SLC41A2 (solute carrier family 41 member 2) - Rat Genome Database

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Gene: SLC41A2 (solute carrier family 41 member 2) Homo sapiens
Analyze
Symbol: SLC41A2
Name: solute carrier family 41 member 2
RGD ID: 1316398
HGNC Page HGNC:31045
Description: Predicted to enable magnesium ion transmembrane transporter activity. Involved in magnesium ion transport. Located in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp434K0427; MGC125330; MGC125331; SLC41A1-L1; SLC41A1-like 1; solute carrier family 41 (magnesium transporter), member 2; solute carrier family 41, member 2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: LOC100130329  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,801,801 - 104,958,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,801,801 - 104,958,744 (-)EnsemblGRCh38hg38GRCh38
GRCh3712105,195,579 - 105,352,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,722,491 - 103,846,562 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412103,700,830 - 103,824,900NCBI
Celera12104,861,914 - 104,987,145 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12102,256,271 - 102,381,704 (-)NCBIHuRef
CHM1_112105,163,071 - 105,288,259 (-)NCBICHM1_1
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 132 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC41A2Human(-)-epigallocatechin 3-gallate multiple interactionsEXP 6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of SLC41A2 mRNACTDPMID:22079256
SLC41A2Human1,2-dichloroethane increases expressionISOSlc41a2 (Mus musculus)6480464ethylene dichloride results in increased expression of SLC41A2 mRNACTDPMID:28189721 and PMID:28960355
SLC41A2Human1,2-dimethylhydrazine decreases expressionISOSlc41a2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of SLC41A2 mRNACTDPMID:22206623
SLC41A2Human17beta-estradiol increases expressionISOSlc41a2 (Mus musculus)6480464Estradiol results in increased expression of SLC41A2 mRNACTDPMID:19484750 and PMID:39298647
SLC41A2Human17beta-estradiol increases expressionISOSlc41a2 (Rattus norvegicus)6480464Estradiol results in increased expression of SLC41A2 mRNACTDPMID:32145629
SLC41A2Human17beta-estradiol multiple interactionsISOSlc41a2 (Rattus norvegicus)6480464[bisphenol A co-treated with Estradiol] results in decreased expression of SLC41A2 mRNACTDPMID:26496021
SLC41A2Human2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOSlc41a2 (Mus musculus)64804642 more ...CTDPMID:30294300
SLC41A2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of SLC41A2 mRNACTDPMID:20106945
SLC41A2Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOSlc41a2 (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to SLC41A2 gene]CTDPMID:28213091
SLC41A2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSlc41a2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SLC41A2 mRNACTDPMID:28922406
SLC41A2Human2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOSlc41a2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of SLC41A2 mRNACTDPMID:21889950 and PMID:28213091
SLC41A2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSlc41a2 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of SLC41A2 mRNACTDPMID:22298810
SLC41A2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOSlc41a2 (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of SLC41A2 mRNACTDPMID:19692669
SLC41A2Human2,4-dibromophenyl 2,4,5-tribromophenyl ether increases expressionEXP 64804642 more ...CTDPMID:26705709
SLC41A2Human2,4-dinitrotoluene affects expressionISOSlc41a2 (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of SLC41A2 mRNACTDPMID:21346803
SLC41A2Human2,6-dinitrotoluene affects expressionISOSlc41a2 (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of SLC41A2 mRNACTDPMID:21346803
SLC41A2Human3,3',4,4',5-pentachlorobiphenyl increases expressionISOSlc41a2 (Rattus norvegicus)64804643 more ...CTDPMID:19692669
SLC41A2Human4,4'-sulfonyldiphenol affects expressionISOSlc41a2 (Mus musculus)6480464bisphenol S affects the expression of SLC41A2 mRNACTDPMID:39298647
SLC41A2Human4-amino-2,6-dinitrotoluene affects expressionISOSlc41a2 (Rattus norvegicus)64804644-amino-2 and 6-dinitrotoluene affects the expression of SLC41A2 mRNACTDPMID:21346803
SLC41A2Human6-propyl-2-thiouracil decreases expressionISOSlc41a2 (Rattus norvegicus)6480464Propylthiouracil results in decreased expression of SLC41A2 mRNACTDPMID:25825206

