GLMN (glomulin, FKBP associated protein) - Rat Genome Database

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Gene: GLMN (glomulin, FKBP associated protein) Canis lupus familiaris
Analyze
Symbol: GLMN
Name: glomulin, FKBP associated protein
RGD ID: 12429436
Description: ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); circulatory system development (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH arteriovenous malformation (ortholog); Blue Rubber Bleb Nevus Syndrome (ortholog); glomus tumor (ortholog); FOUND IN cullin-RING ubiquitin ligase complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: glomulin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,631,186 - 56,678,397 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,644,456 - 56,678,399 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,330,330 - 59,378,033 (+)NCBI
ROS_Cfam_1.0657,008,353 - 57,056,901 (+)NCBI
UMICH_Zoey_3.1656,688,187 - 56,736,571 (+)NCBI
UNSW_CanFamBas_1.0656,666,816 - 56,715,030 (+)NCBI
UU_Cfam_GSD_1.0657,127,272 - 57,175,646 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Genomics

Comparative Map Data
GLMN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,631,186 - 56,678,397 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,644,456 - 56,678,399 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,330,330 - 59,378,033 (+)NCBI
ROS_Cfam_1.0657,008,353 - 57,056,901 (+)NCBI
UMICH_Zoey_3.1656,688,187 - 56,736,571 (+)NCBI
UNSW_CanFamBas_1.0656,666,816 - 56,715,030 (+)NCBI
UU_Cfam_GSD_1.0657,127,272 - 57,175,646 (+)NCBI
GLMN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl192,246,402 - 92,298,987 (-)EnsemblGRCh38hg38GRCh38
GRCh38192,245,786 - 92,441,936 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37192,711,959 - 92,764,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,484,543 - 92,537,154 (-)NCBINCBI36hg18NCBI36
Celera190,958,376 - 91,010,996 (-)NCBI
Cytogenetic Map1p22.1NCBI
HuRef190,832,161 - 90,885,013 (-)NCBIHuRef
CHM1_1192,826,713 - 92,879,343 (-)NCBICHM1_1
Glmn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,696,828 - 107,745,754 (-)NCBIGRCm39mm39
GRCm39 Ensembl5107,696,833 - 107,745,754 (-)Ensembl
GRCm385107,548,962 - 107,597,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,548,967 - 107,597,888 (-)EnsemblGRCm38mm10GRCm38
MGSCv375107,977,986 - 108,026,907 (-)NCBIGRCm37mm9NCBIm37
MGSCv365107,789,326 - 107,837,877 (-)NCBImm8
Celera5104,662,262 - 104,710,248 (-)NCBICelera
Cytogenetic Map5FNCBI
Glmn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,187,144 - 2,231,295 (+)NCBI
Rnor_6.0 Ensembl143,204,390 - 3,247,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0143,204,390 - 3,247,703 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0143,205,285 - 3,249,200 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,744,359 - 2,789,190 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1142,744,817 - 2,758,826 (+)NCBI
Celera142,207,607 - 2,249,016 (+)NCBICelera
Cytogenetic Map14p22NCBI
Glmn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,195,423 - 2,232,706 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554232,195,428 - 2,233,389 (+)NCBIChiLan1.0ChiLan1.0
GLMN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1193,646,499 - 93,701,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,646,499 - 93,701,430 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0194,907,342 - 94,963,052 (-)NCBIMhudiblu_PPA_v0panPan3
Glmn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,120,584 - 102,169,696 (-)NCBI
SpeTri2.0NW_0049365376,778,317 - 6,827,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLMN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,773,979 - 124,813,337 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,773,957 - 124,813,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,442,586 - 136,467,816 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLMN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12040,950,948 - 41,007,120 (+)NCBI
ChlSab1.1 Ensembl2040,951,342 - 41,008,791 (+)Ensembl
Vero_WHO_p1.0NW_02366603376,991,119 - 77,056,937 (-)NCBI
Glmn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247425,434,588 - 5,477,647 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 4 18 2 6 2 6 1 12 8 10 5
