ODR4 (odr-4 GPCR localization factor homolog)

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Gene: ODR4 (odr-4 GPCR localization factor homolog) Chlorocebus sabaeus

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Symbol:

ODR4

Name:

odr-4 GPCR localization factor homolog

RGD ID:

18701725

Description:

INVOLVED IN protein localization (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN endomembrane system (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C25H1orf27; protein odr-4 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	43,014,124 - 43,056,521 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	43,021,363 - 43,056,547 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	44,203,308 - 44,245,715 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

gastrointestinal stromal tumor (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein localization (IEA)

Cellular Component

endomembrane system (IEA)

membrane (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

ODR4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	43,014,124 - 43,056,521 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	43,021,363 - 43,056,547 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	44,203,308 - 44,245,715 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

ODR4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	186,375,838 - 186,435,031 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	186,375,838 - 186,421,378 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	186,344,970 - 186,390,507 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	184,611,624 - 184,657,126 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	183,076,657 - 183,122,159	NCBI
Celera	1	159,455,598 - 159,501,227 (+)	NCBI		Celera
Cytogenetic Map	1	q31.1	NCBI
HuRef	1	157,579,409 - 157,625,044 (+)	NCBI		HuRef
CHM1_1	1	187,766,629 - 187,812,246 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	185,730,569 - 185,776,136 (+)	NCBI		T2T-CHM13v2.0

Odr4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	150,237,056 - 150,268,831 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	150,237,056 - 150,268,831 (-)	Ensembl		GRCm39 Ensembl
GRCm38	1	150,361,305 - 150,393,080 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	150,361,305 - 150,393,080 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	152,208,441 - 152,240,185 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	152,124,739 - 152,152,574 (-)	NCBI		MGSCv36	mm8
Celera	1	152,800,497 - 152,832,235 (-)	NCBI		Celera
Cytogenetic Map	1	G1	NCBI
cM Map	1	63.84	NCBI

Odr4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	64,925,573 - 64,974,395 (-)	NCBI		GRCr8
mRatBN7.2	13	62,369,109 - 62,424,287 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	62,394,608 - 62,424,209 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	13	67,578,904 - 67,611,605 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	67,583,621 - 67,609,469 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	72,543,336 - 72,576,416 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	64,660,070 - 64,686,348 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	64,674,635 - 64,700,445 (-)	NCBI
Celera	13	62,352,573 - 62,384,680 (-)	NCBI		Celera
Cytogenetic Map	13	q21	NCBI

Odr4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	24,812,094 - 24,839,524 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	24,806,462 - 24,837,703 (+)	NCBI	ChiLan1.0	ChiLan1.0

ODR4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	63,170,428 - 63,343,628 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	62,872,543 - 63,024,993 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	161,903,661 - 162,054,747 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	166,055,303 - 166,098,209 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	166,059,265 - 166,098,209 (+)	Ensembl	panpan1.1		panPan2

ODR4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	19,442,748 - 19,483,823 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	19,443,071 - 19,482,121 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	18,964,369 - 19,005,440 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	19,178,829 - 19,219,905 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	19,179,152 - 19,219,884 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	19,085,592 - 19,126,821 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	19,194,837 - 19,236,064 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	19,325,701 - 19,366,996 (+)	NCBI		UU_Cfam_GSD_1.0

Odr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	86,070,339 - 86,203,879 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936481	4,001,318 - 4,050,642 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ODR4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	127,540,531 - 127,619,134 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	127,540,448 - 127,742,976 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	139,992,556 - 140,033,094 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Odr4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624814	7,221,089 - 7,248,959 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
76	36	20	36	36	60	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007989157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_007989158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_037985806	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005236123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_496549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000011396 ⟹ ENSCSAP00000009470

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	25	43,021,363 - 43,056,547 (-)	Ensembl

RefSeq Acc Id:

XM_007989157 ⟹ XP_007987348

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	43,014,124 - 43,056,519 (-)	NCBI
Vero_WHO_p1.0	NW_023666055	44,203,308 - 44,245,715 (-)	NCBI

