Glmn (glomulin, FKBP associated protein) - Rat Genome Database

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Gene: Glmn (glomulin, FKBP associated protein) Rattus norvegicus
Analyze
Symbol: Glmn
Name: glomulin, FKBP associated protein
RGD ID: 1588600
Description: Predicted to enable hepatocyte growth factor receptor binding activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase inhibitor activity. Predicted to be involved in several processes, including negative regulation of T cell proliferation; regulation of gene expression; and vasculogenesis. Predicted to act upstream of or within several processes, including neural tube closure; positive regulation of interleukin-2 production; and regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of Cul2-RING ubiquitin ligase complex; Cul3-RING ubiquitin ligase complex; and Cul4A-RING E3 ubiquitin ligase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in arteriovenous malformation and glomus tumor. Orthologous to human GLMN (glomulin, FKBP associated protein); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; C60 fullerene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: FKBP associated protein; FKBP-associated protein; glomulin; LOC360907
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,187,144 - 2,231,295 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl142,187,642 - 2,230,420 (+)Ensembl
Rnor_6.0143,204,390 - 3,247,703 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,204,390 - 3,247,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,205,285 - 3,249,200 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,744,359 - 2,789,190 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1142,744,817 - 2,758,826 (+)NCBI
Celera142,207,607 - 2,249,016 (+)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:8955134   PMID:11571281   PMID:12477932   PMID:12604780   PMID:22405651  


Genomics

Comparative Map Data
Glmn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2142,187,144 - 2,231,295 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl142,187,642 - 2,230,420 (+)Ensembl
Rnor_6.0143,204,390 - 3,247,703 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl143,204,390 - 3,247,695 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0143,205,285 - 3,249,200 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,744,359 - 2,789,190 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1142,744,817 - 2,758,826 (+)NCBI
Celera142,207,607 - 2,249,016 (+)NCBICelera
Cytogenetic Map14p22NCBI
GLMN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38192,246,402 - 92,370,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl192,246,402 - 92,298,987 (-)EnsemblGRCh38hg38GRCh38
GRCh37192,711,959 - 92,764,544 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36192,484,543 - 92,537,154 (-)NCBINCBI36hg18NCBI36
Celera190,958,376 - 91,010,996 (-)NCBI
Cytogenetic Map1p22.1NCBI
HuRef190,832,161 - 90,885,013 (-)NCBIHuRef
CHM1_1192,826,713 - 92,879,343 (-)NCBICHM1_1
T2T-CHM13v2.0192,091,304 - 92,143,896 (-)NCBI
Glmn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395107,696,828 - 107,745,754 (-)NCBIGRCm39mm39
GRCm39 Ensembl5107,696,833 - 107,745,754 (-)Ensembl
GRCm385107,548,962 - 107,597,888 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5107,548,967 - 107,597,888 (-)EnsemblGRCm38mm10GRCm38
MGSCv375107,977,986 - 108,026,907 (-)NCBIGRCm37mm9NCBIm37
MGSCv365107,789,326 - 107,837,877 (-)NCBImm8
Celera5104,662,262 - 104,710,248 (-)NCBICelera
Cytogenetic Map5FNCBI
Glmn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554232,195,423 - 2,232,706 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554232,195,428 - 2,233,389 (+)NCBIChiLan1.0ChiLan1.0
GLMN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1193,646,499 - 93,701,803 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl193,646,499 - 93,701,430 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0194,907,342 - 94,963,052 (-)NCBIMhudiblu_PPA_v0panPan3
GLMN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1656,631,186 - 56,678,397 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl656,644,456 - 56,678,399 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha659,330,330 - 59,378,033 (+)NCBI
