ATAD3A (ATPase family AAA domain containing 3A) - Rat Genome Database

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Gene: ATAD3A (ATPase family AAA domain containing 3A) Homo sapiens
Analyze
Symbol: ATAD3A
Name: ATPase family AAA domain containing 3A
RGD ID: 1314304
HGNC Page HGNC:25567
Description: Enables several functions, including ATP binding activity; ATP hydrolysis activity; and identical protein binding activity. Involved in several processes, including antiviral innate immune response; negative regulation of PERK-mediated unfolded protein response; and regulation of cell growth. Located in mitochondrion. Is active in mitochondria-associated endoplasmic reticulum membrane contact site and mitochondrial inner membrane. Implicated in Harel-Yoon syndrome and neonatal lethal pontocerebellar hypoplasia, hypotonia, and respiratory insufficiency syndrome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: ATPase family AAA domain-containing protein 3A; ATPase family, AAA domain containing 3A; FLJ10709; FLJ35514; HAYOS; PHRINL
RGD Orthologs
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,512,162 - 1,534,685 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,512,162 - 1,534,685 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,447,542 - 1,470,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,437,418 - 1,459,927 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411,532,821 - 1,555,331NCBI
Celera11,110,376 - 1,132,920 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1720,811 - 743,664 (+)NCBIHuRef
CHM1_111,434,817 - 1,457,345 (+)NCBICHM1_1
T2T-CHM13v2.01946,666 - 969,189 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 20 of 31 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ATAD3AHumancerebellar hypoplasia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital cerebellar hypoplasiaClinVarPMID:25741868 and PMID:31727539
ATAD3AHumanchromosome 1p36 deletion syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 1p36 deletion syndromeClinVarPMID:25741868
ATAD3AHumancongenital myasthenic syndrome 8  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital myasthenic syndrome 8ClinVarPMID:24951643 and PMID:28492532
ATAD3AHumandilated cardiomyopathy 1LL  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Left ventricular noncompaction 8ClinVarPMID:28492532
ATAD3AHumanEhlers-Danlos syndrome spondylodysplastic type 2  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome more ...ClinVarPMID:10862081 more ...
ATAD3AHumangenetic disease  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:33023636
ATAD3AHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
ATAD3AHumangenetic disease  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868
ATAD3AHumanGoldberg-Shprintzen syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Shprintzen-Goldberg syndromeClinVarPMID:28492532
ATAD3AHumanGoldberg-Shprintzen syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Shprintzen-Goldberg syndromeClinVarPMID:23892090 more ...
ATAD3AHumanHarel-Yoon syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Harel-Yoon syndromeClinVarPMID:25741868 more ...
ATAD3AHumanHarel-Yoon syndrome  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Harel-Yoon syndromeClinVarPMID:25741868 and PMID:32004445
ATAD3AHumanHarel-Yoon syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Harel-Yoon syndromeClinVar 
ATAD3AHumanHarel-Yoon syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Harel-Yoon syndromeClinVarPMID:25741868
ATAD3AHumanHarel-Yoon syndrome  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Harel-Yoon syndromeClinVarPMID:25741868 and PMID:28492532
ATAD3AHumanHarel-Yoon syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Harel-Yoon syndromeClinVarPMID:25741868 and PMID:27640307
ATAD3AHumanHarel-Yoon syndrome  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Harel-Yoon syndromeClinVarPMID:27640307
ATAD3AHumanIdiopathic Generalized Epilepsy  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Idiopathic generalized epilepsyClinVarPMID:28492532
ATAD3AHumanimmunodeficiency 16  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Combined immunodeficiency due to OX40 deficiencyClinVarPMID:10862081 more ...
ATAD3AHumanimmunodeficiency 38  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiencyClinVarPMID:10862081 more ...
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Object Symbol
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Reference
Notes
Source
Original Reference(s)
ATAD3AHumanProstatic Neoplasms  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:21584487
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ATAD3AHumanHarel-Yoon syndrome  IAGP 7240710 OMIM 
ATAD3AHumanneonatal lethal pontocerebellar hypoplasia, hypotonia, and respiratory insufficiency syndrome  IAGP 7240710 OMIM 

