Btbd9 (BTB domain containing 9) - Rat Genome Database

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Gene: Btbd9 (BTB domain containing 9) Mus musculus
Analyze
Symbol: Btbd9
Name: BTB domain containing 9
RGD ID: 1315894
MGI Page MGI
Description: Involved in modulation of chemical synaptic transmission. Acts upstream of or within several processes, including circadian sleep/wake cycle, non-REM sleep; long-term memory; and multicellular organismal-level iron ion homeostasis. Is active in glutamatergic synapse. Is expressed in several structures, including early conceptus; genitourinary system; liver; retina nuclear layer; and telencephalon. Used to study restless legs syndrome. Orthologous to human BTBD9 (BTB domain containing 9).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700023F20Rik; 4930402L05; AI464421; BTB (POZ) domain containing 9; BTB/POZ domain-containing protein 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391730,434,498 - 30,801,595 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1730,434,498 - 30,795,462 (-)EnsemblGRCm39 Ensembl
GRCm381730,215,524 - 30,582,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1730,215,524 - 30,576,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv371730,352,469 - 30,713,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361729,947,113 - 30,257,377 (-)NCBIMGSCv36mm8
Celera1730,749,867 - 30,867,988 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8858346   PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:14610273   PMID:15226823   PMID:15368895   PMID:15489334   PMID:15618518  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:18287559   PMID:18363860   PMID:18799693   PMID:20412781   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22536397   PMID:22678064  
PMID:24194600   PMID:24642863   PMID:27507650   PMID:27626380   PMID:28671696   PMID:28706196   PMID:31146259   PMID:31444227   PMID:31704978   PMID:31715135   PMID:32325033   PMID:32446853  
PMID:32468214   PMID:34321999   PMID:36244636   PMID:38355793  


Genomics

Comparative Map Data
Btbd9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391730,434,498 - 30,801,595 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1730,434,498 - 30,795,462 (-)EnsemblGRCm39 Ensembl
GRCm381730,215,524 - 30,582,621 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1730,215,524 - 30,576,488 (-)EnsemblGRCm38mm10GRCm38
MGSCv371730,352,469 - 30,713,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361729,947,113 - 30,257,377 (-)NCBIMGSCv36mm8
Celera1730,749,867 - 30,867,988 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1715.62NCBI
BTBD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38638,168,451 - 38,639,929 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl638,168,451 - 38,640,148 (-)EnsemblGRCh38hg38GRCh38
GRCh37638,136,227 - 38,607,705 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36638,244,205 - 38,715,902 (-)NCBINCBI36Build 36hg18NCBI36
Build 34638,250,710 - 38,671,821NCBI
Celera639,689,759 - 40,161,407 (-)NCBICelera
Cytogenetic Map6p21.2NCBI
HuRef637,854,470 - 38,325,833 (-)NCBIHuRef
CHM1_1638,138,017 - 38,609,979 (-)NCBICHM1_1
T2T-CHM13v2.0637,993,123 - 38,464,464 (-)NCBIT2T-CHM13v2.0
Btbd9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8208,287,813 - 8,645,437 (-)NCBIGRCr8
mRatBN7.2208,286,337 - 8,645,567 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl208,288,711 - 8,643,960 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx208,982,360 - 9,332,398 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0208,343,517 - 8,693,569 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0208,818,009 - 9,168,670 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0208,899,286 - 9,253,936 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl208,901,931 - 9,249,820 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02011,088,163 - 11,441,998 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4208,746,092 - 8,839,817 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera209,819,356 - 10,167,645 (-)NCBICelera
Cytogenetic Map20p12NCBI
Btbd9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554374,765,234 - 5,145,033 (+)NCBIChiLan1.0ChiLan1.0
