Cdc14a (CDC14 cell division cycle 14A) - Rat Genome Database

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Gene: Cdc14a (CDC14 cell division cycle 14A) Mus musculus
Analyze
Symbol: Cdc14a
Name: CDC14 cell division cycle 14A
RGD ID: 1312212
MGI Page MGI
Description: Predicted to enable protein serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Involved in sensory perception of sound. Located in kinociliary basal body and stereocilium tip. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and sensory organ. Used to study autosomal recessive nonsyndromic deafness 32. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 32. Orthologous to human CDC14A (cell division cycle 14A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A830059A17Rik; Cdc14; CDC14 cell division cycle 14 homolog A; CDC14a1; CDC14A2; dual specificity protein phosphatase CDC14A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,066,202 - 116,222,390 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,066,202 - 116,222,394 (-)EnsemblGRCm39 Ensembl
GRCm383116,272,553 - 116,428,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,272,553 - 116,428,745 (-)EnsemblGRCm38mm10GRCm38
MGSCv373115,975,471 - 116,126,950 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,608,926 - 116,759,661 (-)NCBIMGSCv36mm8
MGSCv363116,264,557 - 116,416,036 (-)NCBIMGSCv36mm8
Celera3122,716,884 - 122,851,142 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
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Original Reference(s)
Cdc14aMouseautosomal recessive nonsyndromic deafness 32  ISOCDC14A (Homo sapiens)8554872ClinVar more ...ClinVarPMID:12634867 more ...
Cdc14aMousegenetic disease  ISOCDC14A (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:25741868 and PMID:28492532
Cdc14aMousemaple syrup urine disease  ISOCDC14A (Homo sapiens)8554872ClinVar Annotator: match by term: Maple syrup urine diseaseClinVarPMID:28492532
Cdc14aMousesensorineural hearing loss  ISOCDC14A (Homo sapiens)8554872ClinVar Annotator: match by term: Sensorineural hearing loss disorderClinVarPMID:25741868
Object Symbol
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Term
Qualifier
Evidence
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Reference
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Original Reference(s)
Cdc14aMouseautosomal recessive nonsyndromic deafness 32  ISOCDC14A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27259055 and PMID:29293958
Cdc14aMouseDeafness  ISOCDC14A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29293958
Cdc14aMousemale infertility  ISOCDC14A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29293958
Cdc14aMouseoligospermia  ISOCDC14A (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29293958
Object Symbol
Species
Term
Qualifier
Evidence
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Reference
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Original Reference(s)
Cdc14aMouseautosomal recessive nonsyndromic deafness 32  IAGP 13592920OMIM:608653MouseDO 
Object Symbol
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Original Reference(s)
Cdc14aMouseautosomal recessive nonsyndromic deafness 32  ISOCDC14A (Homo sapiens)7240710 OMIM 