1 to 20 of 91 rows

  
Object Symbol
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Term
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With
Reference
Notes
Source
Original Reference(s)
ATAD3AHuman(+)-schisandrin B multiple interactionsISOAtad3a (Rattus norvegicus)6480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of ATAD3A mRNA]CTDPMID:31150632
ATAD3AHuman(1->4)-beta-D-glucan multiple interactionsISOAtad3a (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of ATAD3A mRNACTDPMID:36331819
ATAD3AHuman1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISOAtad3a (Mus musculus)6480464o and p'-DDT results in increased expression of ATAD3A mRNACTDPMID:24096037
ATAD3AHuman1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane increases expressionISOAtad3a (Rattus norvegicus)6480464o and p'-DDT results in increased expression of ATAD3A mRNACTDPMID:24096037
ATAD3AHuman1,2-dimethylhydrazine increases expressionISOAtad3a (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of ATAD3A mRNACTDPMID:22206623
ATAD3AHuman1,2-dimethylhydrazine multiple interactionsISOAtad3a (Mus musculus)6480464Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of ATAD3A mRNA]CTDPMID:22206623
ATAD3AHuman17alpha-ethynylestradiol decreases expressionEXP 6480464Ethinyl Estradiol results in decreased expression of ATAD3A mRNACTDPMID:18936297
ATAD3AHuman17alpha-ethynylestradiol increases expressionISOAtad3a (Rattus norvegicus)6480464Ethinyl Estradiol results in increased expression of ATAD3A mRNACTDPMID:24096037
ATAD3AHuman17alpha-ethynylestradiol increases expressionISOAtad3a (Mus musculus)6480464Ethinyl Estradiol results in increased expression of ATAD3A mRNACTDPMID:17942748 and PMID:24096037
ATAD3AHuman17alpha-ethynylestradiol multiple interactionsISOAtad3a (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ATAD3A mRNACTDPMID:17942748
ATAD3AHuman17beta-estradiol decreases expressionISOAtad3a (Rattus norvegicus)6480464Estradiol results in decreased expression of ATAD3A mRNACTDPMID:32145629
ATAD3AHuman17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of ATAD3A mRNACTDPMID:31614463
ATAD3AHuman17beta-estradiol increases expressionISOAtad3a (Mus musculus)6480464Estradiol results in increased expression of ATAD3A mRNACTDPMID:39298647
ATAD3AHuman2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAtad3a (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ATAD3A mRNACTDPMID:21570461
ATAD3AHuman2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOAtad3a (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of ATAD3A mRNACTDPMID:17942748
ATAD3AHuman2,4-dinitrotoluene affects expressionISOAtad3a (Rattus norvegicus)64804642 and 4-dinitrotoluene affects the expression of ATAD3A mRNACTDPMID:21346803
ATAD3AHuman2,6-dinitrotoluene affects expressionISOAtad3a (Rattus norvegicus)64804642 and 6-dinitrotoluene affects the expression of ATAD3A mRNACTDPMID:21346803
ATAD3AHuman3-chloropropane-1,2-diol increases expressionISOAtad3a (Rattus norvegicus)6480464alpha-Chlorohydrin results in increased expression of ATAD3A proteinCTDPMID:34915118
ATAD3AHuman4,4'-diaminodiphenylmethane increases expressionISOAtad3a (Mus musculus)64804644 and 4'-diaminodiphenylmethane results in increased expression of ATAD3A mRNACTDPMID:18648102
ATAD3AHuman4,4'-sulfonyldiphenol increases expressionISOAtad3a (Mus musculus)6480464bisphenol S results in increased expression of ATAD3A mRNACTDPMID:39298647

1 to 20 of 91 rows

Biological Process

  

