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Gene Ontology Annotations Click to see Annotation Detail View
Cellular Component Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | NURF complex | | ISO | UniProtKB:Q9UGU5 | 2290270 | | MGI | GO_REF:0000096, MGI:4834177 | |
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Gene Ontology Annotations Click to see Annotation Detail View
Cellular Component Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | NURF complex | | ISO | UniProtKB:Q9UGU5 | 2290270 | | MGI | GO_REF:0000096, MGI:4834177 | |
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PMID:8889548 | PMID:10349636 | PMID:10725249 | PMID:11042159 | PMID:11076861 | PMID:12477932 | PMID:12520002 | PMID:14610273 | PMID:16141072 | PMID:16141073 | PMID:18287559 | PMID:18799693 |
PMID:20412781 | PMID:20511232 | PMID:20657840 | PMID:20932939 | PMID:21677750 | PMID:24952961 | PMID:26919559 |
Hmgxb4 (Mus musculus - house mouse) |
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HMGXB4 (Homo sapiens - human) |
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Hmgxb4 (Rattus norvegicus - Norway rat) |
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Hmgxb4 (Chinchilla lanigera - long-tailed chinchilla) |
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HMGXB4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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HMGXB4 (Canis lupus familiaris - dog) |
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Hmgxb4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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HMGXB4 (Sus scrofa - pig) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
HMGXB4 (Chlorocebus sabaeus - African green monkey) |
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Hmgxb4 (Heterocephalus glaber - naked mole-rat) |
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RH136122 |
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D8Mit180 |
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The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
RefSeq Acc Id: | ENSMUST00000041759 ⟹ ENSMUSP00000045126 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000109940 ⟹ ENSMUSP00000105566 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000129391 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000133585 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000134126 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000145919 ⟹ ENSMUSP00000133586 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000151062 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000211863 ⟹ ENSMUSP00000148561 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENSMUST00000212372 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001316753 ⟹ NP_001303682 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001316754 ⟹ NP_001303683 | ||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_178017 ⟹ NP_821136 | ||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006531362 ⟹ XP_006531425 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_006531364 ⟹ XP_006531427 | ||||||||||||
RefSeq Status: | |||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NP_821136 ⟸ NM_178017 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q80Y32 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_006531425 ⟸ XM_006531362 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | XP_006531427 ⟸ XM_006531364 |
- Peptide Label: | isoform X1 |
- Sequence: |
RefSeq Acc Id: | NP_001303682 ⟸ NM_001316753 |
- Peptide Label: | isoform 2 |
- UniProtKB: | Q80Y32 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001303683 ⟸ NM_001316754 |
- Peptide Label: | isoform 3 |
- UniProtKB: | Q80Y32 (UniProtKB/TrEMBL), Q8BTT5 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | ENSMUSP00000148561 ⟸ ENSMUST00000211863 |
RefSeq Acc Id: | ENSMUSP00000133586 ⟸ ENSMUST00000145919 |
RefSeq Acc Id: | ENSMUSP00000105566 ⟸ ENSMUST00000109940 |
RefSeq Acc Id: | ENSMUSP00000045126 ⟸ ENSMUST00000041759 |
RGD ID: | 8667497 | ||||||||
Promoter ID: | EPDNEW_M11780 | ||||||||
Type: | multiple initiation site | ||||||||
Name: | Hmgxb4_1 | ||||||||
Description: | Mus musculus HMG box domain containing 4 , transcript variant3, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M11781 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 8667499 | ||||||||
Promoter ID: | EPDNEW_M11781 | ||||||||
Type: | initiation region | ||||||||
Name: | Hmgxb4_2 | ||||||||
Description: | Mus musculus HMG box domain containing 4 , transcript variant3, mRNA. | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_M11780 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6843322 | ||||||||
Promoter ID: | MM_KWN:54892 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | 3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, ES_Cell, Lung, MEF_B4, Spleen | ||||||||
Transcripts: | OTTMUST00000042001, OTTMUST00000042002, OTTMUST00000042004, OTTMUST00000042005, OTTMUST00000042006, UC009MGW.1 | ||||||||
Position: |
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RGD ID: | 6843314 | ||||||||
Promoter ID: | MM_KWN:54893 | ||||||||
Type: | Non-CpG | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | ES_Cell | ||||||||
Transcripts: | UC009MGZ.1 | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | MGI:1918073 | AgrOrtholog |
Ensembl Genes | ENSMUSG00000034518 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
Ensembl Protein | ENSMUSP00000045126 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUSP00000105566 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUSP00000133586 | UniProtKB/TrEMBL | |
ENSMUSP00000148561 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENSMUST00000041759 | ENTREZGENE, UniProtKB/TrEMBL |
ENSMUST00000109940 | ENTREZGENE, UniProtKB/TrEMBL | |
ENSMUST00000145919 | UniProtKB/TrEMBL | |
ENSMUST00000211863 | UniProtKB/TrEMBL | |
Gene3D-CATH | 1.10.30.10 | UniProtKB/TrEMBL |
InterPro | DUF4171 | UniProtKB/TrEMBL |
HMG_box_dom_sf | UniProtKB/TrEMBL | |
HMG_superfamily | UniProtKB/TrEMBL | |
HMGXB4 | UniProtKB/TrEMBL | |
KEGG Report | mmu:70823 | UniProtKB/TrEMBL |
MGD | MGI:1918073 | ENTREZGENE |
NCBI Gene | 70823 | ENTREZGENE |
PANTHER | PTHR46584 | UniProtKB/TrEMBL |
Pfam | DUF4171 | UniProtKB/TrEMBL |
HMG_box | UniProtKB/TrEMBL | |
PhenoGen | Hmgxb4 | PhenoGen |
PROSITE | HMG_BOX_2 | UniProtKB/TrEMBL |
SMART | HMG | UniProtKB/TrEMBL |
Superfamily-SCOP | HMG-box | UniProtKB/TrEMBL |
UniGene | Mm.261739 | ENTREZGENE |
UniProt | A0A1D5RLZ2_MOUSE | UniProtKB/TrEMBL |
G3UX81_MOUSE | UniProtKB/TrEMBL | |
Q3U0Q0_MOUSE | UniProtKB/TrEMBL | |
Q80Y32 | ENTREZGENE, UniProtKB/TrEMBL | |
Q8BTT5 | ENTREZGENE, UniProtKB/TrEMBL | |
Q8CGJ8_MOUSE | UniProtKB/TrEMBL | |
Q8R579_MOUSE | UniProtKB/TrEMBL | |
Q9D639_MOUSE | UniProtKB/TrEMBL |