1 to 20 of 132 rows

Biological Process
1 to 18 of 18 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC41A2Humancobalt ion transport involved_inIEAUniProtKB:Q8BYR8 and ensembl:ENSMUSP00000036690150520179 EnsemblGO_REF:0000107
SLC41A2Humancobalt ion transport involved_inISSUniProtKB:Q8BYR8150520179 UniProtGO_REF:0000024
SLC41A2Humaniron ion transport involved_inIEAUniProtKB:Q8BYR8 and ensembl:ENSMUSP00000036690150520179 EnsemblGO_REF:0000107
SLC41A2Humaniron ion transport involved_inISSUniProtKB:Q8BYR8150520179 UniProtGO_REF:0000024
SLC41A2Humanmagnesium ion transmembrane transport involved_inIEAGO:0015095150520179 GOCGO_REF:0000108
SLC41A2Humanmagnesium ion transport involved_inIDA 150520179 PMID:16984228UniProtPMID:16984228
SLC41A2Humanmagnesium ion transport involved_inIEAUniProtKB:Q8BYR8 and ensembl:ENSMUSP00000036690150520179 EnsemblGO_REF:0000107
SLC41A2Humanmagnesium ion transport involved_inIEAARBA:ARBA00027817150520179 UniProtGO_REF:0000117
SLC41A2Humanmanganese ion transport involved_inISSUniProtKB:Q8BYR8150520179 UniProtGO_REF:0000024
SLC41A2Humanmanganese ion transport involved_inIEAUniProtKB:Q8BYR8 and ensembl:ENSMUSP00000036690150520179 EnsemblGO_REF:0000107
SLC41A2Humanmetal ion transport involved_inIEAUniRule:UR001627763150520179 UniProtGO_REF:0000104
SLC41A2Humanmetal ion transport acts_upstream_of_or_withinIEAUniProtKB:Q8BYR8 and ensembl:ENSMUSP00000036690150520179 EnsemblGO_REF:0000107
SLC41A2Humanmonoatomic cation transmembrane transport involved_inIEAGO:0008324150520179 GOCGO_REF:0000108
SLC41A2Humanmonoatomic cation transport involved_inIEAInterPro:IPR006667 and InterPro:IPR036739150520179 InterProGO_REF:0000002
SLC41A2Humanmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-0406150520179 UniProtGO_REF:0000043
SLC41A2Humannickel cation transport involved_inISSUniProtKB:Q8BYR8150520179 UniProtGO_REF:0000024
SLC41A2Humannickel cation transport involved_inIEAUniProtKB:Q8BYR8 and ensembl:ENSMUSP00000036690150520179 EnsemblGO_REF:0000107
SLC41A2Humantransmembrane transport involved_inIEAGO:0022890150520179 GOCGO_REF:0000108
1 to 18 of 18 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
SLC41A2Humanmembrane located_inIEAUniProtKB-SubCell:SL-0162150520179 UniProtGO_REF:0000044
SLC41A2Humanmembrane located_inIEAUniRule:UR001627763150520179 UniProtGO_REF:0000104
SLC41A2Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
SLC41A2Humanplasma membrane is_active_inIBAPANTHER:PTN001045280 more ...150520179 GO_CentralGO_REF:0000033
SLC41A2Humanplasma membrane located_inIEAUniProtKB-SubCell:SL-0039150520179 UniProtGO_REF:0000044
SLC41A2Humanplasma membrane located_inIEAUniProtKB-KW:KW-1003150520179 UniProtGO_REF:0000043
SLC41A2Humanplasma membrane located_inTAS 150520179 ReactomeReactome:R-HSA-442661
SLC41A2Humanplasma membrane located_inIDA 150520179 PMID:16984228UniProtPMID:16984228

Molecular Function

  


#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:11230166   PMID:12477932   PMID:12810078   PMID:14702039   PMID:15809054   PMID:16344560   PMID:16984228   PMID:17207965   PMID:21516116   PMID:21873635   PMID:24623722   PMID:25416956  
PMID:28986522   PMID:29987050   PMID:32296183   PMID:34535262  