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
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Term
Qualifier
Evidence
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Reference
Notes
Source
Original Reference(s)
ATAD3AHumanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
ATAD3AHumanmitochondria-associated endoplasmic reticulum membrane contact site is_active_inIDA 150520179 PMID:39116259UniProtPMID:39116259
ATAD3AHumanmitochondrial inner membrane is_active_inIDA 150520179 PMID:20154147FlyBasePMID:20154147
ATAD3AHumanmitochondrial inner membrane located_inIDA 150520179 PMID:20349121UniProtPMID:20349121
ATAD3AHumanmitochondrial inner membrane located_inIEAUniProtKB-KW:KW-0999150520179 UniProtGO_REF:0000043
ATAD3AHumanmitochondrial inner membrane located_inIEAUniProtKB-SubCell:SL-0168150520179 UniProtGO_REF:0000044
ATAD3AHumanmitochondrial nucleoid located_inIEAUniProtKB-SubCell:SL-0269150520179 UniProtGO_REF:0000044
ATAD3AHumanmitochondrial nucleoid located_inIEAUniProtKB-KW:KW-1135150520179 UniProtGO_REF:0000043
ATAD3AHumanmitochondrion located_inIEAUniProtKB:Q925I1 and ensembl:ENSMUSP00000030903150520179 EnsemblGO_REF:0000107
ATAD3AHumanmitochondrion is_active_inIBAMGI:1919214 more ...150520179 GO_CentralGO_REF:0000033
ATAD3AHumanmitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
ATAD3AHumanmitochondrion located_inIDA 150520179 PMID:20332122HPAGO_REF:0000052 and PMID:20332122
ATAD3AHumanmitochondrion located_inHTP 150520179 PMID:34800366FlyBasePMID:34800366
1 to 13 of 13 rows

Molecular Function
1 to 12 of 12 rows

  
1 to 12 of 12 rows

1 to 20 of 100 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ATAD3AHuman3-Methylglutaconic aciduria  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanAnteverted nares  IAGP 8699517 HPOMIM:618810
ATAD3AHumanAtaxia  IAGP 8699517 HPOMIM:617183
ATAD3AHumanAutosomal dominant inheritance  IAGP 8699517 HPOMIM:617183
ATAD3AHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:618810
ATAD3AHumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:617183
ATAD3AHumanAxial hypotonia  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanAxial hypotonia  IAGP 8699517 HPOMIM:617183
ATAD3AHumanBrittle hair  IAGP 8699517 HPOMIM:618810
ATAD3AHumanCataract  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanCerebellar atrophy  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanCerebellar atrophy  IAGP 8699517 HPOMIM:617183
ATAD3AHumanCerebellar hypoplasia  IAGP 8699517 HPOMIM:618810
ATAD3AHumanCorneal opacity  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanCorneal opacity  IAGP 8699517 HPOMIM:617183
ATAD3AHumanCryptorchidism  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanDeeply set eye  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanDeeply set eye  IAGP 8699517 HPOMIM:617183
ATAD3AHumanDelayed puberty  IAGP 8699517 HPOORPHA:496790
ATAD3AHumanDelayed speech and language development  IAGP 8699517 HPOMIM:617183
1 to 20 of 100 rows
Object Symbol
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Evidence
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Reference
Notes
Source
Original Reference(s)
ATAD3AHumanCerebellar hypoplasia  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Underdeveloped cerebellumClinVarPMID:25741868 and PMID:31727539
ATAD3AHumanGeneralized-onset seizure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Generalised epilepsyClinVar 
ATAD3AHumanGeneralized-onset seizure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Generalised epilepsyClinVar 
ATAD3AHumanGeneralized-onset seizure  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Generalised epilepsyClinVarPMID:28492532

#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
1 to 10 of 22 rows
PMID:14702039   PMID:15489334   PMID:16055720   PMID:16344560   PMID:16710414   PMID:16909202   PMID:17110338   PMID:17148452   PMID:17210950   PMID:17353931   PMID:18063578   PMID:18639545  
PMID:19041431   PMID:19156129   PMID:19531213   PMID:19664342   PMID:19738201   PMID:19740762   PMID:20154147   PMID:20301682   PMID:20332122   PMID:20349121   PMID:20351179   PMID:20360068  
PMID:20473970   PMID:20877624   PMID:20890123   PMID:21145461   PMID:21182205   PMID:21584487   PMID:21743956   PMID:21873635   PMID:21907836   PMID:22190034   PMID:22192748   PMID:22268729  
PMID:22318359   PMID:22542587   PMID:22586326   PMID:22623428   PMID:22664726   PMID:22810586   PMID:23182705   PMID:23443559   PMID:23455922   PMID:24057885   PMID:24189400   PMID:24239551  
PMID:24244333   PMID:24366813   PMID:24457600   PMID:24550385   PMID:24639526   PMID:24711643   PMID:25315684   PMID:25375035   PMID:25544563   PMID:25796446   PMID:25823022   PMID:25852190  
PMID:25921289   PMID:25963833   PMID:26209609   PMID:26344197   PMID:26460568   PMID:26471122   PMID:26472760   PMID:26496610   PMID:26549023   PMID:26618866   PMID:26638075   PMID:26760575  
PMID:26777405   PMID:26839216   PMID:26949251   PMID:26972000   PMID:27025967   PMID:27320910   PMID:27499296   PMID:27503909   PMID:27545878   PMID:27591049   PMID:27609421   PMID:27640307  
PMID:27684187   PMID:27705803   PMID:28031328   PMID:28158749   PMID:28330616   PMID:28416769   PMID:28515276   PMID:28549128   PMID:28611215   PMID:28675297   PMID:28869606   PMID:28902428  
PMID:28977666   PMID:29117863   PMID:29128334   PMID:29229926   PMID:29298432   PMID:29331416   PMID:29378950   PMID:29420262   PMID:29467282   PMID:29478914   PMID:29507755   PMID:29511296  
PMID:29568061   PMID:29599191   PMID:29615496   PMID:29845934   PMID:29991511   PMID:30274258   PMID:30425250   PMID:30462309   PMID:30463901   PMID:30581152   PMID:30619736   PMID:30804502  
1 to 10 of 22 rows