BTBD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2552,640,689 - 53,124,518 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1648,510,618 - 48,989,038 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0637,733,575 - 38,211,857 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1638,922,390 - 39,398,705 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl638,928,879 - 39,358,424 (-)Ensemblpanpan1.1panPan2
BTBD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1127,154,805 - 7,564,050 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl127,154,925 - 7,564,017 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha127,170,424 - 7,579,982 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0127,618,782 - 8,028,837 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl127,616,878 - 8,028,824 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1127,157,513 - 7,567,307 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0127,236,256 - 7,644,750 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0127,340,314 - 7,750,362 (-)NCBIUU_Cfam_GSD_1.0
Btbd9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494642,603,445 - 43,006,843 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647620,953,347 - 21,351,255 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647620,953,377 - 21,351,925 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl733,720,014 - 34,124,458 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1733,723,077 - 34,122,673 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2738,947,942 - 39,127,275 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BTBD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11733,501,404 - 33,969,562 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604438,125,561 - 38,604,297 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btbd9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475419,616,547 - 20,011,989 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475419,562,532 - 20,014,323 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Btbd9
12207 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4577
Count of miRNA genes:818
Interacting mature miRNAs:1117
Transcripts:ENSMUST00000079924, ENSMUST00000168787
Prediction methods:Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10045977Tir9_mtrypanosome infection response 9 (mouse)Not determined172787811943885114Mouse
1302038Radpf1_mradiation pulmonary fibrosis 1 (mouse)Not determined171683545533819843Mouse
1300890Bhr3_mbronchial hyperresponsiveness 3 (mouse)Not determined17397489048866091Mouse
12904013Cfq12_mconditioned fear QTL 12 (mouse)172682878130664955Mouse
11075105Modc1_mmodifier of Odc1 (mouse)172771579245622654Mouse
1300995Fembrs4_mfemur breaking strength 4 (mouse)Not determined171506165249061760Mouse
15039348Nmrs37_mNAFLD-associated magnetic resonance shift 37 (mouse)172781520961815209Mouse
1302152Skull25_mskull morphology 25 (mouse)Not determined171681972150819843Mouse
1302028Asbb3_mautoimmune susceptibility in C57BL/6J and BALB/c 3 (mouse)Not determined171087811944878219Mouse
15039354Nmrs36_mNAFLD-associated magnetic resonance shift 36 (mouse)171914502553145025Mouse
4141215Mnic1_mmacronutrient intake, carbohydrate 1 (mouse)Not determined485475245670266Mouse
1300787Cd8mts5_mCD8 memory T cell subset 5 (mouse)Not determined17858491442585149Mouse
13524847Asrq8a_macoustic startle response 8a (mouse)171264696146646961Mouse
1300914Pcir4_mperiosteal circumference 4 (mouse)Not determined171506165249061760Mouse
13452396Leusq3_mleucocytosis susceptibility QTL 3 (mouse)171746220851462345Mouse
13452399Leusq6_mleucocytosis susceptibility QTL 6 (mouse)171746220851462345Mouse
1300535Char3_mP. chabaudi malaria resistance QTL 3 (mouse)Not determined171746220851462345Mouse
1302070Tbbmd7_mtotal body bone mineral density 7 (mouse)Not determined171506165249061760Mouse
10412214Sxbq3_mSGC/Knj cross B6 QTL 3 (mouse)Not determined171746220851462345Mouse
10412083Sm2_msusceptibility to Schistosoma mansoni infection 2 (mouse)Not determined171702994351030078Mouse
10412204Bbaa29_mB.burgdorferi-associated arthritis 29 (mouse)Not determined172605118560051352Mouse