SLC41A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812104,801,801 - 104,958,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12104,801,801 - 104,958,744 (-)EnsemblGRCh38hg38GRCh38
GRCh3712105,195,579 - 105,352,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,722,491 - 103,846,562 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412103,700,830 - 103,824,900NCBI
Celera12104,861,914 - 104,987,145 (-)NCBICelera
Cytogenetic Map12q23.3NCBI
HuRef12102,256,271 - 102,381,704 (-)NCBIHuRef
CHM1_112105,163,071 - 105,288,259 (-)NCBICHM1_1
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBIT2T-CHM13v2.0
Slc41a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391083,066,712 - 83,174,657 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1083,066,712 - 83,173,746 (-)EnsemblGRCm39 Ensembl
GRCm381083,230,848 - 83,338,037 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1083,230,848 - 83,337,882 (-)EnsemblGRCm38mm10GRCm38
MGSCv371082,693,884 - 82,800,562 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361082,660,938 - 82,767,616 (-)NCBIMGSCv36mm8
Celera1085,219,356 - 85,326,265 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1041.03NCBI
Slc41a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8722,271,298 - 22,378,764 (+)NCBIGRCr8
mRatBN7.2720,383,714 - 20,491,178 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl720,383,757 - 20,491,166 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx722,348,186 - 22,455,769 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0724,510,946 - 24,618,527 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0724,287,953 - 24,395,538 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0726,522,314 - 26,607,861 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl726,522,314 - 26,607,861 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0726,651,682 - 26,734,269 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4722,583,232 - 22,669,674 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1722,600,108 - 22,687,614 (+)NCBI
Celera717,567,910 - 17,673,805 (+)NCBICelera
Cytogenetic Map7q13NCBI
Slc41a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540539,178,611 - 39,280,839 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540539,181,396 - 39,280,789 (-)NCBIChiLan1.0ChiLan1.0
SLC41A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210112,867,604 - 113,024,405 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112112,864,244 - 113,020,784 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012102,379,820 - 102,536,622 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112105,775,458 - 105,918,039 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,778,076 - 105,918,041 (-)Ensemblpanpan1.1panPan2
SLC41A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11033,404,968 - 33,519,146 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1033,410,561 - 33,515,655 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1033,318,238 - 33,437,432 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01034,240,808 - 34,360,505 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1034,240,757 - 34,357,705 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11033,975,963 - 34,095,691 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01034,259,839 - 34,379,294 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01034,453,302 - 34,572,802 (+)NCBIUU_Cfam_GSD_1.0
Slc41a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494516,711,334 - 16,837,311 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364929,721,134 - 9,847,726 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364929,721,564 - 9,845,004 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC41A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl579,593,915 - 79,720,895 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1579,593,913 - 79,721,599 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2582,991,320 - 83,121,500 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC41A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111100,031,092 - 100,137,481 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11100,068,637 - 100,163,592 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037144,850,129 - 144,990,633 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc41a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247504,103,622 - 4,193,574 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247504,103,372 - 4,195,147 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in SLC41A2
58 total Variants

1 to 10 of 76 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 12q23.1-23.3(chr12:100670616-108583607)x1 copy number loss See cases [RCV000051320] Chr12:100670616..108583607 [GRCh38]
Chr12:101064394..108977383 [GRCh37]
Chr12:99588525..107501512 [NCBI36]
Chr12:12q23.1-23.3
pathogenic
GRCh38/hg38 12q23.3(chr12:104550262-106565399)x1 copy number loss See cases [RCV000053281] Chr12:104550262..106565399 [GRCh38]
Chr12:104944040..106959177 [GRCh37]
Chr12:103468170..105483307 [NCBI36]
Chr12:12q23.3
uncertain significance
NM_032148.3(SLC41A2):c.422A>G (p.Glu141Gly) single nucleotide variant Malignant melanoma [RCV000062382] Chr12:104928106 [GRCh38]
Chr12:105321884 [GRCh37]
Chr12:103846014 [NCBI36]
Chr12:12q23.3
not provided
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q21.33-24.11(chr12:91044318-109133210)x3 copy number gain See cases [RCV000142447] Chr12:91044318..109133210 [GRCh38]
Chr12:91438095..109571015 [GRCh37]
Chr12:89962226..108055398 [NCBI36]
Chr12:12q21.33-24.11
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12q23.1-23.3(chr12:100580198-105804075)x3 copy number gain See cases [RCV000445929] Chr12:100580198..105804075 [GRCh37]
Chr12:12q23.1-23.3
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_001352171.3(SLC41A2):c.1558G>A (p.Ala520Thr) single nucleotide variant not specified [RCV004284619] Chr12:104805316 [GRCh38]
Chr12:105199094 [GRCh37]
Chr12:12q23.3
uncertain significance
1 to 10 of 76 rows