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Object Symbol
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Original Reference(s)
Cdc14aMouse1,2-dimethylhydrazine affects expressionEXP 64804641 and 2-Dimethylhydrazine affects the expression of CDC14A mRNACTDPMID:22206623
Cdc14aMouse17beta-estradiol multiple interactionsISOCdc14a (Rattus norvegicus)6480464[bisphenol A co-treated with Estradiol] results in increased expression of CDC14A mRNACTDPMID:26496021
Cdc14aMouse17beta-estradiol multiple interactionsISOCDC14A (Homo sapiens)6480464Estradiol promotes the reaction [CDC14A protein binds to ESR1 protein]CTDPMID:27156127
Cdc14aMouse2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCdc14a (Rattus norvegicus)6480464Tetrachlorodibenzodioxin affects the expression of CDC14A mRNACTDPMID:22298810 and PMID:32109520
Cdc14aMouse2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCdc14a (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in decreased expression of CDC14A mRNACTDPMID:33387578
Cdc14aMouse2,3,7,8-tetrachlorodibenzodioxine increases expressionISOCdc14a (Rattus norvegicus)6480464Tetrachlorodibenzodioxin results in increased expression of CDC14A mRNACTDPMID:34747641
Cdc14aMouse4,4'-sulfonyldiphenol affects methylationEXP 6480464bisphenol S affects the methylation of CDC14A geneCTDPMID:31683443
Cdc14aMouseacetamide increases expressionISOCdc14a (Rattus norvegicus)6480464acetamide results in increased expression of CDC14A mRNACTDPMID:31881176
Cdc14aMousearsenite(3-) multiple interactionsISOCDC14A (Homo sapiens)6480464arsenite inhibits the reaction [G3BP1 protein binds to CDC14A mRNA]CTDPMID:32406909
Cdc14aMousebenzo[a]pyrene decreases expressionEXP 6480464Benzo(a)pyrene results in decreased expression of CDC14A mRNACTDPMID:19770486
Cdc14aMousebenzo[a]pyrene decreases expressionISOCDC14A (Homo sapiens)6480464Benzo(a)pyrene results in decreased expression of CDC14A mRNACTDPMID:22316170
Cdc14aMousebisphenol A multiple interactionsISOCdc14a (Rattus norvegicus)6480464[bisphenol A co-treated with Estradiol] results in increased expression of CDC14A mRNA and [bisphenol A co-treated with tributyltin] results in decreased expression of CDC14A mRNACTDPMID:26496021 and PMID:31129395
Cdc14aMousebisphenol A increases methylationISOCDC14A (Homo sapiens)6480464bisphenol A results in increased methylation of CDC14A geneCTDPMID:31601247
Cdc14aMousebisphenol A decreases expressionISOCdc14a (Rattus norvegicus)6480464bisphenol A results in decreased expression of CDC14A mRNACTDPMID:30816183 and PMID:32528016
Cdc14aMousebisphenol A affects expressionISOCdc14a (Rattus norvegicus)6480464bisphenol A affects the expression of CDC14A mRNACTDPMID:25181051
Cdc14aMousebisphenol AF increases expressionISOCdc14a (Rattus norvegicus)6480464bisphenol AF results in increased expression of CDC14A mRNACTDPMID:27567155
Cdc14aMousecapsaicin increases expressionISOCdc14a (Rattus norvegicus)6480464Capsaicin results in increased expression of CDC14A mRNACTDPMID:20349343
Cdc14aMousecarbon nanotube decreases expressionISOCDC14A (Homo sapiens)6480464Nanotubes and Carbon results in decreased expression of CDC14A mRNACTDPMID:15585362
Cdc14aMousecarbon nanotube decreases expressionEXP 6480464Nanotubes more ...CTDPMID:25554681
Cdc14aMouseCGP 52608 multiple interactionsISOCDC14A (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to CDC14A gene]CTDPMID:28238834