Sequence:

show sequence

TGGAGTGGGAAGTGAGGTGTGGGAAGTAGGTCGCTTTCTGATGAATTAAGTGGCAGTGAATTGA
GACCGGAGGGAATCTGGCCCCTAGAGGCTGGTACTTGCGCCCCAAAACCCCATCTCCGGCAGAC
AAACTGTCCGAGGTAATTGTCGGCCACGAGTGCACATTCTGAAAACAGGAGATTTTAGTTCCTA
AAAATGGGAAGAACCTACATTGTAGAAGAGACTGTTGGCCAGTATCTTTCAAACATAAATCTCC
AAGGAAAGGCTTTTGTCTCTGGCCTTTTAATAGGACAGTGTTCTTCACAAAAGGATTATGTGAT
TCTTGCCACTAGAACGCCCCCCAAAGAGGAACAAAGTGAGAACCTCAAACATCCCAAAGCTAAG
TTGGATAACTTGGATGAAGAATGGGCCACAGAACATGCCTACCAGGTATCCAGAATGCTACCAG
GGGGACTTTTAGTTCTTGGAGTATTTATTATTACTACTTTAGAACTGGCAAATGATTTTCAAAA
TGCCCTGCGTAGACTAATGTATGCTGTGGAAAAGTCTATAAATAGAAAGAGATTGTGGAATTTC
ACAGAGGAGGAGGTCTCAGAACGAGTGACACTTCACATTTGTGCTTCTACAAAAAAAATATTTT
GTCGAACTTACGATATGCATGATCCAAAGGGTTCAGCAAGACCAGCAGATTGGAAGTATCAAAG
TGGATTATTATCCTCATGGCTTTCTTTAGAGTGTACAGTTCACATTAATATTCATATCCCACTT
TCTGCTACTTCTGTCAGCTATACTCTGGAGAAAAATACAAAGAATGGACTTACACGCTGGGCCA
AGGAAATAGAAAATGGTGTTTATTTGATTAACGGACAAGTTAAAGATGAAGATTGTGACCTATT
AGAAGGACAGAAAAAATCTTCTAGAGGAAATACTCAAGCAACTAGTCATTCTTTTGATGTCAGA
GTGCTAACGCAGTTGCTCCTGAATTCAGACCACAGATCCACAGCCACAGTCCAGATATGTAGCG
GTTCTGTAAACCTTAAGGGTACTGTGAAATGCAGAGCTTATATCCACAGCAGTAAACCCAAAGT
TAAAGATGCTGTGCAGGCAGTAAAGAGGGATATATTGAACACAGTTGCTGATCGTTGTGAAATA
CTATTTGAGGATCTGCTTTTGAATGAAATTCCAGAAAAAAAAGATTCTGAAAAAGAGTTCCACA
TCCTCCCTTATCGAGTCTTTGTTCCCCTTCCTGGATCCACTGTAATGTTGTGTGATTACAAATT
TGATGATGAGCCGGCGGAAGAAATCAGGGACCATTTTATGGAGATGTTGGATCATACAATTCAA
ATAGAAGATTTGAAAATTGCAGAGGAAATAAACACAGCTTGTATGAGTTCCTCTATGAATTGTC
AAGCTTCATTGGACAACACAGATGATGAACAACCAAAACAACCAATTAAAACTACAATGTTACT
GAAAATTCAGCAAAACATAGGTGTGATTGCAGCATTTACAGTTGCAGTCCTTGCTGCTGGTATC
TCCTTTCATTACTTCAGTGATTAGGGTGAGGCACAAAGAGTTTCTTGATCATCCAGAGAACATT
GACAGATAATTATGAATAATAAAGATGTTAATCCATCTGTATTTAAAACAGTAGCAGCCAGATC
TGCTGCCATGATGCCTATTTGGTGTGTTTCTGATTAAAATGAAATCACAAGCTGCCTTGTTTAG
TCTGCTTTACATTGTAGGTGGCCCACATTTCCAGAAATAAAGTTATGCATCTAGATGGAA

hide sequence

RefSeq Acc Id:

XM_007989158 ⟹ XP_007987349

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	25	43,014,124 - 43,056,518 (-)	NCBI
Vero_WHO_p1.0	NW_023666055	44,203,308 - 44,245,715 (-)	NCBI