ATAD3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,512,162 - 1,534,685 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,512,162 - 1,534,685 (+)EnsemblGRCh38hg38GRCh38
GRCh3711,447,542 - 1,470,065 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,437,418 - 1,459,927 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411,532,821 - 1,555,331NCBI
Celera11,110,376 - 1,132,920 (-)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1720,811 - 743,664 (+)NCBIHuRef
CHM1_111,434,817 - 1,457,345 (+)NCBICHM1_1
T2T-CHM13v2.01946,666 - 969,189 (+)NCBIT2T-CHM13v2.0
Atad3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,825,097 - 155,845,579 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,825,098 - 155,845,550 (-)EnsemblGRCm39 Ensembl
GRCm384155,740,640 - 155,761,124 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,740,641 - 155,761,093 (-)EnsemblGRCm38mm10GRCm38
MGSCv374155,114,749 - 155,135,207 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,584,441 - 154,604,893 (-)NCBIMGSCv36mm8
Celera4158,012,406 - 158,032,870 (-)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.2NCBI
Atad3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,632,545 - 171,652,725 (-)NCBIGRCr8
mRatBN7.25166,350,302 - 166,370,492 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,350,304 - 166,370,482 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,055,281 - 169,075,423 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05170,876,707 - 170,896,849 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,839,246 - 170,859,388 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,189,590 - 173,209,809 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,189,592 - 173,209,768 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,665,200 - 176,685,381 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,598,553 - 172,618,731 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,609,041 - 172,629,268 (-)NCBI
Celera5164,550,758 - 164,570,936 (-)NCBICelera
Cytogenetic Map5q36NCBI
ATAD3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,587,385 - 56,613,475 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,587,428 - 56,612,746 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,663,522 - 56,689,500 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,789,609 - 56,815,653 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,789,621 - 56,815,650 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,780,163 - 56,806,214 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,672,427 - 56,698,586 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,062,790 - 57,088,831 (+)NCBIUU_Cfam_GSD_1.0
LOC100525876
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,701,460 - 63,721,573 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,706,155 - 63,721,574 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,310,001 - 58,325,278 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATAD3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,965,964 - 129,987,866 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605434,429,209 - 34,452,701 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

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Variants in ATAD3A
312 total Variants