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Biological Process
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Original Reference(s)
Cdc14aMousecell division involved_inIEAUniProtKB-KW:KW-01322290270 UniProtGO_REF:0000043
Cdc14aMousechromatin remodeling involved_inIEAGO:0140791 and GO:01407932290270 GOCGO_REF:0000108
Cdc14aMousecilium assembly involved_inIBAPANTHER:PTN001155233 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMousemicrotubule cytoskeleton organization involved_inIBAPANTHER:PTN000596948 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMousepositive regulation of cytokinesis involved_inIBAPANTHER:PTN000596948 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMouseregulation of exit from mitosis involved_inIBAPANTHER:PTN000596948 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMouseregulation of transcription by RNA polymerase II involved_inIEAGO:01800042290270 GOCGO_REF:0000108
Cdc14aMousesensory perception of sound involved_inISOUniProtKB:Q9UNH52290270 GO_CentralGO_REF:0000119
Cdc14aMousesensory perception of sound involved_inIMP 2290270 PMID:29293958UniProtPMID:29293958
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Cellular Component
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Original Reference(s)
Cdc14aMousecentrosome located_inIEAUniProtKB-SubCell:SL-00482290270 UniProtGO_REF:0000044
Cdc14aMousecentrosome located_inISOUniProtKB:Q9UNH52290270 GO_CentralGO_REF:0000119
Cdc14aMousecytoplasm is_active_inIBAPANTHER:PTN000596946 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMousecytosol located_inIEAUniProtKB:Q9UNH5 and ensembl:ENSP000003367392290270 EnsemblGO_REF:0000107
Cdc14aMousecytosol located_inISOUniProtKB:Q9UNH52290270 GO_CentralGO_REF:0000119
Cdc14aMouseendoplasmic reticulum located_inIEAUniProtKB:Q9UNH5 and ensembl:ENSP000003367392290270 EnsemblGO_REF:0000107
Cdc14aMousekinociliary basal body located_inIDA 2290270 PMID:29293958UniProtPMID:29293958
Cdc14aMousekinocilium located_inIDA 2290270 PMID:29293958UniProtPMID:29293958
Cdc14aMousemitotic spindle is_active_inIBAPANTHER:PTN000596949 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMousenuclear body located_inISOUniProtKB:Q9UNH52290270 GO_CentralGO_REF:0000119
Cdc14aMousenucleolus is_active_inIBAPANTHER:PTN000596949 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMousenucleoplasm located_inIEAUniProtKB:Q9UNH5 and ensembl:ENSP000003367392290270 EnsemblGO_REF:0000107
Cdc14aMousenucleoplasm located_inISOUniProtKB:Q9UNH52290270 GO_CentralGO_REF:0000119
Cdc14aMousespindle pole located_inIEAUniProtKB-SubCell:SL-04482290270 UniProtGO_REF:0000044
Cdc14aMousespindle pole is_active_inIBAPANTHER:PTN000596949 and ZFIN:ZDB-GENE-040426-12142290270 GO_CentralGO_REF:0000033
Cdc14aMousestereocilium tip located_inIDA 2290270 PMID:29293958UniProtPMID:29293958
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Molecular Function
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Object Symbol
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Original Reference(s)
Cdc14aMousecalmodulin-dependent protein phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMousehistone H2AXS140 phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMousehistone H2AXY142 phosphatase activity enablesIEAEC:3.1.3.482290270 UniProtGO_REF:0000003
Cdc14aMouseMAP kinase serine/threonine phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMousemyosin phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMousenon-membrane spanning protein tyrosine phosphatase activity enablesIEAEC:3.1.3.482290270 UniProtGO_REF:0000003
Cdc14aMouseprotein binding enablesISOUniProtKB:Q9UBK99068941 PMID:16221885HGNC-UCLPMID:16221885
Cdc14aMouseprotein binding enablesISOUniProtKB:Q8N5M1 and UniProtKB:Q9NWQ99068941 PMID:32296183IntActPMID:32296183
Cdc14aMouseprotein serine/threonine phosphatase activity enablesIBAPANTHER:PTN000596949 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMouseprotein tyrosine phosphatase activity enablesIBAPANTHER:PTN000596946 more ...2290270 GO_CentralGO_REF:0000033
Cdc14aMouseprotein tyrosine phosphatase activity, metal-dependent enablesIEAEC:3.1.3.482290270 UniProtGO_REF:0000003
Cdc14aMouseRNA polymerase II CTD heptapeptide repeat S2 phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMouseRNA polymerase II CTD heptapeptide repeat S5 phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMouseRNA polymerase II CTD heptapeptide repeat S7 phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMouseRNA polymerase II CTD heptapeptide repeat T4 phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
Cdc14aMouseRNA polymerase II CTD heptapeptide repeat Y1 phosphatase activity enablesIEAEC:3.1.3.162290270 UniProtGO_REF:0000003
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RGD Manual Annotations


  
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Original Reference(s)
Cdc14aMouseRNA polymerase II transcription pathway   ISOCDC14A (Homo sapiens)9681737pol II carboxyl-terminal domain (CTD)RGD 
Cdc14aMouseRNA polymerase II transcription pathway   ISOCDC14A (Homo sapiens)9681738pol II carboxyl-terminal domain (CTD)RGD 