ROS_Cfam_1.0657,008,353 - 57,056,901 (+)NCBI
ROS_Cfam_1.0 Ensembl657,021,936 - 57,056,089 (+)Ensembl
UMICH_Zoey_3.1656,688,187 - 56,736,571 (+)NCBI
UNSW_CanFamBas_1.0656,666,816 - 56,715,030 (+)NCBI
UU_Cfam_GSD_1.0657,127,272 - 57,175,646 (+)NCBI
Glmn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,120,584 - 102,169,696 (-)NCBI
SpeTri2.0NW_0049365376,778,317 - 6,827,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GLMN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4124,773,979 - 124,813,337 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14124,773,957 - 124,813,336 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24136,442,586 - 136,467,816 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GLMN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12040,950,948 - 41,007,120 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2040,951,342 - 41,008,791 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603376,991,119 - 77,056,937 (-)NCBIVero_WHO_p1.0
Glmn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247425,434,588 - 5,477,647 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D14Got3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,226,086 - 2,226,258 (+)MAPPERmRatBN7.2
Rnor_6.0143,243,323 - 3,243,494NCBIRnor6.0
Rnor_5.0143,243,915 - 3,244,086UniSTSRnor5.0
RGSC_v3.4142,783,907 - 2,784,079RGDRGSC3.4
RGSC_v3.4142,783,908 - 2,784,079UniSTSRGSC3.4
RGSC_v3.1142,783,908 - 2,784,079RGD
Celera142,244,744 - 2,244,911UniSTS
RH 3.4 Map1437.1UniSTS
RH 3.4 Map1437.1RGD
RH 2.0 Map1450.4RGD
Cytogenetic Map14p22UniSTS
RH131951  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,223,328 - 2,223,512 (+)MAPPERmRatBN7.2
Rnor_6.0692,629,544 - 92,629,727NCBIRnor6.0
Rnor_6.0143,240,565 - 3,240,748NCBIRnor6.0
Rnor_5.0143,241,157 - 3,241,340UniSTSRnor5.0
Rnor_5.06102,076,929 - 102,077,112UniSTSRnor5.0
RGSC_v3.4142,781,150 - 2,781,333UniSTSRGSC3.4
Celera142,241,986 - 2,242,169UniSTS
RH 3.4 Map1437.2UniSTS
Cytogenetic Map14p22UniSTS
Cytogenetic Map6q24UniSTS
RH133631  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,190,474 - 2,190,676 (+)MAPPERmRatBN7.2
Rnor_6.0143,207,721 - 3,207,922NCBIRnor6.0
Rnor_5.0143,208,616 - 3,208,817UniSTSRnor5.0
RGSC_v3.4142,747,690 - 2,747,891UniSTSRGSC3.4
Celera142,210,941 - 2,211,142UniSTS
RH 3.4 Map1437.2UniSTS
Cytogenetic Map14p22UniSTS
BE102235  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,217,162 - 2,217,312 (+)MAPPERmRatBN7.2
Rnor_6.0143,234,416 - 3,234,565NCBIRnor6.0
Rnor_5.0143,235,242 - 3,235,391UniSTSRnor5.0
RGSC_v3.4142,775,235 - 2,775,384UniSTSRGSC3.4
Celera142,236,424 - 2,236,573UniSTS
RH 3.4 Map1437.2UniSTS
Cytogenetic Map14p22UniSTS
BF388461  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2142,195,638 - 2,195,778 (+)MAPPERmRatBN7.2
Rnor_6.0143,212,892 - 3,213,031NCBIRnor6.0
Rnor_5.0143,213,718 - 3,213,857UniSTSRnor5.0
RGSC_v3.4142,753,711 - 2,753,850UniSTSRGSC3.4
Celera142,214,963 - 2,215,102UniSTS
RH 3.4 Map1437.2UniSTS
Cytogenetic Map14p22UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14121760611030812Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14121760616960180Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:95
Interacting mature miRNAs:101
Transcripts:ENSRNOT00000061583
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 20 8 18 8 74 22 39 10
Low 3 23 37 33 1 33 8 11 13 2 1 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001105993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001841014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005492903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106605 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC100158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC162027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000061583   ⟹   ENSRNOP00000058301
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,187,642 - 2,230,420 (+)Ensembl
Rnor_6.0 Ensembl143,204,806 - 3,247,669 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088078   ⟹   ENSRNOP00000072112
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl142,187,642 - 2,230,420 (+)Ensembl
Rnor_6.0 Ensembl143,204,390 - 3,247,695 (+)Ensembl