10043949Pbft7_mpercent body fat 7 (mouse)Not determined17689393640893936Mouse
4141067Hbnr2_mHeligmosomoides bakeri nematode resistance 2 (mouse)Not determined1188597145886119Mouse
12904946Tammq8_mtibialis anterior muscle mass QTL 8 (mouse)171245178746451787Mouse
10412198Sst5_msusceptibility to tuberculosis 5 (mouse)Not determined172507658355712970Mouse
4142342Lfnq4_mlung function QTL 4 (mouse)Not determined1120648439364059Mouse
10412196Bbaa28_mB.burgdorferi-associated arthritis 28 (mouse)Not determined172558491443976235Mouse
1301935Skull24_mskull morphology 24 (mouse)Not determined17858491442585149Mouse
13524851Asrq8_macoustic startle response 8 (mouse)17131030170Mouse
1301331Lbw1_mlupus NZB x NZW 1 (mouse)Not determined171841835752420983Mouse
1301840Ssial4_msusceptibility to sialadenitiss 4 (mouse)Not determined171817541252178214Mouse
1357789Kdnw3_mkidney weight 3 (mouse)Not determined17485475247885665Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
1300703Uvbi2_mUVB induced immunosuppression 2 (mouse)Not determined172862240662622654Mouse
11038694Pas19_mpulmonary adenoma susceptibility 19 (mouse)172971116434754437Mouse
1301056Pas2_mpulmonary adenoma susceptibility 2 (mouse)Not determined171842214152424327Mouse
1301454Eae5_msusceptibility to experimental allergic encephalomyelitis 5 (mouse)Not determined172461275058612864Mouse
14747010Mancz14_mmandible centroid size 14 (mouse)171199818445998184Mouse
1302005Loco2_mlocomotor activity 2 (mouse)Not determined172688497260885114Mouse
4141272Tfv1_mtotal food volume 1 (mouse)Not determined485475265637357Mouse
1300602Eye2_meye weight 2 (mouse)Not determined172650533741105037Mouse
10412276Leci2_mleukocyte endothelial cell interactions 2 (mouse)Not determined17334817537348299Mouse
1302140Wta4_mweight adult 4 (mouse)Not determined171681972150819843Mouse
1300706Alan1_malloantigen response 1 (mouse)Not determined17485475246469702Mouse
1558886Lgth9_mbody length 9 (mouse)Not determined171506165249061760Mouse
1558758Kcal2_mkilocalorie 2 (mouse)Not determined172640101252911704Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
11081168Tir7_mtrypanosome infection response 7 (mouse)171412337248123496Mouse
1300589Myaa2_mmodifier of Yaa 2 (mouse)Not determined173013255564132666Mouse

Markers in Region
D17Mit60  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381730,356,122 - 30,356,232UniSTSGRCm38
MGSCv371730,493,067 - 30,493,177UniSTSGRCm37
Celera1730,889,772 - 30,889,882UniSTS
Cytogenetic Map17B1UniSTS
cM Map1716.8UniSTS
Whitehead Genetic176.6UniSTS
Whitehead/MRC_RH17376.1UniSTS
UniSTS:237614  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381730,505,692 - 30,506,014UniSTSGRCm38
GRCm382167,481,643 - 167,481,966UniSTSGRCm38
MGSCv372167,307,143 - 167,307,466UniSTSGRCm37
MGSCv371730,642,637 - 30,642,959UniSTSGRCm37
Celera2173,423,599 - 173,423,922UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map2H3UniSTS
AI464421  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381730,217,671 - 30,217,808UniSTSGRCm38
MGSCv371730,354,616 - 30,354,753UniSTSGRCm37
Celera1730,752,014 - 30,752,151UniSTS
Cytogenetic Map17B1UniSTS
Whitehead/MRC_RH17369.28UniSTS
324M10-T7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381730,517,226 - 30,517,389UniSTSGRCm38
MGSCv371730,654,171 - 30,654,334UniSTSGRCm37
Cytogenetic Map17B1UniSTS
cM Map17 UniSTS
58205-T7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381730,541,296 - 30,541,511UniSTSGRCm38
MGSCv371730,678,241 - 30,678,456UniSTSGRCm37
Cytogenetic Map17B1UniSTS
cM Map17 UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_027060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_172618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006524096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011246395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030249696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC125544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK006275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB614864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000079924   ⟹   ENSMUSP00000078845
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,030 - 30,795,143 (-)Ensembl
