Cfap61 (cilia and flagella associated protein 61) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cfap61 (cilia and flagella associated protein 61) Mus musculus
Analyze
Symbol: Cfap61
Name: cilia and flagella associated protein 61
RGD ID: 1618265
MGI Page MGI
Description: Acts upstream of or within flagellated sperm motility and spermatid nucleus elongation. Located in axoneme and sperm flagellum. Part of radial spoke stalk. Used to study oligoasthenoteratozoospermia. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CFAP61 (cilia and flagella associated protein 61).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930529M08Rik; BB178539; BC024760; cilia- and flagella-associated protein 61; hypothetical protein LOC78774; MGC129508; MGC129509; MGC58680; RP23-125A1.2; uncharacterized protein C20orf26 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392145,776,677 - 146,056,955 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2145,776,704 - 146,056,959 (+)EnsemblGRCm39 Ensembl
GRCm382145,934,757 - 146,215,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2145,934,784 - 146,215,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv372145,760,520 - 145,789,962 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362145,626,246 - 145,657,662 (+)NCBIMGSCv36mm8
Celera2147,170,619 - 147,200,795 (+)NCBICelera
Cytogenetic Map2G1NCBI
cM Map271.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:17536020   PMID:21267068   PMID:21677750   PMID:30973865  
PMID:34792097   PMID:35387802   PMID:36659204  


Genomics

Comparative Map Data
Cfap61
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392145,776,677 - 146,056,955 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2145,776,704 - 146,056,959 (+)EnsemblGRCm39 Ensembl
GRCm382145,934,757 - 146,215,035 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2145,934,784 - 146,215,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv372145,760,520 - 145,789,962 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362145,626,246 - 145,657,662 (+)NCBIMGSCv36mm8
Celera2147,170,619 - 147,200,795 (+)NCBICelera
Cytogenetic Map2G1NCBI
cM Map271.28NCBI
CFAP61
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382020,052,532 - 20,360,698 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2020,052,514 - 20,360,703 (+)EnsemblGRCh38hg38GRCh38
GRCh372020,033,176 - 20,341,342 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362019,981,196 - 20,289,346 (+)NCBINCBI36Build 36hg18NCBI36
Build 342019,981,195 - 20,289,349NCBI
Celera2020,107,179 - 20,415,417 (+)NCBICelera
Cytogenetic Map20p11.23NCBI
HuRef2019,994,826 - 20,304,773 (+)NCBIHuRef
CHM1_12020,033,540 - 20,341,815 (+)NCBICHM1_1
T2T-CHM13v2.02020,106,812 - 20,419,226 (+)NCBIT2T-CHM13v2.0
Cfap61
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83153,807,672 - 154,086,591 (+)NCBIGRCr8
mRatBN7.23133,354,400 - 133,633,310 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3133,354,197 - 133,633,320 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.03140,141,768 - 140,421,840 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03146,561,958 - 146,840,545 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43134,559,161 - 134,838,963 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13134,463,845 - 134,744,536 (+)NCBI
Celera3132,219,392 - 132,497,742 (+)NCBICelera
Cytogenetic Map3q41NCBI
Cfap61
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541528,170,751 - 28,389,427 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541528,171,364 - 28,389,356 (+)NCBIChiLan1.0ChiLan1.0
CFAP61
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22120,940,513 - 21,246,208 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12020,937,349 - 21,236,288 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02020,010,524 - 20,309,835 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12019,975,610 - 20,271,590 (+)NCBIpanpan1.1PanPan1.1panPan2
CFAP61