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
Cdc14aMousecell cycle pathway, mitotic  IEA 6907045 KEGGmmu:04110
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Original Reference(s)
Cdc14aMouseabnormal cochlear hair cell stereociliary bundle morphology  IAGP 5509061 MGIPMID:32679235
Cdc14aMouseabnormal sperm head morphology  IAGP 5509061 MGIPMID:32679235
Cdc14aMouseabnormal sperm nucleus morphology  IAGP 5509061 MGIPMID:32679235
Cdc14aMouseabsent distortion product otoacoustic emissions  IAGP 5509061 MGIPMID:29293958
Cdc14aMouseabsent sperm head  IAGP 5509061 MGIPMID:32679235
Cdc14aMousearrest of male meiosis  IAGP 5509061 MGIPMID:32679235
Cdc14aMouseasthenozoospermia  IAGP 5509061 MGIPMID:32679235
Cdc14aMousecataract  IEA 5509061 MGI 
Cdc14aMousecochlear hair cell degeneration  IAGP 5509061 MGIPMID:29293958
Cdc14aMousecochlear inner hair cell degeneration  IAGP 5509061 MGIPMID:29293958
Cdc14aMousecochlear outer hair cell degeneration  IAGP 5509061 MGIPMID:29293958
Cdc14aMousecoiled sperm flagellum  IAGP 5509061 MGIPMID:32679235
Cdc14aMousedeafness  IAGP 5509061 MGIPMID:29293958
Cdc14aMousedecreased cochlear hair cell number  IAGP 5509061 MGIPMID:32679235
Cdc14aMousedecreased male germ cell number  IAGP 5509061 MGIPMID:32679235
Cdc14aMousedecreased sperm progressive motility  IAGP 5509061 MGIPMID:32679235
Cdc14aMousefused inner hair cell stereocilia  IAGP 5509061 MGIPMID:29293958
Cdc14aMousefused outer hair cell stereocilia  IAGP 5509061 MGIPMID:29293958
Cdc14aMouseimpaired hearing  IAGP 5509061 MGIPMID:32679235
Cdc14aMouseincreased or absent threshold for auditory brainstem response  IAGP 5509061 MGIPMID:32679235
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#
Reference Title
Reference Citation
1. Updating the RNA polymerase CTD code: adding gene-specific layers. Egloff S, etal., Trends Genet. 2012 Jul;28(7):333-41. doi: 10.1016/j.tig.2012.03.007. Epub 2012 May 21.
2. The writers, readers, and functions of the RNA polymerase II C-terminal domain code. Jeronimo C, etal., Chem Rev. 2013 Nov 13;113(11):8491-522. doi: 10.1021/cr4001397. Epub 2013 Jul 10.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18481975  
PMID:19270517   PMID:20720150   PMID:21873635   PMID:21931791   PMID:23375831   PMID:23676271   PMID:24194600   PMID:26283732   PMID:29293958   PMID:31545409   PMID:32679235   PMID:36326833  
PMID:38355793  



Cdc14a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,066,202 - 116,222,390 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,066,202 - 116,222,394 (-)EnsemblGRCm39 Ensembl
GRCm383116,272,553 - 116,428,741 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,272,553 - 116,428,745 (-)EnsemblGRCm38mm10GRCm38
MGSCv373115,975,471 - 116,126,950 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,608,926 - 116,759,661 (-)NCBIMGSCv36mm8
MGSCv363116,264,557 - 116,416,036 (-)NCBIMGSCv36mm8
Celera3122,716,884 - 122,851,142 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.24NCBI
CDC14A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,345,001 - 100,520,277 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,325,629 - 100,520,277 (+)EnsemblGRCh38hg38GRCh38
GRCh371100,810,557 - 100,985,833 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,590,611 - 100,758,421 (+)NCBINCBI36Build 36hg18NCBI36
Celera199,079,156 - 99,246,987 (+)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,941,758 - 99,109,581 (+)NCBIHuRef
CHM1_11100,934,209 - 101,101,908 (+)NCBICHM1_1
T2T-CHM13v2.01100,192,980 - 100,368,314 (+)NCBIT2T-CHM13v2.0
Cdc14a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82206,910,475 - 207,070,537 (-)NCBIGRCr8
mRatBN7.22204,225,540 - 204,380,927 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,225,540 - 204,380,927 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2211,889,131 - 212,044,352 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02209,783,936 - 209,945,711 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,600,985 - 204,762,781 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,302,577 - 219,458,345 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,302,577 - 219,458,271 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,754,786 - 237,915,834 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,495,540 - 212,652,895 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12212,459,352 - 212,615,522 (-)NCBI
Celera2196,721,585 - 196,876,703 (-)NCBICelera
Cytogenetic Map2q42NCBI
Cdc14a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554355,099,107 - 5,248,679 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554355,099,576 - 5,230,252 (+)NCBIChiLan1.0ChiLan1.0
CDC14A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,507,194 - 126,677,627 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11125,665,337 - 125,835,694 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01103,002,408 - 103,178,622 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11101,716,711 - 101,892,619 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1101,724,213 - 101,892,619 (+)Ensemblpanpan1.1panPan2
CDC14A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,429,675 - 49,678,376 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,497,939 - 49,693,665 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha652,057,984 - 52,349,812 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0649,861,063 - 50,019,311 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl649,861,010 - 50,042,321 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,424,649 - 49,717,496 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,404,432 - 49,696,446 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0649,834,388 - 50,126,448 (-)NCBIUU_Cfam_GSD_1.0
LOC101972535
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,673,903 - 110,806,831 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936748479,503 - 623,126 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936748479,026 - 612,554 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC14A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,635,861 - 117,805,254 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,635,849 - 117,804,568 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24129,230,515 - 129,319,122 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC14A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12032,822,748 - 32,987,739 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2032,822,746 - 32,986,718 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603825,071,050 - 25,235,874 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc14a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248573,245,934 - 3,417,199 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248573,246,027 - 3,416,536 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Cdc14a
9432 total Variants