GRCm38.p6 Ensembl1730,220,056 - 30,576,169 (-)Ensembl
Ensembl Acc Id: ENSMUST00000168787   ⟹   ENSMUSP00000127300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,434,498 - 30,795,462 (-)Ensembl
GRCm38.p6 Ensembl1730,215,524 - 30,576,488 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235187
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,436,515 - 30,511,306 (-)Ensembl
GRCm38.p6 Ensembl1730,217,541 - 30,292,332 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,582,779 - 30,585,044 (-)Ensembl
GRCm38.p6 Ensembl1730,363,805 - 30,366,070 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,320 - 30,633,749 (-)Ensembl
GRCm38.p6 Ensembl1730,220,346 - 30,414,775 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235431
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,324 - 30,633,718 (-)Ensembl
GRCm38.p6 Ensembl1730,220,350 - 30,414,744 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235555
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,515,928 - 30,665,114 (-)Ensembl
GRCm38.p6 Ensembl1730,296,954 - 30,446,140 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235587   ⟹   ENSMUSP00000157721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,074 - 30,795,236 (-)Ensembl
GRCm38.p6 Ensembl1730,220,100 - 30,576,262 (-)Ensembl
Ensembl Acc Id: ENSMUST00000235643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,324 - 30,632,137 (-)Ensembl
GRCm38.p6 Ensembl1730,220,350 - 30,413,163 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,527 - 30,710,684 (-)Ensembl
GRCm38.p6 Ensembl1730,220,553 - 30,491,710 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236233
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,678,503 - 30,795,171 (-)Ensembl
GRCm38.p6 Ensembl1730,459,529 - 30,576,197 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236430
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,485,370 - 30,732,593 (-)Ensembl
GRCm38.p6 Ensembl1730,266,396 - 30,513,619 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236584   ⟹   ENSMUSP00000157702
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,583,523 - 30,795,183 (-)Ensembl
GRCm38.p6 Ensembl1730,364,549 - 30,576,209 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236799   ⟹   ENSMUSP00000157534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,728,448 - 30,790,804 (-)Ensembl
GRCm38.p6 Ensembl1730,509,474 - 30,571,830 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236825   ⟹   ENSMUSP00000157736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,743,800 - 30,795,184 (-)Ensembl
GRCm38.p6 Ensembl1730,524,826 - 30,576,210 (-)Ensembl
Ensembl Acc Id: ENSMUST00000236910
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,732,450 - 30,795,233 (-)Ensembl
GRCm38.p6 Ensembl1730,513,476 - 30,576,259 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237013
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,675,463 - 30,795,143 (-)Ensembl
GRCm38.p6 Ensembl1730,456,489 - 30,576,169 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237037   ⟹   ENSMUSP00000157719
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,073 - 30,795,423 (-)Ensembl
GRCm38.p6 Ensembl1730,220,099 - 30,576,449 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237048   ⟹   ENSMUSP00000157449
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,323 - 30,790,820 (-)Ensembl
GRCm38.p6 Ensembl1730,220,349 - 30,571,846 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237078
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,334 - 30,633,712 (-)Ensembl
GRCm38.p6 Ensembl1730,220,360 - 30,414,738 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237164   ⟹   ENSMUSP00000157439
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,308 - 30,746,325 (-)Ensembl
GRCm38.p6 Ensembl1730,220,334 - 30,527,351 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237635
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,518,562 - 30,519,010 (-)Ensembl
GRCm38.p6 Ensembl1730,299,588 - 30,300,036 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237675
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,518,542 - 30,553,930 (-)Ensembl
GRCm38.p6 Ensembl1730,299,568 - 30,334,956 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237732   ⟹   ENSMUSP00000158394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,439,315 - 30,732,649 (-)Ensembl