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1243,018,791 - 3,294,646 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl243,018,781 - 3,287,597 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha243,046,784 - 3,322,873 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,426,380 - 3,703,082 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,426,370 - 3,696,012 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1243,022,757 - 3,298,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0243,125,820 - 3,401,868 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0243,403,868 - 3,679,847 (-)NCBIUU_Cfam_GSD_1.0
Cfap61
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640151,645,587 - 151,896,736 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648576,883 - 328,319 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648576,615 - 328,054 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP61
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1728,116,473 - 28,372,543 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11728,111,618 - 28,373,334 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21732,170,831 - 32,310,795 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP61
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1249,070,744 - 49,352,904 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl249,074,731 - 49,352,616 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660783,857,114 - 4,140,107 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap61
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474120,581,691 - 20,856,165 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap61
8726 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3031
Count of miRNA genes:896
Interacting mature miRNAs:1273
Transcripts:ENSMUST00000116398, ENSMUST00000118002, ENSMUST00000125223, ENSMUST00000126415, ENSMUST00000130168, ENSMUST00000133433, ENSMUST00000138774, ENSMUST00000143896, ENSMUST00000144066, ENSMUST00000146891, ENSMUST00000150771, ENSMUST00000152515, ENSMUST00000155214, ENSMUST00000167179
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1300647Nktcn2_mnatural killer T cell numbers 2 (mouse)Not determined2138737416145893953Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
4141281Ssrq1_mstress response QTL 1 (mouse)Not determined142059301145893953Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
13504830Bacsq1_mbaculum shape QTL 1 (mouse)2145716184161016184Mouse

Markers in Region
BB178539  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382145,964,604 - 145,964,719UniSTSGRCm38
MGSCv372145,790,340 - 145,790,455UniSTSGRCm37
Celera2147,201,173 - 147,201,288UniSTS
Cytogenetic Map2G1UniSTS
Whitehead/MRC_RH21735.69UniSTS
31.MMHAP22FRC10.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382145,942,499 - 145,942,674UniSTSGRCm38
MGSCv372145,768,235 - 145,768,410UniSTSGRCm37
Celera2147,179,078 - 147,179,253UniSTS
Cytogenetic Map2G1UniSTS
Whitehead_YAC2 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001369121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162725 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC073437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK086391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC107031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000116398   ⟹   ENSMUSP00000112099
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,776,704 - 145,806,146 (+)Ensembl
GRCm38.p6 Ensembl2145,934,784 - 145,964,226 (+)Ensembl
RefSeq Acc Id: ENSMUST00000118002   ⟹   ENSMUSP00000113529
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,776,736 - 145,795,734 (+)Ensembl
GRCm38.p6 Ensembl2145,934,816 - 145,953,814 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125223   ⟹   ENSMUSP00000121560
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,887,378 - 145,971,016 (+)Ensembl
GRCm38.p6 Ensembl2146,045,458 - 146,129,096 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126415   ⟹   ENSMUSP00000118626
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,776,704 - 145,884,993 (+)Ensembl
GRCm38.p6 Ensembl2145,934,784 - 146,043,073 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130168   ⟹   ENSMUSP00000121294
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,776,728 - 145,805,228 (+)Ensembl
GRCm38.p6 Ensembl2145,934,808 - 145,963,308 (+)Ensembl
RefSeq Acc Id: ENSMUST00000133433   ⟹   ENSMUSP00000118411
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,776,734 - 146,056,959 (+)Ensembl