Sequence:

show sequence

GGAGTGGGAAGTGAGGTGTGGGAAGTAGGTCGCTTTCTGATGAATTAAGTGGCAGTGAATTGAG
ACCGGAGGGAATCTGGCCCCTAGAGGCTGGTACTTGCGCCCCAAAACCCCATCTCCGGCAGACA
AACTGTCCGAGGTAATTGTCGGCCACGAGTGCACATTCTGAAAACAGGAGATTTTAGTTCCTAA
AAATGGGAAGAACCTACATTGTAGAAGAGACTGTTGGCCAGTATCTTTCAAACATAAATCTCCA
AGGAAAGGCTTTTGTCTCTGGCCTTTTAATAGGACAGAACGCCCCCCAAAGAGGAACAAAGTGA
GAACCTCAAACATCCCAAAGCTAAGTTGGATAACTTGGATGAAGAATGGGCCACAGAACATGCC
TACCAGGTATCCAGAATGCTACCAGGGGGACTTTTAGTTCTTGGAGTATTTATTATTACTACTT
TAGAACTGGCAAATGATTTTCAAAATGCCCTGCGTAGACTAATGTATGCTGTGGAAAAGTCTAT
AAATAGAAAGAGATTGTGGAATTTCACAGAGGAGGAGGTCTCAGAACGAGTGACACTTCACATT
TGTGCTTCTACAAAAAAAATATTTTGTCGAACTTACGATATGCATGATCCAAAGGGTTCAGCAA
GACCAGCAGATTGGAAGTATCAAAGTGGATTATTATCCTCATGGCTTTCTTTAGAGTGTACAGT
TCACATTAATATTCATATCCCACTTTCTGCTACTTCTGTCAGCTATACTCTGGAGAAAAATACA
AAGAATGGACTTACACGCTGGGCCAAGGAAATAGAAAATGGTGTTTATTTGATTAACGGACAAG
TTAAAGATGAAGATTGTGACCTATTAGAAGGACAGAAAAAATCTTCTAGAGGAAATACTCAAGC
AACTAGTCATTCTTTTGATGTCAGAGTGCTAACGCAGTTGCTCCTGAATTCAGACCACAGATCC
ACAGCCACAGTCCAGATATGTAGCGGTTCTGTAAACCTTAAGGGTACTGTGAAATGCAGAGCTT
ATATCCACAGCAGTAAACCCAAAGTTAAAGATGCTGTGCAGGCAGTAAAGAGGGATATATTGAA
CACAGTTGCTGATCGTTGTGAAATACTATTTGAGGATCTGCTTTTGAATGAAATTCCAGAAAAA
AAAGATTCTGAAAAAGAGTTCCACATCCTCCCTTATCGAGTCTTTGTTCCCCTTCCTGGATCCA
CTGTAATGTTGTGTGATTACAAATTTGATGATGAGCCGGCGGAAGAAATCAGGGACCATTTTAT
GGAGATGTTGGATCATACAATTCAAATAGAAGATTTGAAAATTGCAGAGGAAATAAACACAGCT
TGTATGAGTTCCTCTATGAATTGTCAAGCTTCATTGGACAACACAGATGATGAACAACCAAAAC
AACCAATTAAAACTACAATGTTACTGAAAATTCAGCAAAACATAGGTGTGATTGCAGCATTTAC
AGTTGCAGTCCTTGCTGCTGGTATCTCCTTTCATTACTTCAGTGATTAGGGTGAGGCACAAAGA
GTTTCTTGATCATCCAGAGAACATTGACAGATAATTATGAATAATAAAGATGTTAATCCATCTG
TATTTAAAACAGTAGCAGCCAGATCTGCTGCCATGATGCCTATTTGGTGTGTTTCTGATTAAAA
TGAAATCACAAGCTGCCTTGTTTAGTCTGCTTTACATTGTAGGTGGCCCACATTTCCAGAAATA
AAGTTATGCATCTAGATGGAA

hide sequence

RefSeq Acc Id:

XM_037985806 ⟹ XP_037841734

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	44,212,724 - 44,245,715 (-)	NCBI

RefSeq Acc Id:

XR_005236123

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
Vero_WHO_p1.0	NW_023666055	44,203,372 - 44,245,715 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_007987348	(Get FASTA)	NCBI Sequence Viewer
	XP_007987349	(Get FASTA)	NCBI Sequence Viewer
	XP_037841734	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009470.1

RefSeq Acc Id:	XP_007987348 ⟸ XM_007989157
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RLI1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007987349 ⟸ XM_007989158
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSCSAP00000009470 ⟸ ENSCSAT00000011396

RefSeq Acc Id:	XP_037841734 ⟸ XM_037985806
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RLI1 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000013300	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000011396.1	UniProtKB/TrEMBL
InterPro	ODR-4-like	UniProtKB/TrEMBL
NCBI Gene	ODR4	ENTREZGENE
PANTHER	PROTEIN ODR-4 HOMOLOG	UniProtKB/TrEMBL
	PTHR33966	UniProtKB/TrEMBL
Pfam	ODR4-like	UniProtKB/TrEMBL
UniProt	A0A0D9RLI1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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