Glmn (glomulin, FKBP associated protein) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Glmn (glomulin, FKBP associated protein) Mus musculus
Analyze
Symbol: Glmn
Name: glomulin, FKBP associated protein
RGD ID: 1315585
MGI Page MGI
Description: Predicted to enable hepatocyte growth factor receptor binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase inhibitor activity. Acts upstream of or within circulatory system development and neural tube closure. Predicted to be part of Cul2-RING ubiquitin ligase complex; Cul3-RING ubiquitin ligase complex; and Cul4A-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Is expressed in several structures, including arterial system; respiratory system; skeleton; skin; and urinary system. Human ortholog(s) of this gene implicated in arteriovenous malformation; glomangioma; and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9330160J16Rik; FAP; Fap48; Fap68; FK506-binding protein-associated protein; FKBP-associated protein; glomulin; MGC6885
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,696,828 - 107,745,754 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,696,833 - 107,745,754 (-)EnsemblGRCm39 Ensembl
GRCm385107,548,962 - 107,597,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,548,967 - 107,597,888 (-)EnsemblGRCm38mm10GRCm38
MGSCv375107,977,986 - 108,026,907 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,789,326 - 107,837,877 (-)NCBIMGSCv36mm8
Celera5104,662,262 - 104,710,248 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map552.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMousearteriovenous malformation  ISORGD:13155841598992glomuvenous malformationsRGD 
GlmnMouseglomus tumor  ISORGD:13155841598992glomuvenous malformationsRGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMouseBlue Rubber Bleb Nevus Syndrome  ISORGD:13155848554872ClinVar Annotator: match by term: Blue rubber bleb nevusClinVar 
GlmnMouseDiamond-Blackfan anemia  ISORGD:13155848554872ClinVar Annotator: match by term: Diamond-Blackfan anemiaClinVarPMID:28492532
GlmnMousefamilial glomangioma  ISORGD:13155848554872ClinVar Annotator: match by term: Familial glomangiomaClinVarPMID:11175297|PMID:11845407|PMID:15689436|PMID:23801931|PMID:24033266|PMID:25741868|PMID:28492532|PMID:30460983|PMID:31483481
GlmnMousegenetic disease  ISORGD:13155848554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:11175297|PMID:11845407|PMID:23801931|PMID:25741868|PMID:30460983
GlmnMouseglomangioma  ISORGD:13155848554872ClinVar Annotator: match by term: Glomuvenous malformation | ClinVar Annotator: match by term: Glomuvenous malformationsClinVarPMID:11175297|PMID:11845407|PMID:15689436|PMID:23375657|PMID:23801931|PMID:24033266|PMID:25741868|PMID:28492532|PMID:30460983|PMID:31483481
GlmnMousesevere congenital neutropenia 2  ISORGD:13155848554872ClinVar Annotator: match by term: Neutropenia, severe congenital, 2, autosomal dominantClinVarPMID:28492532
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMouseglomangioma  ISORGD:131558411554173CTD Direct Evidence: marker/mechanismCTD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMouseglomangioma  ISORGD:13155847240710 OMIM 