RefSeq Acc Id: NM_001105993   ⟹   NP_001099463
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,144 - 2,230,459 (+)NCBI
Rnor_6.0143,204,390 - 3,247,695 (+)NCBI
Rnor_5.0143,205,285 - 3,249,200 (+)NCBI
RGSC_v3.4142,744,359 - 2,789,190 (+)RGD
Celera142,207,607 - 2,249,016 (+)RGD
Sequence:
RefSeq Acc Id: XM_008769922   ⟹   XP_008768144
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,531 - 2,230,433 (+)NCBI
Rnor_6.0143,204,792 - 3,247,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769923   ⟹   XP_008768145
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,638 - 2,230,433 (+)NCBI
Rnor_6.0143,204,884 - 3,247,656 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008769924   ⟹   XP_008768146
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,531 - 2,231,295 (+)NCBI
Rnor_6.0143,204,884 - 3,247,703 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091653   ⟹   XP_038947581
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,638 - 2,230,433 (+)NCBI
RefSeq Acc Id: XM_039091654   ⟹   XP_038947582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,554 - 2,231,295 (+)NCBI
RefSeq Acc Id: XM_039091655   ⟹   XP_038947583
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,631 - 2,231,295 (+)NCBI
RefSeq Acc Id: XM_039091656   ⟹   XP_038947584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,580 - 2,231,295 (+)NCBI
RefSeq Acc Id: XM_039091657   ⟹   XP_038947585
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,614 - 2,231,295 (+)NCBI
RefSeq Acc Id: XR_005492901
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,531 - 2,214,123 (+)NCBI
RefSeq Acc Id: XR_005492902
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,531 - 2,214,123 (+)NCBI
RefSeq Acc Id: XR_005492903
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2142,187,531 - 2,215,128 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001099463   ⟸   NM_001105993
- UniProtKB: D3ZKQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768144   ⟸   XM_008769922
- Peptide Label: isoform X1
- UniProtKB: D3ZKQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008768146   ⟸   XM_008769924
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008768145   ⟸   XM_008769923
- Peptide Label: isoform X1
- UniProtKB: D3ZKQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000058301   ⟸   ENSRNOT00000061583
RefSeq Acc Id: ENSRNOP00000072112   ⟸   ENSRNOT00000088078
RefSeq Acc Id: XP_038947582   ⟸   XM_039091654
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947584   ⟸   XM_039091656
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947585   ⟸   XM_039091657
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947583   ⟸   XM_039091655
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947581   ⟸   XM_039091653
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKQ3-F1-model_v2 AlphaFold D3ZKQ3 1-596 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699161
Promoter ID:EPDNEW_R9683
Type:initiation region
Name:Glmn_1
Description:glomulin, FKBP associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0143,204,835 - 3,204,895EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588600 AgrOrtholog
BioCyc Gene G2FUF-16625 BioCyc
Ensembl Genes ENSRNOG00000002054 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058301 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000072112 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000061583 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000088078 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134639 IMAGE-MGC_LOAD
InterPro Glomulin UniProtKB/TrEMBL
  Unchr_YAP/Alf4/glomulin UniProtKB/TrEMBL
KEGG Report rno:289437 UniProtKB/TrEMBL
MGC_CLONE MGC:94443 IMAGE-MGC_LOAD
NCBI Gene 289437 ENTREZGENE
PANTHER Glomulin UniProtKB/TrEMBL
Pfam DUF1760 UniProtKB/TrEMBL
PhenoGen Glmn PhenoGen
UniProt D3ZKQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-01-10 Glmn  FKBP-associated protein  Glmn_predicted  glomulin, FKBP associated protein (predicted)  Data Merged 737654 APPROVED
2006-11-19 Glmn  FKBP-associated protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Glmn_predicted  glomulin, FKBP associated protein (predicted)      Symbol and Name status set to approved 70820 APPROVED