Predicted Target Of
Summary Value
Count of predictions:1412
Count of miRNA genes:743
Interacting mature miRNAs:839
Transcripts:ENST00000258538, ENST00000411411, ENST00000415674, ENST00000417469, ENST00000424946, ENST00000432951, ENST00000433540, ENST00000437220, ENST00000449866, ENST00000549713
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 10 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1559125SPSL2_HSerum P-selectin level QTL 2 (human)2.59Serum P-selectin level1289897665115897665Human
1298449UAE2_HUrinary albumin excretion QTL 2 (human)20.005Urinary albumin excretionurine albumin:creatinine ratio (ACR)12102836889128836889Human
597216618GWAS1312692_Hresponse to beta blocker, mortality QTL GWAS1312692 (human)0.000008response to beta blocker, mortalityratio of deaths to total study population during a period of time (CMO:0001023)12104806310104806311Human
1643258BW205_HBody weight QTL 205 (human)4.080.00001Body fat amountpercent body fat1296630114122630114Human
1643452BW104_HBody weight QTL 104 (human)1.890.005Body fat amountabdominal visceral12102395874128395874Human
1357361BW37_HBody weight QTL 37 (human)4.080.00001Body fat amount12102836889116423339Human
1643264BW195_HBody weight QTL 195 (human)0.0151Body weightBMI1289897665115897665Human
597051067GWAS1147141_Hprotein measurement QTL GWAS1147141 (human)2e-08protein measurement12104877307104877308Human
1357387BW58_HBody weight QTL 58 (human)2.30.0001Body weightfat free mass after exercise training1289438856115438856Human
1358827MULTSCL22_HMultiple sclerosis susceptibility QTL 22 (human)Multiple sclerosis susceptibility1289897665115897665Human

1 to 10 of 10 rows
WI-11905  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,198,276 - 105,198,403UniSTSGRCh37
Build 3612103,722,406 - 103,722,533RGDNCBI36
Celera12104,862,915 - 104,863,042RGD
Cytogenetic Map12q23.3UniSTS
HuRef12102,257,274 - 102,257,401UniSTS
GeneMap99-GB4 RH Map12417.83UniSTS
Whitehead-RH Map12514.1UniSTS
NCBI RH Map12690.8UniSTS
G64583  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,232,413 - 105,232,633UniSTSGRCh37
Build 3612103,756,543 - 103,756,763RGDNCBI36
Celera12104,897,055 - 104,897,275RGD
Cytogenetic Map12q23.3UniSTS
SLC41A2_8112  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,198,420 - 105,199,114UniSTSGRCh37
Build 3612103,722,550 - 103,723,244RGDNCBI36
Celera12104,863,059 - 104,863,753RGD
HuRef12102,257,418 - 102,258,112UniSTS
D12S1826  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,208,764 - 105,209,008UniSTSGRCh37
Build 3612103,732,894 - 103,733,138RGDNCBI36
Celera12104,873,405 - 104,873,649RGD
Cytogenetic Map12q23.3UniSTS
HuRef12102,267,762 - 102,268,006UniSTS
Stanford-G3 RH Map124332.0UniSTS
D12S1844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3712105,236,638 - 105,236,758UniSTSGRCh37
Build 3612103,760,768 - 103,760,888RGDNCBI36
Celera12104,901,281 - 104,901,401RGD
Cytogenetic Map12q23.3UniSTS
HuRef12102,295,639 - 102,295,759UniSTS
Stanford-G3 RH Map124347.0UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2786 2253 4973 1726 2351 6 624 1917 465 2269 7267 6435 52 3734 1 852 1744 1617 174 1


1 to 30 of 45 rows
RefSeq Transcripts NM_001352169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001352170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001352171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001352172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001387133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_032148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005269179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017020017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047429650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054373426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 45 rows