1 to 20 of 41 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMouse(-)-epigallocatechin 3-gallate multiple interactionsISORGD:13155846480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of GLMN mRNACTDPMID:22079256
GlmnMouse1,2-dichloroethane affects expressionEXP 6480464ethylene dichloride affects the expression of GLMN mRNACTDPMID:28960355
GlmnMouse17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of GLMN mRNACTDPMID:39298647
GlmnMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of GLMN mRNACTDPMID:21570461
GlmnMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13155846480464Tetrachlorodibenzodioxin affects the expression of GLMN mRNACTDPMID:22574217
GlmnMouse2-palmitoylglycerol increases expressionISORGD:131558464804642-palmitoylglycerol results in increased expression of GLMN mRNACTDPMID:37199045
GlmnMouse3-chloropropane-1,2-diol increases expressionISORGD:15886006480464alpha-Chlorohydrin results in increased expression of GLMN proteinCTDPMID:34915118
GlmnMouse6-propyl-2-thiouracil increases expressionISORGD:15886006480464Propylthiouracil results in increased expression of GLMN mRNACTDPMID:24780913
GlmnMouseaflatoxin M1 decreases expressionISORGD:13155846480464Aflatoxin M1 results in decreased expression of GLMN mRNACTDPMID:30928695
GlmnMousebenzo[a]pyrene affects methylationISORGD:13155846480464Benzo(a)pyrene affects the methylation of GLMN intronCTDPMID:30157460
GlmnMousebisphenol A increases expressionISORGD:15886006480464bisphenol A results in increased expression of GLMN mRNACTDPMID:25181051
GlmnMousebisphenol A decreases methylationISORGD:13155846480464bisphenol A results in decreased methylation of GLMN geneCTDPMID:31601247
GlmnMousebisphenol A increases expressionISORGD:13155846480464bisphenol A results in increased expression of GLMN mRNACTDPMID:33670352
GlmnMousebisphenol A decreases expressionISORGD:13155846480464bisphenol A results in decreased expression of GLMN mRNACTDPMID:29275510
GlmnMouseC60 fullerene increases expressionISORGD:15886006480464fullerene C60 results in increased expression of GLMN mRNACTDPMID:19167457
GlmnMousecisplatin decreases expressionISORGD:13155846480464Cisplatin results in decreased expression of GLMN mRNACTDPMID:27392435
GlmnMousecopper(II) sulfate decreases expressionISORGD:13155846480464Copper Sulfate results in decreased expression of GLMN mRNACTDPMID:19549813
GlmnMousecoumestrol increases expressionISORGD:13155846480464Coumestrol results in increased expression of GLMN mRNACTDPMID:19167446
GlmnMousecrocidolite asbestos decreases expressionEXP 6480464Asbestos, Crocidolite results in decreased expression of GLMN mRNACTDPMID:29279043
GlmnMousecyclosporin A decreases expressionISORGD:13155846480464Cyclosporine results in decreased expression of GLMN mRNACTDPMID:27989131

1 to 20 of 41 rows

Biological Process
1 to 20 of 20 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMousecell surface receptor signaling pathway acts_upstream_of_or_withinISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMousecirculatory system development acts_upstream_of_or_withinIMPMGI:38176432290270 PMID:22405651MGIPMID:22405651
GlmnMouseepigenetic regulation of gene expression involved_inISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
GlmnMouseepigenetic regulation of gene expression involved_inISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000119
GlmnMousemuscle cell differentiation involved_inISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000119
GlmnMousemuscle cell differentiation involved_inISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
GlmnMousenegative regulation of cell population proliferation acts_upstream_of_or_withinISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMousenegative regulation of T cell proliferation involved_inISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
GlmnMousenegative regulation of T cell proliferation involved_inISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000119
GlmnMouseneural tube closure acts_upstream_of_or_withinIMPMGI:38176432290270 PMID:22405651MGIPMID:22405651
GlmnMousepositive regulation of cytokine production involved_inISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000119
GlmnMousepositive regulation of cytokine production involved_inISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
GlmnMousepositive regulation of interleukin-2 production acts_upstream_of_or_withinISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMousepositive regulation of interleukin-2 production involved_inISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
GlmnMousepositive regulation of interleukin-2 production involved_inISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000119
GlmnMousepositive regulation of phosphorylation involved_inISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000119
GlmnMousepositive regulation of phosphorylation involved_inISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
GlmnMouseregulation of proteasomal ubiquitin-dependent protein catabolic process acts_upstream_of_or_withinISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMousevasculogenesis involved_inISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000119
GlmnMousevasculogenesis involved_inISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
1 to 20 of 20 rows

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMouseCul2-RING ubiquitin ligase complex part_ofISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMouseCul3-RING ubiquitin ligase complex part_ofISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMouseCul4A-RING E3 ubiquitin ligase complex part_ofISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMousecullin-RING ubiquitin ligase complex part_ofISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMousecytoplasm is_active_inIBAPANTHER:PTN001035248|TAIR:locus:21848962290270 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMousehepatocyte growth factor receptor binding enablesISOUniProtKB:Q929902290270 GO_CentralGO_REF:0000008|GO_REF:0000119
GlmnMousehepatocyte growth factor receptor binding enablesISSUniProtKB:Q929902290270 UniProtGO_REF:0000024
GlmnMouseprotein binding enablesIPIUniProtKB:Q8VE732290270 PMID:12904573UniProtPMID:12904573
GlmnMousesignaling receptor binding enablesISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMouseubiquitin protein ligase binding enablesISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMouseubiquitin-protein transferase inhibitor activity enablesISOUniProtKB:Q929902290270 MGIGO_REF:0000008
GlmnMouseubiquitin-protein transferase inhibitor activity enablesIBAPANTHER:PTN001035248|UniProtKB:Q929902290270 GO_CentralGO_REF:0000033