Low 1 1 4 4 4 5 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005621931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022420481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038480056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038541371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038605504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038670136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_537076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000032099   ⟹   ENSCAFP00000029892
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl656,644,456 - 56,678,399 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000063205   ⟹   ENSCAFP00000053804
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl656,644,456 - 56,678,399 (+)Ensembl
RefSeq Acc Id: XM_005621931   ⟹   XP_005621988
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1656,644,766 - 56,678,397 (+)NCBI
Dog10K_Boxer_Tasha659,343,917 - 59,377,312 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022420481   ⟹   XP_022276189
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1656,631,186 - 56,678,397 (+)NCBI
Dog10K_Boxer_Tasha659,330,330 - 59,378,033 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038480054   ⟹   XP_038335982
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1656,701,629 - 56,736,571 (+)NCBI
RefSeq Acc Id: XM_038480055   ⟹   XP_038335983
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1656,702,017 - 56,735,850 (+)NCBI
RefSeq Acc Id: XM_038480056   ⟹   XP_038335984
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1656,688,187 - 56,736,571 (+)NCBI
RefSeq Acc Id: XM_038541369   ⟹   XP_038397297
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0657,140,702 - 57,175,646 (+)NCBI
RefSeq Acc Id: XM_038541370   ⟹   XP_038397298
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0657,141,090 - 57,174,925 (+)NCBI
RefSeq Acc Id: XM_038541371   ⟹   XP_038397299
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0657,127,272 - 57,175,646 (+)NCBI
RefSeq Acc Id: XM_038605502   ⟹   XP_038461430
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0656,680,316 - 56,715,030 (+)NCBI
RefSeq Acc Id: XM_038605503   ⟹   XP_038461431
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0656,680,704 - 56,714,309 (+)NCBI
RefSeq Acc Id: XM_038605504   ⟹   XP_038461432
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0656,666,816 - 56,715,030 (+)NCBI
RefSeq Acc Id: XM_038670134   ⟹   XP_038526062
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0657,021,910 - 57,056,901 (+)NCBI
RefSeq Acc Id: XM_038670135   ⟹   XP_038526063
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0657,022,298 - 57,056,180 (+)NCBI
RefSeq Acc Id: XM_038670136   ⟹   XP_038526064
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0657,008,353 - 57,056,901 (+)NCBI
RefSeq Acc Id: XM_537076   ⟹   XP_537076
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1656,644,351 - 56,678,397 (+)NCBI
Dog10K_Boxer_Tasha659,343,529 - 59,378,033 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_537076   ⟸   XM_537076
- UniProtKB: E2RR26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005621988   ⟸   XM_005621931
- UniProtKB: E2RR26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022276189   ⟸   XM_022420481
- Sequence:
RefSeq Acc Id: ENSCAFP00000053804   ⟸   ENSCAFT00000063205
RefSeq Acc Id: ENSCAFP00000029892   ⟸   ENSCAFT00000032099
RefSeq Acc Id: XP_038335984   ⟸   XM_038480056
RefSeq Acc Id: XP_038335982   ⟸   XM_038480054
RefSeq Acc Id: XP_038335983   ⟸   XM_038480055
RefSeq Acc Id: XP_038461432   ⟸   XM_038605504
RefSeq Acc Id: XP_038461430   ⟸   XM_038605502
RefSeq Acc Id: XP_038461431   ⟸   XM_038605503
RefSeq Acc Id: XP_038526064   ⟸   XM_038670136
RefSeq Acc Id: XP_038526062   ⟸   XM_038670134
RefSeq Acc Id: XP_038526063   ⟸   XM_038670135
RefSeq Acc Id: XP_038397299   ⟸   XM_038541371
RefSeq Acc Id: XP_038397297   ⟸   XM_038541369
RefSeq Acc Id: XP_038397298   ⟸   XM_038541370

Promoters
RGD ID:13683813
Promoter ID:EPDNEW_C1882
Type:initiation region
Name:GLMN_1
Description:glomulin, FKBP associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1656,644,450 - 56,644,510EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020159 Ensembl, ENTREZGENE
Ensembl Protein ENSCAFP00000029892 ENTREZGENE
NCBI Gene GLMN ENTREZGENE
UniProt E2RR26 ENTREZGENE
VGNC ID VGNC:41264 ENTREZGENE