GRCm38.p6 Ensembl2145,934,814 - 146,215,039 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138774   ⟹   ENSMUSP00000120838
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,776,725 - 145,808,143 (+)Ensembl
GRCm38.p6 Ensembl2145,934,805 - 145,966,223 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143896
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,994,264 - 146,056,880 (+)Ensembl
GRCm38.p6 Ensembl2146,152,344 - 146,214,960 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144066
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,889,171 - 146,056,955 (+)Ensembl
GRCm38.p6 Ensembl2146,047,251 - 146,215,035 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146891
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2146,056,185 - 146,056,955 (+)Ensembl
GRCm38.p6 Ensembl2146,214,265 - 146,215,035 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150771
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,887,246 - 145,970,885 (+)Ensembl
GRCm38.p6 Ensembl2146,045,326 - 146,128,965 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152515   ⟹   ENSMUSP00000116283
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,776,725 - 145,805,373 (+)Ensembl
GRCm38.p6 Ensembl2145,934,805 - 145,963,453 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2145,883,414 - 145,937,608 (+)Ensembl
GRCm38.p6 Ensembl2146,041,494 - 146,095,688 (+)Ensembl
RefSeq Acc Id: ENSMUST00000167179   ⟹   ENSMUSP00000129303
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2146,056,533 - 146,056,715 (+)Ensembl
GRCm38.p6 Ensembl2146,214,613 - 146,214,795 (+)Ensembl
RefSeq Acc Id: NM_001369121   ⟹   NP_001356050
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,704 - 146,056,952 (+)NCBI
GRCm382145,934,784 - 146,215,032 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175280   ⟹   NP_780489
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,704 - 145,806,146 (+)NCBI
GRCm382145,934,784 - 145,964,226 (+)ENTREZGENE
MGSCv372145,760,520 - 145,789,962 (+)RGD
Celera2147,170,619 - 147,200,795 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030252245   ⟹   XP_030108105
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,691 - 146,056,955 (+)NCBI
GRCm382145,934,771 - 146,215,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252246   ⟹   XP_030108106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,687 - 146,056,955 (+)NCBI
GRCm382145,934,769 - 146,215,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252247   ⟹   XP_030108107
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,710 - 146,056,955 (+)NCBI
GRCm382145,934,790 - 146,215,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252248   ⟹   XP_030108108
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,789,849 - 146,056,955 (+)NCBI
GRCm382145,947,930 - 146,215,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252249   ⟹   XP_030108109
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,677 - 146,056,955 (+)NCBI
GRCm382145,934,757 - 146,215,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252250   ⟹   XP_030108110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,725 - 146,056,955 (+)NCBI
GRCm382145,934,805 - 146,215,035 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162724   ⟹   XP_036018617
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,691 - 146,056,955 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162725   ⟹   XP_036018618
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392145,776,687 - 145,860,199 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_780489   ⟸   NM_175280
- Peptide Label: isoform 2
- UniProtKB: B7ZCD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030108109   ⟸   XM_030252249
- Peptide Label: isoform X1
- UniProtKB: Q8R1E0 (UniProtKB/Swiss-Prot),   Q8CEL2 (UniProtKB/Swiss-Prot),   Q3KNX7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108106   ⟸   XM_030252246
- Peptide Label: isoform X2
- UniProtKB: Q8R1E0 (UniProtKB/Swiss-Prot),   Q8CEL2 (UniProtKB/Swiss-Prot),   Q3KNX7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108105   ⟸   XM_030252245
- Peptide Label: isoform X1
- UniProtKB: Q8R1E0 (UniProtKB/Swiss-Prot),   Q8CEL2 (UniProtKB/Swiss-Prot),   Q3KNX7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001356050   ⟸   NM_001369121