1 to 10 of 528 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
NM_001170535.3(ATAD3A):c.750G>A (p.Thr250=) single nucleotide variant Harel-Yoon syndrome [RCV004783802]|Inborn genetic diseases [RCV002525248]|not provided [RCV000521220] Chr1:1520617 [GRCh38]
Chr1:1455997 [GRCh37]
Chr1:1p36.33
likely pathogenic|uncertain significance
NM_001170535.3(ATAD3A):c.1700AGA[1] (p.Lys568del) microsatellite Harel-Yoon syndrome [RCV001293247] Chr1:1534011..1534013 [GRCh38]
Chr1:1469391..1469393 [GRCh37]
Chr1:1p36.33
uncertain significance
NM_001170535.3(ATAD3A):c.251C>T (p.Thr84Met) single nucleotide variant not provided [RCV000519405] Chr1:1516057 [GRCh38]
Chr1:1451437 [GRCh37]
Chr1:1p36.33
uncertain significance
NM_001170535.3(ATAD3A):c.634C>T (p.Arg212Cys) single nucleotide variant not provided [RCV000523197] Chr1:1520260 [GRCh38]
Chr1:1455640 [GRCh37]
Chr1:1p36.33
uncertain significance
NM_001170535.3(ATAD3A):c.658C>T (p.Gln220Ter) single nucleotide variant not provided [RCV000518892] Chr1:1520284 [GRCh38]
Chr1:1455664 [GRCh37]
Chr1:1p36.33
likely pathogenic|uncertain significance
GRCh37/hg19 1q21.2(chr1:149041013-149699420)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050339]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050339]|See cases [RCV000050339] Chr1:149041013..149699420 [GRCh37]
Chr1:1q21.2
benign
GRCh38/hg38 1p36.33-36.32(chr1:844347-3006252)x1 copy number loss See cases [RCV000050857] Chr1:844347..3006252 [GRCh38]
Chr1:779727..2922816 [GRCh37]
Chr1:769590..2912676 [NCBI36]
Chr1:1p36.33-36.32
pathogenic
GRCh38/hg38 1p36.33-36.32(chr1:844347-3712147)x1 copy number loss See cases [RCV000050882] Chr1:844347..3712147 [GRCh38]
Chr1:779727..3628711 [GRCh37]
Chr1:769590..3618571 [NCBI36]
Chr1:1p36.33-36.32
pathogenic
GRCh38/hg38 1p36.33-36.31(chr1:844347-5682587)x1 copy number loss See cases [RCV000050642] Chr1:844347..5682587 [GRCh38]
Chr1:779727..5742647 [GRCh37]
Chr1:769590..5665234 [NCBI36]
Chr1:1p36.33-36.31
pathogenic
GRCh38/hg38 1p36.33-36.32(chr1:844347-3319395)x1 copy number loss See cases [RCV000050647] Chr1:844347..3319395 [GRCh38]
Chr1:779727..3235959 [GRCh37]
Chr1:769590..3225819 [NCBI36]
Chr1:1p36.33-36.32
pathogenic
1 to 10 of 528 rows

Predicted Target Of
Summary Value
Count of predictions:3080
Count of miRNA genes:757
Interacting mature miRNAs:895
Transcripts:ENST00000339113, ENST00000378755, ENST00000378756, ENST00000400830, ENST00000429957, ENST00000439513, ENST00000536055
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597122647GWAS1218721_Hblood protein measurement QTL GWAS1218721 (human)2e-68blood protein amount (VT:0005416)blood protein measurement (CMO:0000028)115270991527100Human
597167576GWAS1263650_Hattempted suicide QTL GWAS1263650 (human)0.0000006attempted suicide115339441533945Human
596972710GWAS1092229_Hattempted suicide QTL GWAS1092229 (human)0.0000006attempted suicide115339441533945Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human

ATAD3B_8108  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711,431,083 - 1,431,706UniSTSGRCh37
GRCh3711,469,524 - 1,470,189UniSTSGRCh37
Build 3611,420,946 - 1,421,569RGDNCBI36
Celera11,147,516 - 1,148,139UniSTS
Celera11,110,254 - 1,110,919RGD
HuRef1704,802 - 705,425UniSTS
HuRef1743,121 - 743,786UniSTS
D1S3674  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711,410,914 - 1,411,021UniSTSGRCh37
GRCh3711,449,270 - 1,449,375UniSTSGRCh37
Build 3611,400,777 - 1,400,884RGDNCBI36
Celera11,168,334 - 1,168,441UniSTS
Celera11,131,068 - 1,131,173RGD
HuRef1684,500 - 684,607UniSTS
HuRef1722,558 - 722,663UniSTS
SHGC-74117  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711,469,914 - 1,470,061UniSTSGRCh37
Build 3611,459,777 - 1,459,924RGDNCBI36
Celera11,110,382 - 1,110,529RGD
Cytogenetic Map1p36.33UniSTS
HuRef1743,511 - 743,658UniSTS
TNG Radiation Hybrid Map176149.0UniSTS
GeneMap99-GB4 RH Map115.89UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1948 465 2270 7303 6469 53 3734 1 852 1744 1617 175 1