1 to 20 of 31 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GlmnMouseabnormal chorioallantoic fusion  IEA 5509061 MGI 
GlmnMouseabnormal embryo development  IEA 5509061 MGI 
GlmnMouseabnormal embryo size  IEA 5509061 MGI 
GlmnMouseabnormal embryo turning  IEA 5509061 MGI 
GlmnMouseabnormal forebrain development  IEA 5509061 MGI 
GlmnMouseabnormal head mesenchyme morphology  IAGP 5509061 MGIPMID:22405651
GlmnMouseabnormal heart looping  IEA 5509061 MGI 
GlmnMouseabnormal heart morphology  IEA 5509061 MGI 
GlmnMouseabnormal hindbrain development  IEA 5509061 MGI 
GlmnMouseabnormal midbrain development  IEA 5509061 MGI 
GlmnMouseabnormal neural tube closure  IEA 5509061 MGI 
GlmnMouseabnormal neural tube morphology  IEA 5509061 MGI 
GlmnMouseabnormal pharyngeal arch morphology  IEA 5509061 MGI 
GlmnMouseabnormal somite shape  IEA 5509061 MGI 
GlmnMouseabnormal tail bud morphology  IEA 5509061 MGI 
GlmnMouseabnormal visceral yolk sac morphology  IEA 5509061 MGI 
GlmnMouseabnormal vitelline vasculature morphology  IEA 5509061 MGI 
GlmnMousebleb  IEA 5509061 MGI 
GlmnMousedelayed neural tube closure  IAGP 5509061 MGIPMID:22405651
GlmnMousedisorganized yolk sac vascular plexus  IAGP 5509061 MGIPMID:22405651
1 to 20 of 31 rows

#
Reference Title
Reference Citation
1. Mutations in a novel factor, glomulin, are responsible for glomuvenous malformations ("glomangiomas"). Brouillard P, etal., Am J Hum Genet. 2002 Apr;70(4):866-74. Epub 2002 Feb 13.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904573   PMID:14610273   PMID:15053987   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:16778019   PMID:17967808   PMID:18287559   PMID:18799693   PMID:21677750   PMID:21873635   PMID:22405651   PMID:24457600   PMID:25246571   PMID:29191979  
PMID:33905568   PMID:38355793  



Glmn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,696,828 - 107,745,754 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5107,696,833 - 107,745,754 (-)EnsemblGRCm39 Ensembl
GRCm385107,548,962 - 107,597,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,548,967 - 107,597,888 (-)EnsemblGRCm38mm10GRCm38
MGSCv375107,977,986 - 108,026,907 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365107,789,326 - 107,837,877 (-)NCBIMGSCv36mm8
Celera5104,662,262 - 104,710,248 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map552.23NCBI
GLMN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,246,402 - 92,370,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl192,246,402 - 92,298,987 (-)EnsemblGRCh38hg38GRCh38
GRCh37192,711,959 - 92,764,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,484,543 - 92,537,154 (-)NCBINCBI36Build 36hg18NCBI36
Celera190,958,376 - 91,010,996 (-)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef190,832,161 - 90,885,013 (-)NCBIHuRef
CHM1_1192,826,713 - 92,879,343 (-)NCBICHM1_1
T2T-CHM13v2.0192,091,304 - 92,215,749 (-)NCBIT2T-CHM13v2.0
Glmn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8142,332,052 - 2,375,366 (+)NCBIGRCr8
mRatBN7.2142,187,144 - 2,231,295 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl142,187,642 - 2,230,420 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx142,065,769 - 2,108,341 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0143,367,584 - 3,410,156 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0142,064,364 - 2,107,681 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0143,204,390 - 3,247,703 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,204,390 - 3,247,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,205,285 - 3,249,200 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,744,359 - 2,789,190 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,744,817 - 2,758,826 (+)NCBI
Celera142,207,607 - 2,249,016 (+)NCBICelera
Cytogenetic Map14p22NCBI
Glmn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,195,423 - 2,232,706 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554232,195,428 - 2,233,389 (+)NCBIChiLan1.0ChiLan1.0
GLMN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21134,722,953 - 134,778,663 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11133,877,611 - 133,933,453 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,907,342 - 94,963,052 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,646,499 - 93,701,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,646,499 - 93,701,430 (-)Ensemblpanpan1.1panPan2
GLMN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,631,186 - 56,678,397 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,644,456 - 56,678,399 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,330,330 - 59,378,033 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0657,008,353 - 57,056,901 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl657,021,936 - 57,056,089 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1656,688,187 - 56,736,571 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0656,666,816 - 56,715,030 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0657,127,272 - 57,175,646 (+)NCBIUU_Cfam_GSD_1.0
Glmn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,120,584 - 102,169,696 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365376,777,965 - 6,829,881 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365376,778,317 - 6,827,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLMN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,773,980 - 124,813,335 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,773,957 - 124,813,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,442,586 - 136,467,816 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLMN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12040,950,948 - 41,007,120 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2040,951,342 - 41,008,791 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603376,991,119 - 77,056,937 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Glmn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247425,434,588 - 5,477,647 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Glmn
2067 total Variants