- Peptide Label: isoform 1
- UniProtKB: Q8R1E0 (UniProtKB/Swiss-Prot),   Q8CEL2 (UniProtKB/Swiss-Prot),   Q3KNX7 (UniProtKB/Swiss-Prot),   B2FDI8 (UniProtKB/TrEMBL),   A8Y5L4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030108107   ⟸   XM_030252247
- Peptide Label: isoform X3
- UniProtKB: Q8R1E0 (UniProtKB/Swiss-Prot),   Q8CEL2 (UniProtKB/Swiss-Prot),   Q3KNX7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108110   ⟸   XM_030252250
- Peptide Label: isoform X5
- UniProtKB: Q8R1E0 (UniProtKB/Swiss-Prot),   Q8CEL2 (UniProtKB/Swiss-Prot),   Q3KNX7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030108108   ⟸   XM_030252248
- Peptide Label: isoform X4
- UniProtKB: Q8R1E0 (UniProtKB/Swiss-Prot),   Q8CEL2 (UniProtKB/Swiss-Prot),   Q3KNX7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000121560   ⟸   ENSMUST00000125223
RefSeq Acc Id: ENSMUSP00000121294   ⟸   ENSMUST00000130168
RefSeq Acc Id: ENSMUSP00000120838   ⟸   ENSMUST00000138774
RefSeq Acc Id: ENSMUSP00000113529   ⟸   ENSMUST00000118002
RefSeq Acc Id: ENSMUSP00000118411   ⟸   ENSMUST00000133433
RefSeq Acc Id: ENSMUSP00000116283   ⟸   ENSMUST00000152515
RefSeq Acc Id: ENSMUSP00000118626   ⟸   ENSMUST00000126415
RefSeq Acc Id: ENSMUSP00000129303   ⟸   ENSMUST00000167179
RefSeq Acc Id: ENSMUSP00000112099   ⟸   ENSMUST00000116398
RefSeq Acc Id: XP_036018618   ⟸   XM_036162725
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036018617   ⟸   XM_036162724
- Peptide Label: isoform X6
Protein Domains
Cilia- and flagella-associated protein 61 N-

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CEL2-F1-model_v2 AlphaFold Q8CEL2 1-1252 view protein structure

Promoters
RGD ID:6830613
Promoter ID:MM_KWN:32082
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:ENSMUST00000061736,   NM_175280,   OTTMUST00000009312,   OTTMUST00000009315,   OTTMUST00000083462,   OTTMUST00000083463,   UC008MSC.1,   UC008MSE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362145,760,281 - 145,760,781 (+)MPROMDB
RGD ID:6879016
Promoter ID:EPDNEW_M2959
Type:multiple initiation site
Name:Cfap61_1
Description:Mus musculus cilia and flagella associated protein 61 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382145,934,784 - 145,934,844EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1926024 AgrOrtholog
Ensembl Genes ENSMUSG00000037143 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000116398 ENTREZGENE
  ENSMUST00000116398.8 UniProtKB/TrEMBL
  ENSMUST00000118002.2 UniProtKB/TrEMBL
  ENSMUST00000125223.2 UniProtKB/TrEMBL
  ENSMUST00000126415.8 UniProtKB/TrEMBL
  ENSMUST00000130168.8 UniProtKB/TrEMBL
  ENSMUST00000133433 ENTREZGENE
  ENSMUST00000133433.8 UniProtKB/TrEMBL
  ENSMUST00000138774.8 UniProtKB/TrEMBL
  ENSMUST00000152515.8 UniProtKB/TrEMBL
  ENSMUST00000167179.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.630.30 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Acyl_CoA_acyltransferase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CFAP61 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CFAP61_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1926024 ENTREZGENE
NCBI Gene 78774 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 61 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21178 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4821 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cfap61 PhenoGen
Superfamily-SCOP SSF51905 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55729 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8Y5L4 ENTREZGENE, UniProtKB/TrEMBL
  B2FDE9_MOUSE UniProtKB/TrEMBL
  B2FDI8 ENTREZGENE
  B7ZCD4_MOUSE UniProtKB/TrEMBL
  B7ZCD5_MOUSE UniProtKB/TrEMBL
  B7ZCD6 ENTREZGENE, UniProtKB/TrEMBL
  B7ZCD7_MOUSE UniProtKB/TrEMBL
  B7ZCG4_MOUSE UniProtKB/TrEMBL
  CFA61_MOUSE UniProtKB/Swiss-Prot
  Q3KNX7 ENTREZGENE
  Q6PDF8_MOUSE UniProtKB/TrEMBL
  Q6ZWM9_MOUSE UniProtKB/TrEMBL
  Q80ZP9_MOUSE UniProtKB/TrEMBL
  Q8CEL2 ENTREZGENE
  Q8R1E0 ENTREZGENE
UniProt Secondary B2FDI8 UniProtKB/TrEMBL
  Q3KNX7 UniProtKB/Swiss-Prot
  Q8R1E0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-08-20 Cfap61  cilia and flagella associated protein 61  4930529M08Rik  RIKEN cDNA 4930529M08 gene  Symbol and/or name change 5135510 APPROVED