GRCm38.p6 Ensembl1730,220,341 - 30,513,675 (-)Ensembl
Ensembl Acc Id: ENSMUST00000237825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1730,695,832 - 30,743,877 (-)Ensembl
GRCm38.p6 Ensembl1730,476,858 - 30,524,903 (-)Ensembl
RefSeq Acc Id: NM_027060   ⟹   NP_081336
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,434,498 - 30,795,261 (-)NCBI
GRCm381730,215,524 - 30,576,287 (-)NCBI
MGSCv371730,352,469 - 30,713,232 (-)RGD
Celera1730,749,867 - 30,867,985 (-)ENTREZGENE
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_172618   ⟹   NP_766206
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,434,498 - 30,795,261 (-)NCBI
GRCm381730,215,524 - 30,576,287 (-)NCBI
MGSCv371730,352,469 - 30,713,232 (-)RGD
Celera1730,749,867 - 30,867,985 (-)ENTREZGENE
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006524094   ⟹   XP_006524157
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,434,500 - 30,801,595 (-)NCBI
GRCm381730,215,526 - 30,582,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524095   ⟹   XP_006524158
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,690,596 - 30,801,595 (-)NCBI
GRCm381730,471,621 - 30,582,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006524096   ⟹   XP_006524159
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,727,277 - 30,801,595 (-)NCBI
GRCm381730,508,303 - 30,582,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011246395   ⟹   XP_011244697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,434,500 - 30,801,595 (-)NCBI
GRCm381730,215,526 - 30,582,621 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249696   ⟹   XP_030105556
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,434,500 - 30,791,176 (-)NCBI
GRCm381730,215,526 - 30,572,203 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160523   ⟹   XP_036016416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,728,507 - 30,801,595 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160525   ⟹   XP_036016418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391730,727,277 - 30,791,188 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_081336 (Get FASTA)   NCBI Sequence Viewer  
  NP_766206 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524157 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524158 (Get FASTA)   NCBI Sequence Viewer  
  XP_006524159 (Get FASTA)   NCBI Sequence Viewer  
  XP_011244697 (Get FASTA)   NCBI Sequence Viewer  
  XP_030105556 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016416 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016418 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH57897 (Get FASTA)   NCBI Sequence Viewer  
  AAH63095 (Get FASTA)   NCBI Sequence Viewer  
  BAB24498 (Get FASTA)   NCBI Sequence Viewer  
  BAC26521 (Get FASTA)   NCBI Sequence Viewer  
  BAC35088 (Get FASTA)   NCBI Sequence Viewer  
  BAC40032 (Get FASTA)   NCBI Sequence Viewer  
  BAD32563 (Get FASTA)   NCBI Sequence Viewer  
  BAE32290 (Get FASTA)   NCBI Sequence Viewer  
  BAE36045 (Get FASTA)   NCBI Sequence Viewer  
  EDL22639 (Get FASTA)   NCBI Sequence Viewer  
  EDL22640 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000078845
  ENSMUSP00000078845.6
  ENSMUSP00000127300
  ENSMUSP00000127300.2
  ENSMUSP00000157439.2
  ENSMUSP00000157449
  ENSMUSP00000157449.2
  ENSMUSP00000157534
  ENSMUSP00000157534.2
  ENSMUSP00000157702.2
  ENSMUSP00000157719.2
  ENSMUSP00000157721.2
  ENSMUSP00000157736.2
  ENSMUSP00000158394.2
GenBank Protein Q8C726 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_766206   ⟸   NM_172618
- UniProtKB: Q8C726 (UniProtKB/Swiss-Prot),   Q3U4Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_081336   ⟸   NM_027060
- UniProtKB: Q8C726 (UniProtKB/Swiss-Prot),   Q3U4Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524157   ⟸   XM_006524094
- Peptide Label: isoform X1
- UniProtKB: Q3U4Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524158   ⟸   XM_006524095
- Peptide Label: isoform X4
- UniProtKB: Q8C2V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006524159   ⟸   XM_006524096
- Peptide Label: isoform X5