Ensembl Acc Id: ENST00000258538   ⟹   ENSP00000258538
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,801,801 - 104,958,290 (-)Ensembl
Ensembl Acc Id: ENST00000411411   ⟹   ENSP00000407898
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,928,162 - 104,951,528 (-)Ensembl
Ensembl Acc Id: ENST00000415674   ⟹   ENSP00000396429
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,928,097 - 104,958,293 (-)Ensembl
Ensembl Acc Id: ENST00000417469   ⟹   ENSP00000396297
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,928,390 - 104,958,698 (-)Ensembl
Ensembl Acc Id: ENST00000424946   ⟹   ENSP00000397315
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,928,311 - 104,958,293 (-)Ensembl
Ensembl Acc Id: ENST00000432951   ⟹   ENSP00000410625
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,928,492 - 104,958,288 (-)Ensembl
Ensembl Acc Id: ENST00000433540   ⟹   ENSP00000395550
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,928,300 - 104,958,319 (-)Ensembl
Ensembl Acc Id: ENST00000437220   ⟹   ENSP00000391377
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,889,033 - 104,928,202 (-)Ensembl
Ensembl Acc Id: ENST00000449866   ⟹   ENSP00000414526
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,928,244 - 104,958,744 (-)Ensembl
Ensembl Acc Id: ENST00000549713
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12104,804,975 - 104,834,179 (-)Ensembl
RefSeq Acc Id: NM_001352169   ⟹   NP_001339098
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,746 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001352170   ⟹   NP_001339099
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001352171   ⟹   NP_001339100
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001352172   ⟹   NP_001339101
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387125   ⟹   NP_001374054
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,746 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387126   ⟹   NP_001374055
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,746 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387127   ⟹   NP_001374056
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387128   ⟹   NP_001374057
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,746 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387129   ⟹   NP_001374058
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387130   ⟹   NP_001374059
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387131   ⟹   NP_001374060
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,863,846 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,825,463 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387132   ⟹   NP_001374061
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,863,846 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,825,463 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001387133   ⟹   NP_001374062
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,863,846 - 104,958,290 (-)NCBI
T2T-CHM13v2.012104,825,463 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: NM_032148   ⟹   NP_115524
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,290 (-)NCBI
GRCh3712105,196,331 - 105,352,476 (-)NCBI
Build 3612103,722,491 - 103,846,562 (-)NCBI Archive
Celera12104,861,914 - 104,987,145 (-)RGD
HuRef12102,256,271 - 102,381,704 (-)ENTREZGENE
CHM1_112105,163,071 - 105,288,259 (-)NCBI
T2T-CHM13v2.012104,763,412 - 104,919,903 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005269179   ⟹   XP_005269236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,954,989 (-)NCBI
GRCh3712105,196,331 - 105,352,476 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538811   ⟹   XP_011537113
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,944,847 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011538813   ⟹   XP_011537115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,904,585 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020013   ⟹   XP_016875502
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,745 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017020016   ⟹   XP_016875505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,928,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047429648   ⟹   XP_047285604
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,801,801 - 104,958,746 (-)NCBI
RefSeq Acc Id: XM_047429649   ⟹   XP_047285605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,834,091 - 104,958,290 (-)NCBI
RefSeq Acc Id: XM_047429650   ⟹   XP_047285606
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,863,846 - 104,958,290 (-)NCBI
RefSeq Acc Id: XM_054373422   ⟹   XP_054229397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,763,412 - 104,920,359 (-)NCBI
RefSeq Acc Id: XM_054373423   ⟹   XP_054229398
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,763,412 - 104,920,358 (-)NCBI
RefSeq Acc Id: XM_054373424   ⟹   XP_054229399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,763,412 - 104,916,606 (-)NCBI
RefSeq Acc Id: XM_054373425   ⟹   XP_054229400
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,763,412 - 104,906,464 (-)NCBI
RefSeq Acc Id: XM_054373426   ⟹   XP_054229401
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,795,702 - 104,919,903 (-)NCBI
RefSeq Acc Id: XM_054373427   ⟹   XP_054229402
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,826,548 - 104,919,903 (-)NCBI
RefSeq Acc Id: XM_054373428   ⟹   XP_054229403
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,763,412 - 104,889,667 (-)NCBI
RefSeq Acc Id: XM_054373429   ⟹   XP_054229404
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,763,412 - 104,865,924 (-)NCBI
RefSeq Acc Id: XM_054373430   ⟹   XP_054229405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.012104,763,412 - 104,866,202 (-)NCBI
1 to 30 of 41 rows
Protein RefSeqs NP_001339098 (Get FASTA)   NCBI Sequence Viewer  
  NP_001339099 (Get FASTA)   NCBI Sequence Viewer  
  NP_001339100 (Get FASTA)   NCBI Sequence Viewer  
  NP_001339101 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374054 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374055 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374056 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374057 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374058 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374059 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374060 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374061 (Get FASTA)   NCBI Sequence Viewer  
  NP_001374062 (Get FASTA)   NCBI Sequence Viewer  
  NP_115524 (Get FASTA)   NCBI Sequence Viewer  
  XP_005269236 (Get FASTA)   NCBI Sequence Viewer  
  XP_011537113 (Get FASTA)   NCBI Sequence Viewer  
  XP_011537115 (Get FASTA)   NCBI Sequence Viewer  
  XP_016875502 (Get FASTA)   NCBI Sequence Viewer  
  XP_016875505 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285604 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285605 (Get FASTA)   NCBI Sequence Viewer  
  XP_047285606 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229397 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229398 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229399 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229400 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229401 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229402 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229403 (Get FASTA)   NCBI Sequence Viewer  
  XP_054229404 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 41 rows
1 to 5 of 40 rows
1 to 5 of 40 rows
RefSeq Acc Id: NP_115524   ⟸   NM_032148
- Peptide Label: isoform a
- UniProtKB: Q3KP68 (UniProtKB/Swiss-Prot),   Q9H0E5 (UniProtKB/Swiss-Prot),   Q96JW4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_005269236   ⟸   XM_005269179
- Peptide Label: isoform X1
- UniProtKB: Q3KP68 (UniProtKB/Swiss-Prot),   Q9H0E5 (UniProtKB/Swiss-Prot),   Q96JW4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011537113   ⟸   XM_011538811
- Peptide Label: isoform X1
- UniProtKB: Q3KP68 (UniProtKB/Swiss-Prot),   Q9H0E5 (UniProtKB/Swiss-Prot),   Q96JW4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011537115   ⟸   XM_011538813
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_016875502   ⟸   XM_017020013
- Peptide Label: isoform X1
- UniProtKB: Q3KP68 (UniProtKB/Swiss-Prot),   Q9H0E5 (UniProtKB/Swiss-Prot),   Q96JW4 (UniProtKB/Swiss-Prot)
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-Q96JW4-F1-model_v2 AlphaFold Q96JW4 1-573 view protein structure