1 to 29 of 29 rows
RefSeq Transcripts NG_053035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001170536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047424288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047424289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047424290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054337421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001737282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002956997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK001571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092833 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC011814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC014101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA206969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GU189416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 29 of 29 rows

Ensembl Acc Id: ENST00000339113   ⟹   ENSP00000339421
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,512,385 - 1,534,613 (+)Ensembl
Ensembl Acc Id: ENST00000378755   ⟹   ENSP00000368030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,512,175 - 1,534,685 (+)Ensembl
Ensembl Acc Id: ENST00000378756   ⟹   ENSP00000368031
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,512,162 - 1,534,685 (+)Ensembl
Ensembl Acc Id: ENST00000400830   ⟹   ENSP00000383631
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,523,955 - 1,534,142 (+)Ensembl
Ensembl Acc Id: ENST00000429957
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,517,621 - 1,522,780 (+)Ensembl
Ensembl Acc Id: ENST00000439513
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,517,070 - 1,517,775 (+)Ensembl
Ensembl Acc Id: ENST00000536055   ⟹   ENSP00000439290
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,512,530 - 1,534,685 (+)Ensembl
Ensembl Acc Id: ENST00000672388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11,512,165 - 1,534,584 (+)Ensembl
RefSeq Acc Id: NM_001170535   ⟹   NP_001164006
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811,512,162 - 1,534,685 (+)NCBI
GRCh3711,447,523 - 1,470,067 (+)ENTREZGENE
HuRef1720,811 - 743,664 (+)ENTREZGENE
CHM1_111,434,817 - 1,457,345 (+)NCBI
T2T-CHM13v2.01946,666 - 969,189 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001170536   ⟹   NP_001164007
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811,512,530 - 1,534,685 (+)NCBI
GRCh3711,447,523 - 1,470,067 (+)ENTREZGENE
HuRef1720,811 - 743,664 (+)ENTREZGENE
CHM1_111,435,204 - 1,457,345 (+)NCBI
T2T-CHM13v2.01947,034 - 969,189 (+)NCBI
Sequence:
RefSeq Acc Id: NM_018188   ⟹   NP_060658
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811,512,162 - 1,534,685 (+)NCBI
GRCh3711,447,523 - 1,470,067 (+)ENTREZGENE
Build 3611,437,418 - 1,459,927 (+)NCBI Archive
HuRef1720,811 - 743,664 (+)ENTREZGENE
CHM1_111,434,817 - 1,457,345 (+)NCBI
T2T-CHM13v2.01946,666 - 969,189 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047424288   ⟹   XP_047280244
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811,512,162 - 1,534,685 (+)NCBI
RefSeq Acc Id: XM_047424289   ⟹   XP_047280245
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811,512,162 - 1,529,300 (+)NCBI
RefSeq Acc Id: XM_047424290   ⟹   XP_047280246
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811,512,162 - 1,527,682 (+)NCBI
RefSeq Acc Id: XM_054337419   ⟹   XP_054193394
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01946,666 - 969,189 (+)NCBI
RefSeq Acc Id: XM_054337420   ⟹   XP_054193395
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01946,666 - 963,804 (+)NCBI
RefSeq Acc Id: XM_054337421   ⟹   XP_054193396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01946,666 - 962,186 (+)NCBI
1 to 30 of 31 rows
Protein RefSeqs NP_001164006 (Get FASTA)   NCBI Sequence Viewer  
  NP_001164007 (Get FASTA)   NCBI Sequence Viewer  
  NP_060658 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280244 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280245 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280246 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193394 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193395 (Get FASTA)   NCBI Sequence Viewer  
  XP_054193396 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH07803 (Get FASTA)   NCBI Sequence Viewer  
  AAH11814 (Get FASTA)   NCBI Sequence Viewer  
  AAH14101 (Get FASTA)   NCBI Sequence Viewer  
  AAH33109 (Get FASTA)   NCBI Sequence Viewer  
  AAH63607 (Get FASTA)   NCBI Sequence Viewer  
  ACZ80514 (Get FASTA)   NCBI Sequence Viewer  
  BAA91764 (Get FASTA)   NCBI Sequence Viewer  
  BAC03595 (Get FASTA)   NCBI Sequence Viewer  
  BAG51625 (Get FASTA)   NCBI Sequence Viewer  
  EAW56186 (Get FASTA)   NCBI Sequence Viewer  
  EAW56187 (Get FASTA)   NCBI Sequence Viewer  
  EAW56188 (Get FASTA)   NCBI Sequence Viewer  
  EAW56189 (Get FASTA)   NCBI Sequence Viewer  
  EAW56190 (Get FASTA)   NCBI Sequence Viewer  
  EAW56191 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000368030
  ENSP00000368030.5
  ENSP00000368031
  ENSP00000368031.3
  ENSP00000439290
  ENSP00000439290.1
1 to 30 of 31 rows
1 to 5 of 14 rows
1 to 5 of 14 rows
RefSeq Acc Id: NP_060658   ⟸   NM_018188
- Peptide Label: isoform 1
- UniProtKB: Q8N275 (UniProtKB/Swiss-Prot),   Q5SV23 (UniProtKB/Swiss-Prot),   G3V1I6 (UniProtKB/Swiss-Prot),   D2K8Q1 (UniProtKB/Swiss-Prot),   B3KPB3 (UniProtKB/Swiss-Prot),   Q96A50 (UniProtKB/Swiss-Prot),   Q9NVI7 (UniProtKB/Swiss-Prot),   Q96T67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164006   ⟸   NM_001170535
- Peptide Label: isoform 2
- UniProtKB: Q96T67 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001164007   ⟸   NM_001170536
- Peptide Label: isoform 3
- UniProtKB: Q96T67 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000383631   ⟸   ENST00000400830
Ensembl Acc Id: ENSP00000368031   ⟸   ENST00000378756
Name Modeler Protein Id AA Range Protein Structure
AF-Q9NVI7-F1-model_v2 AlphaFold Q9NVI7 1-634 view protein structure