- UniProtKB: A0A494B989 (UniProtKB/TrEMBL),   Q8C2V5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011244697   ⟸   XM_011246395
- Peptide Label: isoform X1
- UniProtKB: Q3U4Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030105556   ⟸   XM_030249696
- Peptide Label: isoform X2
- UniProtKB: Q8C726 (UniProtKB/Swiss-Prot),   Q3U4Z0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000157449   ⟸   ENSMUST00000237048
Ensembl Acc Id: ENSMUSP00000157719   ⟸   ENSMUST00000237037
Ensembl Acc Id: ENSMUSP00000157439   ⟸   ENSMUST00000237164
Ensembl Acc Id: ENSMUSP00000158394   ⟸   ENSMUST00000237732
Ensembl Acc Id: ENSMUSP00000078845   ⟸   ENSMUST00000079924
Ensembl Acc Id: ENSMUSP00000157702   ⟸   ENSMUST00000236584
Ensembl Acc Id: ENSMUSP00000157736   ⟸   ENSMUST00000236825
Ensembl Acc Id: ENSMUSP00000157534   ⟸   ENSMUST00000236799
Ensembl Acc Id: ENSMUSP00000127300   ⟸   ENSMUST00000168787
Ensembl Acc Id: ENSMUSP00000157721   ⟸   ENSMUST00000235587
RefSeq Acc Id: XP_036016418   ⟸   XM_036160525
- Peptide Label: isoform X5
- UniProtKB: A0A494B989 (UniProtKB/TrEMBL),   Q8C2V5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036016416   ⟸   XM_036160523
- Peptide Label: isoform X3
- UniProtKB: Q8C2V5 (UniProtKB/TrEMBL)
Protein Domains
BACK   BTB   F5/8 type C

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8C726-F1-model_v2 AlphaFold Q8C726 1-612 view protein structure

Promoters
RGD ID:13675442
Promoter ID:EPDNEW_M21870
Type:initiation region
Name:Btbd9_1
Description:Mus musculus BTB domain containing 9 , transcript variant 2,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381730,576,203 - 30,576,263EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916625 AgrOrtholog
Ensembl Genes ENSMUSG00000062202 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000079924 ENTREZGENE
  ENSMUST00000079924.8 UniProtKB/Swiss-Prot
  ENSMUST00000168787 ENTREZGENE
  ENSMUST00000168787.8 UniProtKB/Swiss-Prot
  ENSMUST00000235587.2 UniProtKB/TrEMBL
  ENSMUST00000236584.2 UniProtKB/TrEMBL
  ENSMUST00000236799 ENTREZGENE
  ENSMUST00000236799.2 UniProtKB/TrEMBL
  ENSMUST00000236825.2 UniProtKB/TrEMBL
  ENSMUST00000237037.2 UniProtKB/TrEMBL
  ENSMUST00000237048 ENTREZGENE
  ENSMUST00000237048.2 UniProtKB/Swiss-Prot
  ENSMUST00000237164.2 UniProtKB/TrEMBL
  ENSMUST00000237732.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BACK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTB_POZ_domain_cont_9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTBD9_BACK-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FA58C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:224671 UniProtKB/Swiss-Prot
MGD MGI:1916625 ENTREZGENE
NCBI Gene Btbd9 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 9 UniProtKB/Swiss-Prot
  BTB/POZ DOMAIN-CONTAINING PROTEIN 9 UniProtKB/Swiss-Prot
  BTB/POZ DOMAIN-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
  BTB/POZ DOMAIN-CONTAINING PROTEIN 9 UniProtKB/TrEMBL
Pfam BACK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Btbd9 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BACK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  BTB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54695 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B946_MOUSE UniProtKB/TrEMBL
  A0A494B989 ENTREZGENE, UniProtKB/TrEMBL
  A0A494B9M3_MOUSE UniProtKB/TrEMBL
  A0A494B9P6_MOUSE UniProtKB/TrEMBL
  A0A494B9Q1_MOUSE UniProtKB/TrEMBL
  A0A494B9R7_MOUSE UniProtKB/TrEMBL
  A0A494BBB8_MOUSE UniProtKB/TrEMBL
  BTBD9_MOUSE UniProtKB/Swiss-Prot
  Q3TUC6_MOUSE UniProtKB/TrEMBL
  Q3U4Z0 ENTREZGENE, UniProtKB/TrEMBL
  Q69Z81_MOUSE UniProtKB/TrEMBL
  Q6P541_MOUSE UniProtKB/TrEMBL
  Q8C2V5 ENTREZGENE, UniProtKB/TrEMBL
  Q8C726 ENTREZGENE
  Q8CDU2_MOUSE UniProtKB/TrEMBL
  Q9DA12_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Btbd9  BTB domain containing 9  1700023F20Rik  RIKEN cDNA 1700023F20 gene  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 1700023F20Rik  RIKEN cDNA 1700023F20 gene  Btbd9  BTB domain containing 9  Symbol and/or name change 5135510 APPROVED
2023-07-04 Btbd9  BTB domain containing 9  Btbd9  BTB (POZ) domain containing 9  Symbol and/or name change 5135510 APPROVED