RGD ID:7225243
Promoter ID:EPDNEW_H18367
Type:initiation region
Name:SLC41A2_1
Description:solute carrier family 41 member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3812104,958,698 - 104,958,758EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
COSMIC SLC41A2 COSMIC
Ensembl Genes ENSG00000136052 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000258538 ENTREZGENE
  ENST00000258538.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.357.20 UniProtKB/Swiss-Prot
GTEx ENSG00000136052 GTEx
HGNC ID HGNC:31045 ENTREZGENE
Human Proteome Map SLC41A2 Human Proteome Map
InterPro SLC41_membr_dom UniProtKB/Swiss-Prot
  SLC41_membr_dom_sf UniProtKB/Swiss-Prot
  SLC41A1-3 UniProtKB/Swiss-Prot
KEGG Report hsa:84102 UniProtKB/Swiss-Prot
NCBI Gene 84102 ENTREZGENE
OMIM 610802 OMIM
PANTHER PTHR16228 UniProtKB/Swiss-Prot
  SOLUTE CARRIER FAMILY 41 MEMBER 2 UniProtKB/Swiss-Prot
Pfam MgtE UniProtKB/Swiss-Prot
PharmGKB PA134931432 PharmGKB
Superfamily-SCOP SSF161093 UniProtKB/Swiss-Prot
UniProt C9J2P6_HUMAN UniProtKB/TrEMBL
  C9JA64_HUMAN UniProtKB/TrEMBL
  C9JCR2_HUMAN UniProtKB/TrEMBL
  C9JDQ2_HUMAN UniProtKB/TrEMBL
  C9JIL4_HUMAN UniProtKB/TrEMBL
  C9JKF2_HUMAN UniProtKB/TrEMBL
  C9JYJ7_HUMAN UniProtKB/TrEMBL
  H7BZT9_HUMAN UniProtKB/TrEMBL
  Q3KP68 ENTREZGENE
  Q96JW4 ENTREZGENE
  Q9H0E5 ENTREZGENE
  S41A2_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q3KP68 UniProtKB/Swiss-Prot
  Q9H0E5 UniProtKB/Swiss-Prot
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC41A2  solute carrier family 41 member 2    solute carrier family 41 (magnesium transporter), member 2  Symbol and/or name change 5135510 APPROVED
2013-07-23 SLC41A2  solute carrier family 41 (magnesium transporter), member 2    solute carrier family 41, member 2  Symbol and/or name change 5135510 APPROVED