Predicted Target Of
Summary Value
Count of predictions:753
Count of miRNA genes:409
Interacting mature miRNAs:485
Transcripts:ENSMUST00000078021, ENSMUST00000082121, ENSMUST00000100949, ENSMUST00000124140, ENSMUST00000124546, ENSMUST00000137939, ENSMUST00000143113, ENSMUST00000148505
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 59 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse

1 to 10 of 59 rows
AW227515  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385107,549,148 - 107,549,447UniSTSGRCm38
MGSCv375107,978,167 - 107,978,466UniSTSGRCm37
Celera5104,662,443 - 104,662,742UniSTS
Cytogenetic Map5E5UniSTS
Whitehead/MRC_RH51300.38UniSTS






1 to 19 of 19 rows
RefSeq Transcripts NM_001161738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001161739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_133248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006534800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011249410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017320694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001784631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC117574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC134411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ566083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY013339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ702896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 19 of 19 rows

Ensembl Acc Id: ENSMUST00000078021   ⟹   ENSMUSP00000077168
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,696,833 - 107,745,505 (-)Ensembl
GRCm38.p6 Ensembl5107,548,967 - 107,597,639 (-)Ensembl
Ensembl Acc Id: ENSMUST00000082121   ⟹   ENSMUSP00000080766
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,696,889 - 107,745,754 (-)Ensembl
GRCm38.p6 Ensembl5107,549,023 - 107,597,888 (-)Ensembl
Ensembl Acc Id: ENSMUST00000100949   ⟹   ENSMUSP00000098509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,696,835 - 107,745,443 (-)Ensembl
GRCm38.p6 Ensembl5107,548,969 - 107,597,577 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124140   ⟹   ENSMUSP00000123224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,723,187 - 107,745,412 (-)Ensembl
GRCm38.p6 Ensembl5107,575,321 - 107,597,546 (-)Ensembl
Ensembl Acc Id: ENSMUST00000124546   ⟹   ENSMUSP00000122129
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,696,890 - 107,745,410 (-)Ensembl
GRCm38.p6 Ensembl5107,549,024 - 107,597,544 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,696,888 - 107,699,276 (-)Ensembl
GRCm38.p6 Ensembl5107,549,022 - 107,551,410 (-)Ensembl
Ensembl Acc Id: ENSMUST00000143113
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,723,153 - 107,745,505 (-)Ensembl
GRCm38.p6 Ensembl5107,575,287 - 107,597,639 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5107,720,146 - 107,745,432 (-)Ensembl
GRCm38.p6 Ensembl5107,572,280 - 107,597,566 (-)Ensembl
RefSeq Acc Id: NM_001161738   ⟹   NP_001155210
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,833 - 107,745,754 (-)NCBI
GRCm385107,548,967 - 107,597,888 (-)ENTREZGENE
MGSCv375107,977,986 - 108,026,907 (-)RGD
Celera5104,662,262 - 104,710,248 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001161739   ⟹   NP_001155211
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,833 - 107,745,505 (-)NCBI
GRCm385107,548,967 - 107,597,639 (-)NCBI
MGSCv375107,977,986 - 108,026,907 (-)RGD
Celera5104,662,262 - 104,710,248 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_133248   ⟹   NP_573511
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,833 - 107,745,505 (-)NCBI
GRCm385107,548,967 - 107,597,639 (-)NCBI
MGSCv375107,977,986 - 108,026,907 (-)RGD
Celera5104,662,262 - 104,710,248 (-)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534800   ⟹   XP_006534863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,828 - 107,745,498 (-)NCBI
GRCm385107,548,962 - 107,597,546 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249410   ⟹   XP_011247712
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,828 - 107,745,507 (-)NCBI
GRCm385107,548,962 - 107,597,641 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017320694   ⟹   XP_017176183
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,828 - 107,745,401 (-)NCBI
GRCm385107,548,962 - 107,597,555 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030254179   ⟹   XP_030110039
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,828 - 107,745,500 (-)NCBI
GRCm385107,548,962 - 107,597,634 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001784631
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395107,696,834 - 107,745,507 (-)NCBI
GRCm385107,548,968 - 107,597,641 (-)NCBI
Sequence:
1 to 5 of 12 rows
1 to 5 of 12 rows
RefSeq Acc Id: NP_573511   ⟸   NM_133248
- Peptide Label: isoform a
- UniProtKB: Q99LB8 (UniProtKB/Swiss-Prot),   Q8BZM1 (UniProtKB/Swiss-Prot),   Q3TFR5 (UniProtKB/Swiss-Prot),   Q3TMW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155210   ⟸   NM_001161738
- Peptide Label: isoform a
- UniProtKB: Q99LB8 (UniProtKB/Swiss-Prot),   Q8BZM1 (UniProtKB/Swiss-Prot),   Q3TFR5 (UniProtKB/Swiss-Prot),   Q3TMW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001155211   ⟸   NM_001161739
- Peptide Label: isoform b
- UniProtKB: Q3T9A5 (UniProtKB/TrEMBL),   Q3TMW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006534863   ⟸   XM_006534800
- Peptide Label: isoform X1
- UniProtKB: Q99LB8 (UniProtKB/Swiss-Prot),   Q8BZM1 (UniProtKB/Swiss-Prot),   Q3TFR5 (UniProtKB/Swiss-Prot),   Q3TMW7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011247712   ⟸   XM_011249410
- Peptide Label: isoform X2
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-Q8BZM1-F1-model_v2 AlphaFold Q8BZM1 1-596 view protein structure