RGD ID:6784655
Promoter ID:HG_KWN:190
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000378759,   NM_001170535,   NM_001170536,   NM_018188
Position:
Human AssemblyChrPosition (strand)Source
Build 3611,436,811 - 1,437,311 (+)MPROMDB
RGD ID:6853740
Promoter ID:EPDNEW_H35
Type:initiation region
Name:ATAD3A_1
Description:ATPase family, AAA domain containing 3A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811,512,162 - 1,512,222EPDNEW


1 to 40 of 43 rows
Database
Acc Id
Source(s)
COSMIC ATAD3A COSMIC
Ensembl Genes ENSG00000197785 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000378755 ENTREZGENE
  ENST00000378755.9 UniProtKB/Swiss-Prot
  ENST00000378756 ENTREZGENE
  ENST00000378756.8 UniProtKB/Swiss-Prot
  ENST00000536055 ENTREZGENE
  ENST00000536055.6 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
GTEx ENSG00000197785 GTEx
HGNC ID HGNC:25567 ENTREZGENE
Human Proteome Map ATAD3A Human Proteome Map
InterPro AAA+_ATPase UniProtKB/Swiss-Prot
  ATPase_AAA_core UniProtKB/Swiss-Prot
  DUF3523 UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report hsa:55210 UniProtKB/Swiss-Prot
NCBI Gene 55210 ENTREZGENE
OMIM 612316 OMIM
PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 3A UniProtKB/Swiss-Prot
  PTHR23075 UniProtKB/Swiss-Prot
Pfam AAA UniProtKB/Swiss-Prot
  DUF3523 UniProtKB/Swiss-Prot
PharmGKB PA134872099 PharmGKB
SMART AAA UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt ATD3A_HUMAN UniProtKB/Swiss-Prot
  B3KPB3 ENTREZGENE
  D2K8Q1 ENTREZGENE
  G3V1I6 ENTREZGENE
  H0Y2W2_HUMAN UniProtKB/TrEMBL
  Q5SV16_HUMAN UniProtKB/TrEMBL
  Q5SV23 ENTREZGENE
  Q8N275 ENTREZGENE
  Q96A50 ENTREZGENE
  Q96T67 ENTREZGENE, UniProtKB/TrEMBL
  Q9NVI7 ENTREZGENE
UniProt Secondary B3KPB3 UniProtKB/Swiss-Prot
  D2K8Q1 UniProtKB/Swiss-Prot
  G3V1I6 UniProtKB/Swiss-Prot
1 to 40 of 43 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-22 ATAD3A  ATPase family AAA domain containing 3A  ATAD3A  ATPase family, AAA domain containing 3A  Symbol and/or name change 5135510 APPROVED