 ENTREZGENE
  ENSMUST00000097547.10 UniProtKB/Swiss-Prot
  ENSMUST00000111913 ENTREZGENE
  ENSMUST00000111913.9 UniProtKB/Swiss-Prot
InterPro ODR-4-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:226499 UniProtKB/Swiss-Prot
MGD MGI:2385108 ENTREZGENE
NCBI Gene 226499 ENTREZGENE
PANTHER PROTEIN ODR-4 HOMOLOG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR33966 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ODR4-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Odr4 PhenoGen
UniProt A0A0A0MQB0_MOUSE UniProtKB/TrEMBL
  ODR4_MOUSE UniProtKB/Swiss-Prot
  Q3U8Y3 ENTREZGENE
  Q4PJX1 ENTREZGENE
  Q99J66 ENTREZGENE
UniProt Secondary Q3U8Y3 UniProtKB/Swiss-Prot
  Q99J66 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Odr4  odr4 GPCR localization factor homolog  BC003331  cDNA sequence BC003331  Symbol and/or name change 5135510 APPROVED
2016-03-10 BC003331  cDNA sequence BC003331  1810053E15Rik  RIKEN cDNA 1810053E15 gene  Data merged from RGD:1609495 737654 PROVISIONAL