Predicted Target Of
Summary Value
Count of predictions:2075
Count of miRNA genes:607
Interacting mature miRNAs:795
Transcripts:ENSMUST00000090464, ENSMUST00000106491, ENSMUST00000127704, ENSMUST00000136994, ENSMUST00000148857
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1301904Iba2_minduction of brown adipocytes 2 (mouse)Not determined382147043116147184Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse

1 to 10 of 42 rows
Cdc14a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,273,336 - 116,274,106UniSTSGRCm38
MGSCv373115,976,254 - 115,977,024UniSTSGRCm37
Cytogenetic Map3G1UniSTS
cM Map3 UniSTS
UniSTS:234810  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,273,743 - 116,273,942UniSTSGRCm38
MGSCv373115,976,661 - 115,976,860UniSTSGRCm37
Cytogenetic Map3G1UniSTS






1 to 30 of 32 rows
RefSeq Transcripts NM_001080818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001173553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001378994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017319562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036163082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004941317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC165364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK043956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK050885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC072644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01028638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01028650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01028653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01028659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01028671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01199151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CAAA01199417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 32 rows

Ensembl Acc Id: ENSMUST00000090464   ⟹   ENSMUSP00000087950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,066,202 - 116,217,681 (-)Ensembl
GRCm38.p6 Ensembl3116,272,553 - 116,424,032 (-)Ensembl
Ensembl Acc Id: ENSMUST00000106491   ⟹   ENSMUSP00000102100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,066,202 - 116,217,635 (-)Ensembl
GRCm38.p6 Ensembl3116,272,553 - 116,423,986 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,119,688 - 116,217,681 (-)Ensembl
GRCm38.p6 Ensembl3116,326,039 - 116,424,032 (-)Ensembl
Ensembl Acc Id: ENSMUST00000136994
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,197,757 - 116,217,544 (-)Ensembl
GRCm38.p6 Ensembl3116,404,108 - 116,423,895 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,193,835 - 116,216,673 (-)Ensembl
GRCm38.p6 Ensembl3116,400,186 - 116,423,024 (-)Ensembl
Ensembl Acc Id: ENSMUST00000197830   ⟹   ENSMUSP00000142479
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,115,859 - 116,216,298 (-)Ensembl
GRCm38.p6 Ensembl3116,322,210 - 116,422,649 (-)Ensembl
Ensembl Acc Id: ENSMUST00000199454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,197,036 - 116,199,137 (-)Ensembl
GRCm38.p6 Ensembl3116,403,387 - 116,405,488 (-)Ensembl
Ensembl Acc Id: ENSMUST00000239145   ⟹   ENSMUSP00000159189
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,087,173 - 116,222,394 (-)Ensembl
GRCm38.p6 Ensembl3116,293,524 - 116,428,745 (-)Ensembl
RefSeq Acc Id: NM_001080818   ⟹   NP_001074287
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,066,202 - 116,217,681 (-)NCBI
GRCm383116,272,553 - 116,424,032 (-)NCBI
MGSCv373115,975,471 - 116,126,950 (-)RGD
Celera3122,716,884 - 122,851,142 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001173553   ⟹   NP_001167024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,066,202 - 116,217,681 (-)NCBI
GRCm383116,272,553 - 116,424,032 (-)NCBI
MGSCv373115,975,471 - 116,126,950 (-)RGD
Celera3122,716,884 - 122,851,142 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001355646   ⟹   NP_001342575
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,066,202 - 116,147,893 (-)NCBI
GRCm383116,272,553 - 116,354,244 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378993   ⟹   NP_001365922
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,087,172 - 116,217,721 (-)NCBI
GRCm383116,293,523 - 116,424,072 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001378994   ⟹   NP_001365923
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,087,172 - 116,222,390 (-)NCBI
GRCm383116,293,523 - 116,428,741 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017319562   ⟹   XP_017175051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,087,177 - 116,151,442 (-)NCBI
GRCm383116,293,523 - 116,357,794 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252597   ⟹   XP_030108457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,087,177 - 116,217,714 (-)NCBI
GRCm383116,293,523 - 116,424,068 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163079   ⟹   XP_036018972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,087,172 - 116,217,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163080   ⟹   XP_036018973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,066,202 - 116,217,719 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163081   ⟹   XP_036018974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,087,177 - 116,217,714 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036163082   ⟹   XP_036018975
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,067,253 - 116,217,605 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941316
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,066,202 - 116,217,724 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004941317
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,066,202 - 116,217,723 (-)NCBI
Sequence:
1 to 5 of 15 rows
1 to 5 of 15 rows
RefSeq Acc Id: NP_001074287   ⟸   NM_001080818
- Peptide Label: isoform 1
- UniProtKB: Q8BZ66 (UniProtKB/Swiss-Prot),   Q6GQT0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001167024   ⟸   NM_001173553
- Peptide Label: isoform 2
- UniProtKB: Q6GQT0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175051   ⟸   XM_017319562
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: NP_001342575   ⟸   NM_001355646
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030108457   ⟸   XM_030252597
- Peptide Label: isoform X3
Name Modeler Protein Id AA Range Protein Structure
AF-Q6GQT0-F1-model_v2 AlphaFold Q6GQT0 1-603 view protein structure

RGD ID:6833559
Promoter ID:MM_KWN:35887
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000090464,   ENSMUST00000106491,   OTTMUST00000072811,   OTTMUST00000072812,   OTTMUST00000072813
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363116,126,741 - 116,127,947 (-)MPROMDB
RGD ID:6882200
Promoter ID:EPDNEW_M4536
Type:initiation region
Name:Cdc14a_1
Description:Mus musculus CDC14 cell division cycle 14A , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383116,423,974 - 116,424,034EPDNEW


1 to 33 of 33 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000033502 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000090464 ENTREZGENE
  ENSMUST00000090464.7 UniProtKB/Swiss-Prot
  ENSMUST00000106491 ENTREZGENE
  ENSMUST00000106491.7 UniProtKB/Swiss-Prot
  ENSMUST00000239145 ENTREZGENE
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot
InterPro CDC14_C UniProtKB/Swiss-Prot
  DSPn UniProtKB/Swiss-Prot
  Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot
  PTP UniProtKB/Swiss-Prot
  Tyr_Pase_AS UniProtKB/Swiss-Prot
  Tyr_Pase_cat UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/Swiss-Prot
KEGG Report mmu:229776 UniProtKB/Swiss-Prot
MGD MGI:2442676 ENTREZGENE
NCBI Gene 229776 ENTREZGENE
PANTHER TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE UniProtKB/Swiss-Prot
Pfam DSPn UniProtKB/Swiss-Prot
  Tc-R-P UniProtKB/Swiss-Prot
PhenoGen Cdc14a PhenoGen
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot
  TYR_PHOSPHATASE_DUAL UniProtKB/Swiss-Prot
SMART DSPc UniProtKB/Swiss-Prot
  PTPc_motif UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot
UniProt A0A0G2JDS3_MOUSE UniProtKB/TrEMBL
  A0A5F8MPZ4 ENTREZGENE, UniProtKB/TrEMBL
  CC14A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BZ66 ENTREZGENE
UniProt Secondary Q8BZ66 UniProtKB/Swiss-Prot
1 to 33 of 33 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-07-10 Cdc14a  CDC14 cell division cycle 14A  Cdc14a  CDC14 cell division cycle 14 homolog A (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED