HMGXB4 (HMG-box containing 4) - Rat Genome Database

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Gene: HMGXB4 (HMG-box containing 4) Chlorocebus sabaeus
Analyze
Symbol: HMGXB4
Name: HMG-box containing 4
RGD ID: 18464562
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN NURF complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HMG domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,020,514 - 18,058,769 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1918,020,614 - 18,060,515 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)
NURF complex  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
HMGXB4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11918,020,514 - 18,058,769 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1918,020,614 - 18,060,515 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,850 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
HMGXB4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,241,536 - 35,295,807 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,257,452 - 35,295,807 (+)EnsemblGRCh38hg38GRCh38
GRCh372235,653,486 - 35,691,800 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,983,489 - 34,021,800 (+)NCBINCBI36Build 36hg18NCBI36
Build 342233,978,042 - 34,016,353NCBI
Celera2219,456,143 - 19,494,488 (+)NCBICelera
Cytogenetic Map22q12.3NCBI
HuRef2218,614,585 - 18,652,914 (+)NCBIHuRef
CHM1_12235,611,632 - 35,649,991 (+)NCBICHM1_1
T2T-CHM13v2.02235,700,425 - 35,753,698 (+)NCBIT2T-CHM13v2.0
Hmgxb4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39875,720,305 - 75,758,606 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl875,719,984 - 75,758,606 (+)EnsemblGRCm39 Ensembl
GRCm38874,993,650 - 75,031,978 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl874,993,356 - 75,031,978 (+)EnsemblGRCm38mm10GRCm38
MGSCv37877,517,602 - 77,555,871 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36877,889,775 - 77,928,044 (+)NCBIMGSCv36mm8
Celera879,293,778 - 79,332,024 (+)NCBICelera
Cytogenetic Map8C1NCBI
cM Map835.57NCBI
Hmgxb4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81913,370,559 - 13,409,306 (+)NCBIGRCr8
mRatBN7.21913,364,741 - 13,403,563 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1913,364,807 - 13,403,563 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1913,339,216 - 13,377,847 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01914,104,482 - 14,143,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01913,385,453 - 13,423,956 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01914,352,644 - 14,390,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1914,352,411 - 14,390,478 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01925,465,000 - 25,503,030 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41913,849,919 - 13,888,570 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11913,854,655 - 13,891,682 (+)NCBI
Celera1913,234,389 - 13,272,937 (+)NCBICelera
Cytogenetic Map19p11NCBI
Hmgxb4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540543,062,093 - 43,091,784 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540543,058,768 - 43,088,592 (+)NCBIChiLan1.0ChiLan1.0
HMGXB4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22345,198,137 - 45,236,461 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12247,894,830 - 47,933,154 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02216,264,268 - 16,302,597 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12234,108,030 - 34,146,282 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2234,112,944 - 34,144,132 (+)Ensemblpanpan1.1panPan2
HMGXB4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11028,826,760 - 28,857,473 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1028,828,362 - 28,857,458 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1028,763,052 - 28,793,717 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01029,613,371 - 29,644,058 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1029,613,377 - 29,644,081 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11029,336,946 - 29,367,598 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01029,645,744 - 29,676,406 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01029,825,457 - 29,856,123 (-)NCBIUU_Cfam_GSD_1.0
Hmgxb4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494512,096,746 - 12,129,409 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364925,109,271 - 5,135,186 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364925,106,230 - 5,139,784 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMGXB4
(Sus scrofa - pig)
No map positions available.
Hmgxb4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624750382,057 - 409,259 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 16 21
Low 20 20 39
Below cutoff

Sequence


RefSeq Acc Id: ENSCSAT00000006273   ⟹   ENSCSAP00000004480
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1918,020,614 - 18,060,515 (+)Ensembl
RefSeq Acc Id: XM_007975588   ⟹   XP_007973779
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11918,020,514 - 18,058,769 (+)NCBI
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,850 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975589   ⟹   XP_007973780
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11918,020,568 - 18,058,769 (+)NCBI
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,819 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975590   ⟹   XP_007973781
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11918,021,001 - 18,058,769 (+)NCBI
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,699 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975591   ⟹   XP_007973782
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11918,020,603 - 18,058,769 (+)NCBI
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,812 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975592   ⟹   XP_007973783
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11918,020,632 - 18,058,769 (+)NCBI
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,808 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007975593   ⟹   XP_007973784
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11918,021,044 - 18,058,769 (+)NCBI
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,382 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038007529   ⟹   XP_037863457
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045107,890,766 - 107,929,699 (-)NCBI
RefSeq Acc Id: XP_007973779   ⟸   XM_007975588
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007973780   ⟸   XM_007975589
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R791 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007973782   ⟸   XM_007975591
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007973783   ⟸   XM_007975592
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007973781   ⟸   XM_007975590
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R791 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007973784   ⟸   XM_007975593
- Peptide Label: isoform X1
RefSeq Acc Id: ENSCSAP00000004480   ⟸   ENSCSAT00000006273
RefSeq Acc Id: XP_037863457   ⟸   XM_038007529
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008220 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006273.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro DUF4171 UniProtKB/TrEMBL
  HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  HMGXB4 UniProtKB/TrEMBL
  HMGXB4_HMG-box UniProtKB/TrEMBL
NCBI Gene HMGXB4 ENTREZGENE
PANTHER HMG DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  PTHR46584 UniProtKB/TrEMBL
Pfam DUF4171 UniProtKB/TrEMBL
  HMG_box UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt A0A0D9R791 ENTREZGENE, UniProtKB/TrEMBL