RGD ID:6887426
Promoter ID:EPDNEW_M7163
Type:multiple initiation site
Name:Glmn_1
Description:Mus musculus glomulin, FKBP associated protein , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385107,597,603 - 107,597,663EPDNEW
RGD ID:6837583
Promoter ID:MM_KWN:43244
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   ES_Cell,   Liver,   Spleen
Transcripts:NM_001161738,   NM_001161739,   NM_133248,   OTTMUST00000056837,   OTTMUST00000057491,   OTTMUST00000057506,   OTTMUST00000057507
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365108,026,536 - 108,027,036 (-)MPROMDB


1 to 26 of 26 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000029276 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000078021 ENTREZGENE
  ENSMUST00000078021.13 UniProtKB/Swiss-Prot
  ENSMUST00000082121 ENTREZGENE
  ENSMUST00000082121.9 UniProtKB/Swiss-Prot
  ENSMUST00000100949 ENTREZGENE
  ENSMUST00000124546 ENTREZGENE
InterPro Glomulin/ALF4 UniProtKB/Swiss-Prot
  YAP-bd/ALF4/Glomulin UniProtKB/Swiss-Prot
KEGG Report mmu:170823 UniProtKB/Swiss-Prot
MGD MGI:2141180 ENTREZGENE
NCBI Gene Glmn ENTREZGENE
PANTHER GLOMULIN UniProtKB/Swiss-Prot
  PTHR15430 UniProtKB/Swiss-Prot
Pfam Kinetochor_Ybp2 UniProtKB/Swiss-Prot
PhenoGen Glmn PhenoGen
UniProt D3Z0L3_MOUSE UniProtKB/TrEMBL
  D6RGR3_MOUSE UniProtKB/TrEMBL
  GLMN_MOUSE UniProtKB/Swiss-Prot
  Q3T9A5 ENTREZGENE, UniProtKB/TrEMBL
  Q3TFR5 ENTREZGENE
  Q3TMW7 ENTREZGENE, UniProtKB/TrEMBL
  Q8BZM1 ENTREZGENE
  Q99LB8 ENTREZGENE
UniProt Secondary Q3TFR5 UniProtKB/Swiss-Prot
  Q99LB8 UniProtKB/Swiss-Prot
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Glmn  glomulin, FKBP associated protein  AW227515  expressed sequence AW227515  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 AW227515  expressed sequence AW227515  Glmn  glomulin, FKBP associated protein  Symbol and/or name change 5135510 APPROVED