Cfap61 (cilia and flagella associated protein 61) - Rat Genome Database

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Gene: Cfap61 (cilia and flagella associated protein 61) Rattus norvegicus
Analyze
Symbol: Cfap61 (Ensembl: AABR07054096.1)
Name: cilia and flagella associated protein 61
RGD ID: 1311519
Description: Predicted to act upstream of or within flagellated sperm motility and spermatid nucleus elongation. Predicted to be located in axoneme and sperm flagellum. Predicted to be part of radial spoke stalk. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CFAP61 (cilia and flagella associated protein 61); INTERACTS WITH atrazine; Cuprizon; 2,3',4,4',5-Pentachlorobiphenyl (ortholog).
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cilia- and flagella-associated protein 61; hypothetical LOC311496; LOC311496; RGD1311519
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83153,807,672 - 154,086,591 (+)NCBIGRCr8
mRatBN7.23133,354,400 - 133,633,310 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3133,354,197 - 133,633,320 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03140,141,768 - 140,421,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03146,561,958 - 146,840,545 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43134,559,161 - 134,838,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13134,463,845 - 134,744,536 (+)NCBI
Celera3132,219,392 - 132,497,742 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cfap61
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83153,807,672 - 154,086,591 (+)NCBIGRCr8
mRatBN7.23133,354,400 - 133,633,310 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3133,354,197 - 133,633,320 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03140,141,768 - 140,421,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03146,561,958 - 146,840,545 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43134,559,161 - 134,838,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13134,463,845 - 134,744,536 (+)NCBI
Celera3132,219,392 - 132,497,742 (+)NCBICelera
Cytogenetic Map3q41NCBI
CFAP61
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382020,052,532 - 20,360,698 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2020,052,514 - 20,360,703 (+)EnsemblGRCh38hg38GRCh38
GRCh372020,033,176 - 20,341,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362019,981,196 - 20,289,346 (+)NCBINCBI36Build 36hg18NCBI36
Build 342019,981,195 - 20,289,349NCBI
Celera2020,107,179 - 20,415,417 (+)NCBICelera
Cytogenetic Map20p11.23NCBI
HuRef2019,994,826 - 20,304,773 (+)NCBIHuRef
CHM1_12020,033,540 - 20,341,815 (+)NCBICHM1_1
T2T-CHM13v2.02020,106,812 - 20,419,226 (+)NCBIT2T-CHM13v2.0
Cfap61
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392145,776,677 - 146,056,955 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2145,776,704 - 146,056,959 (+)EnsemblGRCm39 Ensembl
GRCm382145,934,757 - 146,215,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2145,934,784 - 146,215,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv372145,760,520 - 145,789,962 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362145,626,246 - 145,657,662 (+)NCBIMGSCv36mm8
Celera2147,170,619 - 147,200,795 (+)NCBICelera
Cytogenetic Map2G1NCBI
cM Map271.28NCBI
Cfap61
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541528,170,751 - 28,389,427 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541528,171,364 - 28,389,356 (+)NCBIChiLan1.0ChiLan1.0
CFAP61
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,940,513 - 21,246,208 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12020,937,349 - 21,236,288 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02020,010,524 - 20,309,835 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12019,975,610 - 20,271,590 (+)NCBIpanpan1.1PanPan1.1panPan2
CFAP61
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1243,018,791 - 3,294,646 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl243,018,781 - 3,287,597 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha243,046,784 - 3,322,873 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,426,380 - 3,703,082 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,426,370 - 3,696,012 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1243,022,757 - 3,298,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0243,125,820 - 3,401,868 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0243,403,868 - 3,679,847 (-)NCBIUU_Cfam_GSD_1.0
Cfap61
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640151,645,587 - 151,896,736 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648576,883 - 328,319 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648576,615 - 328,054 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP61
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1728,116,473 - 28,372,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11728,111,618 - 28,373,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21732,170,831 - 32,310,795 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP61
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1249,070,744 - 49,352,904 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl249,074,731 - 49,352,616 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660783,857,114 - 4,140,107 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap61
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474120,581,691 - 20,856,165 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap61
1160 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
D3Rat13  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23133,466,517 - 133,466,663 (+)MAPPERmRatBN7.2
Rnor_6.03140,254,384 - 140,254,529NCBIRnor6.0
Rnor_5.03146,674,768 - 146,674,913UniSTSRnor5.0
RGSC_v3.43134,669,295 - 134,669,441RGDRGSC3.4
RGSC_v3.43134,669,296 - 134,669,441UniSTSRGSC3.4
RGSC_v3.13134,574,869 - 134,575,014RGD
Celera3132,330,956 - 132,331,101UniSTS
RH 3.4 Map31169.4RGD
RH 3.4 Map31169.4UniSTS
RH 2.0 Map3796.6RGD
SHRSP x BN Map364.1499RGD
Cytogenetic Map3q41UniSTS
D3Rat152  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23133,483,147 - 133,483,320 (+)MAPPERmRatBN7.2
Rnor_6.03140,271,012 - 140,271,184NCBIRnor6.0
Rnor_5.03146,691,396 - 146,691,568UniSTSRnor5.0
RGSC_v3.43134,685,923 - 134,686,096RGDRGSC3.4
RGSC_v3.43134,685,924 - 134,686,096UniSTSRGSC3.4
RGSC_v3.13134,591,497 - 134,591,669RGD
Celera3132,347,578 - 132,347,752UniSTS
RH 3.4 Map31107.2RGD
RH 3.4 Map31107.2UniSTS
RH 2.0 Map3796.8RGD
SHRSP x BN Map364.1499RGD
Cytogenetic Map3q41UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000014713   ⟹   ENSRNOP00000097691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3133,354,197 - 133,633,320 (+)Ensembl
Rnor_6.0 Ensembl3140,146,170 - 140,421,389 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000034522   ⟹   ENSRNOP00000087555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3133,369,092 - 133,397,268 (+)Ensembl
Rnor_6.0 Ensembl3140,156,438 - 140,184,719 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3140,225,696 - 140,421,626 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000076332   ⟹   ENSRNOP00000095317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3133,354,197 - 133,397,038 (+)Ensembl
Rnor_6.0 Ensembl3140,141,779 - 140,194,815 (+)Ensembl
RefSeq Acc Id: XM_008762285   ⟹   XP_008760507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,807,672 - 154,086,591 (+)NCBI
mRatBN7.23133,354,400 - 133,633,310 (+)NCBI
Rnor_6.03140,141,768 - 140,421,839 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762286   ⟹   XP_008760508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,807,687 - 154,086,591 (+)NCBI
mRatBN7.23133,354,402 - 133,633,310 (+)NCBI
Rnor_6.03140,141,772 - 140,421,839 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039106616   ⟹   XP_038962544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,812,113 - 154,086,591 (+)NCBI
mRatBN7.23133,358,828 - 133,633,310 (+)NCBI
RefSeq Acc Id: XM_039106619   ⟹   XP_038962547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,807,687 - 153,925,852 (+)NCBI
mRatBN7.23133,354,402 - 133,476,759 (+)NCBI
RefSeq Acc Id: XM_063285000   ⟹   XP_063141070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,809,567 - 154,086,591 (+)NCBI
RefSeq Acc Id: XM_063285001   ⟹   XP_063141071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,822,357 - 154,086,591 (+)NCBI
RefSeq Acc Id: XM_063285002   ⟹   XP_063141072
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,812,113 - 154,086,591 (+)NCBI
RefSeq Acc Id: XM_063285003   ⟹   XP_063141073
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,809,564 - 154,006,597 (+)NCBI
RefSeq Acc Id: XM_063285004   ⟹   XP_063141074
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,809,564 - 153,988,636 (+)NCBI
RefSeq Acc Id: XM_063285005   ⟹   XP_063141075
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,809,565 - 153,925,852 (+)NCBI
RefSeq Acc Id: XM_063285006   ⟹   XP_063141076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83153,807,685 - 153,925,852 (+)NCBI
RefSeq Acc Id: XP_008760507   ⟸   XM_008762285
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AWP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760508   ⟸   XM_008762286
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038962547   ⟸   XM_039106619
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038962544   ⟸   XM_039106616
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000087555   ⟸   ENSRNOT00000034522
Ensembl Acc Id: ENSRNOP00000095317   ⟸   ENSRNOT00000076332
Ensembl Acc Id: ENSRNOP00000097691   ⟸   ENSRNOT00000014713
RefSeq Acc Id: XP_063141076   ⟸   XM_063285006
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063141073   ⟸   XM_063285003
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063141074   ⟸   XM_063285004
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063141075   ⟸   XM_063285005
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063141070   ⟸   XM_063285000
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AWP1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141072   ⟸   XM_063285002
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063141071   ⟸   XM_063285001
- Peptide Label: isoform X3
Protein Domains
Cilia- and flagella-associated protein 61 N-

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311519 AgrOrtholog
BioCyc Gene G2FUF-47574 BioCyc
Ensembl Genes ENSRNOG00000011028 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014713.9 UniProtKB/TrEMBL
  ENSRNOT00000034522.6 UniProtKB/TrEMBL
  ENSRNOT00000076332.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.630.30 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
InterPro Acyl_CoA_acyltransferase UniProtKB/TrEMBL
  CFAP61 UniProtKB/TrEMBL
  CFAP61_N UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
KEGG Report rno:311496 UniProtKB/TrEMBL
NCBI Gene 311496 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 61 UniProtKB/TrEMBL
  PTHR21178 UniProtKB/TrEMBL
Pfam DUF4821 UniProtKB/TrEMBL
PhenoGen Cfap61 PhenoGen
RatGTEx ENSRNOG00000011028 RatGTEx
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
  SSF55729 UniProtKB/TrEMBL
UniProt A0A8I6A808_RAT UniProtKB/TrEMBL
  A0A8I6AWP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B2E6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-06 Cfap61  cilia and flagella associated protein 61  RGD1311519  hypothetical LOC311496  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1311519  hypothetical LOC311496   RGD1311519_predicted  hypothetical LOC311496 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1311519_predicted  hypothetical LOC311496 (predicted)  LOC311496_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC311496_predicted  hypothetical LOC311496 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL