Slc26a6 (solute carrier family 26 member 6)

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Gene: Slc26a6 (solute carrier family 26 member 6) Rattus norvegicus

Analyze

Symbol:

Slc26a6

Name:

solute carrier family 26 member 6

RGD ID:

1310197

Description:

Predicted to enable several functions, including PDZ domain binding activity; identical protein binding activity; and salt transmembrane transporter activity. Involved in estrous cycle. Located in apical plasma membrane. Orthologous to human SLC26A6 (solute carrier family 26 member 6); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; amphetamine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC301010; solute carrier family 26 (anion exchanger), member 6; solute carrier family 26, member 6

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC26A6 (solute carrier family 26 member 6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Slc26a6 (solute carrier family 26, member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc26a6 (solute carrier family 26 member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC26A6 (solute carrier family 26 member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc26a6 (solute carrier family 26 member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC26A6 (solute carrier family 26 member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC26A6 (solute carrier family 26 member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc26a6 (solute carrier family 26 member 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SLC26A6 (solute carrier family 26 member 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc26a6 (solute carrier family 26, member 6)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-117c9.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	slc26a6 (solute carrier family 26 member 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc26a6l (solute carrier family 26 member 6, like)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Prestin	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	YPR003C	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	sulp-1	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	sulp-4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sulp-5	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	sulp-8	Alliance	DIOPT (Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	109,558,968 - 109,569,778 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,559,642 - 109,569,778 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	115,177,125 - 115,187,296 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	113,376,304 - 113,386,477 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	111,219,103 - 111,229,275 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	117,648,792 - 117,659,376 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,648,745 - 117,659,804 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	116,992,424 - 117,003,189 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	113,925,291 - 113,935,357 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	113,944,745 - 113,954,812 (+)	NCBI
Celera	8	108,853,440 - 108,863,509 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 1 (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butan-1-ol (ISO)

carbon nanotube (ISO)

chlorothalonil (ISO)

chlorpyrifos (EXP)

chromium(6+) (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

doxorubicin (ISO)

enilconazole (ISO)

epoxiconazole (ISO)

genistein (ISO)

gentamycin (EXP)

glyphosate (EXP)

GW 4064 (ISO)

hydrogencarbonate (ISO)

imidacloprid (EXP)

indometacin (ISO)

isobutanol (ISO)

ketamine (EXP)

lead(0) (ISO)

lead(2+) (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

phenylephrine (EXP)

pirinixic acid (ISO)

sevoflurane (ISO)

temozolomide (ISO)

thiabendazole (EXP)

thioacetamide (EXP)

tributylstannane (ISO)

triptonide (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiotensin-activated signaling pathway (ISO)

bicarbonate transport (ISO)

cellular response to cAMP (ISO)

cellular response to fructose stimulus (ISO)

cellular response to type II interferon (ISO)

chloride transport (ISO)

epithelial fluid transport (ISO)

establishment of localization in cell (ISO)

estrous cycle (IEP)

formate transport (ISO)

intestinal absorption (ISO)

intracellular pH elevation (ISO)

mannitol transmembrane transport (ISO)

oxalate transport (ISO)

oxalic acid secretion (ISO)

positive regulation of dipeptide transmembrane transport (ISO)

protein kinase C signaling (ISO)

regulation of intracellular pH (ISO)

sperm capacitation (ISO)

sulfate transmembrane transport (IEA)

sulfate transport (ISO)

transepithelial chloride transport (ISO)

transepithelial transport (ISO)

Cellular Component

apical plasma membrane (IDA,ISO)

basolateral plasma membrane (ISO)

brush border membrane (ISO)

cytosol (IEA,ISO)

membrane (ISO)

plasma membrane (ISO)

sperm midpiece (ISO)

vesicle (ISO)

vesicle membrane (ISO)

Molecular Function

bicarbonate transmembrane transporter activity (IBA,ISO)

chloride transmembrane transporter activity (IBA,ISO)

chloride:bicarbonate antiporter activity (ISO)

efflux transmembrane transporter activity (ISO)

formate transmembrane transporter activity (ISO)

identical protein binding (ISO)

obsolete anion:anion antiporter activity (ISO)

oxalate transmembrane transporter activity (IBA,ISO)

PDZ domain binding (ISO)

protein binding (ISO)

solute:inorganic anion antiporter activity (ISO)

sulfate transmembrane transporter activity (IBA,ISO)

sulfate:bicarbonate antiporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	In-vivo functional study on the involvement of CFTR, SLC26A6, NHE-1 and CA isoenzymes II and XII in uterine fluid pH, volume and electrolyte regulation in rats under different sex-steroid influence.	Gholami K, etal., Int J Med Sci. 2013 Jul 5;10(9):1121-34. doi: 10.7150/ijms.5918. Print 2013.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11087667	PMID:11459928	PMID:11842009	PMID:12119287	PMID:12217875	PMID:12444019	PMID:12477932	PMID:15990874	PMID:16141316	PMID:16532010	PMID:17151144	PMID:17170521
PMID:18496516	PMID:18655181	PMID:19033647	PMID:20150244	PMID:20501439	PMID:21976599	PMID:22021714	PMID:22895259	PMID:23226939	PMID:23933130	PMID:26671068	PMID:30405874

Genomics

Comparative Map Data

Slc26a6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	109,558,968 - 109,569,778 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,559,642 - 109,569,778 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	115,177,125 - 115,187,296 (+)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	8	113,376,304 - 113,386,477 (+)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	8	111,219,103 - 111,229,275 (+)	NCBI	Rnor_WKY
Rnor_6.0	8	117,648,792 - 117,659,376 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,648,745 - 117,659,804 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	116,992,424 - 117,003,189 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	113,925,291 - 113,935,357 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	113,944,745 - 113,954,812 (+)	NCBI
Celera	8	108,853,440 - 108,863,509 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

SLC26A6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	48,625,723 - 48,635,461 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	3	48,625,723 - 48,635,493 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	48,663,156 - 48,672,894 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	48,638,160 - 48,647,930 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	48,638,159 - 48,647,930	NCBI
Celera	3	48,619,066 - 48,628,836 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	48,721,325 - 48,731,096 (-)	NCBI		HuRef
CHM1_1	3	48,615,450 - 48,625,220 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	48,654,683 - 48,664,421 (-)	NCBI		T2T-CHM13v2.0

Slc26a6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,731,239 - 108,742,117 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	108,730,482 - 108,742,117 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	108,854,043 - 108,913,049 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,853,283 - 108,913,049 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	108,814,741 - 108,815,380 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv37	9	108,756,374 - 108,764,474 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	108,711,942 - 108,719,366 (+)	NCBI		MGSCv36	mm8
Celera	9	108,461,213 - 108,471,055 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI

Slc26a6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	713,215 - 722,817 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955532	713,725 - 723,190 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC26A6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	3	49,629,237 - 49,639,033 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	49,629,237 - 49,639,039 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	3	48,547,277 - 48,557,099 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

Slc26a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	63,665,342 - 63,675,179 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	424,720 - 435,293 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936529	425,839 - 435,590 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC26A6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,317,877 - 31,330,580 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	31,319,287 - 31,330,649 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	34,582,925 - 34,594,273 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC26A6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,035,676 - 10,046,274 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	10,035,478 - 10,045,304 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	157,044,896 - 157,054,627 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc26a6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	2,640,208 - 2,649,203 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624730	2,639,940 - 2,649,358 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc26a6
25 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	56
Count of miRNA genes:	51
Interacting mature miRNAs:	52
Transcripts:	ENSRNOT00000027762
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088624	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	100149864	120994388	Rat

Markers in Region

RH131067

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	109,569,227 - 109,569,655 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	117,658,826 - 117,659,253	NCBI	Rnor6.0
Rnor_5.0	8	117,002,639 - 117,003,066	UniSTS	Rnor5.0
RGSC_v3.4	8	113,934,823 - 113,935,250	UniSTS	RGSC3.4
Celera	8	108,862,975 - 108,863,402	UniSTS
RH 3.4 Map	8	1115.19	UniSTS
Cytogenetic Map	8	q32	UniSTS

AI111610

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	109,559,078 - 109,559,875 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	117,648,753 - 117,649,549	NCBI	Rnor6.0
Rnor_5.0	8	116,992,490 - 116,993,286	UniSTS	Rnor5.0
RGSC_v3.4	8	113,924,675 - 113,925,471	UniSTS	RGSC3.4
Celera	8	108,852,824 - 108,853,620	UniSTS
RH 3.4 Map	8	1114.89	UniSTS
Cytogenetic Map	8	q32	UniSTS

ksks342

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	109,562,429 - 109,562,620 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	117,652,104 - 117,652,294	NCBI	Rnor6.0
Rnor_5.0	8	116,995,841 - 116,996,031	UniSTS	Rnor5.0
RGSC_v3.4	8	113,928,026 - 113,928,216	UniSTS	RGSC3.4
Celera	8	108,856,175 - 108,856,365	UniSTS
Cytogenetic Map	8	q32	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	1			4				14		10	1
Low	1	42	57	41	15	41	8	11	60	35	31	10	8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001143817	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243755	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243756	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243757	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC096455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC128769	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000027762 ⟹ ENSRNOP00000027762

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	109,559,642 - 109,569,778 (+)	Ensembl
Rnor_6.0 Ensembl	8	117,648,745 - 117,659,804 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114709 ⟹ ENSRNOP00000095796

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	109,559,642 - 109,569,778 (+)	Ensembl

RefSeq Acc Id:

NM_001143817 ⟹ NP_001137289

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	109,559,695 - 109,569,762 (+)	NCBI
Rnor_6.0	8	117,649,369 - 117,659,360 (+)	NCBI
Rnor_5.0	8	116,992,424 - 117,003,189 (+)	NCBI
RGSC_v3.4	8	113,925,291 - 113,935,357 (+)	RGD
Celera	8	108,853,440 - 108,863,509 (+)	RGD

Sequence:

show sequence

AAGCCGCACACGAGCTACCCTCTGAGGGTCATGGGACTGCCTGATGGGTCCGACCACGGGACAC
AGCAGACGCAGGCTCTCCTGTCTGCAACCCAAGAAATGGAGCTGGAAAGGAGAGACTACCATGT
GGAAAGGCCATTGCTGAACCAAGAGCAGCTAGAGGATCTGGGGCACTGGGGTCCAGTGTCGAAG
ACCCACCCGTGGCGAACTTGGTTTCGATGCTCCCGTGCTCGGGCCAAATCTCTTCTGATCCAGC
ATGTTCCGGTCTTGGGCTGGTTACCCCGATATCCTGTGCGTGAGTGGCTCTTGGGTGACCTGTT
ATCCGGCCTGAGTGTGGCCATCATGCAGCTTCCACAGGGCTTGGCCTATGCCCTCCTGGCGGGA
TTGCCTCCTATGTTTGGCCTGTACAGTTCTTTCTACCCTGTCTTCGTCTACTTCCTGTTTGGTA
CCTCTAGACACATCTCTGTGGGGACCTTTGCTGTCATGTCTGTGATGGTGGGCGGCGTGACAGA
ATCTCTGACAGCAGATGAGGCCTTCGTGCAAAGCTTGAACACCACAGTCGATGGTGCCCGTGTG
CAGGTGGCCTACACGCTCAGCTTCCTGGTTGGCCTTTTCCAGGTGGGGCTGGGCCTGGTACACT
TCGGTTTTGTGGTCACCTACCTGTCAGAGCCTTTGGTCCGCAGCTATACCACGGCTGCCTCTGT
GCAAGTCCTCGTCTCCCAGCTCAAGTATGTGTTTGGCATCAAACTCAACAGTCACTCTGGGCCA
CTGTCCGTTATCTATACAGTGCTGGAGGTCTGTGCCCAGCTGCCTAAGACTGTGCCTGGCACCG
TGGTCACAGCAATCGTGGCAGGAGTGGTGTTGGTGCTGGTTAAACTGCTGAATGAAAAACTGCG
CCGACGTCTGCCCTTGCCCATTCCTGGGGAACTACTCACGCTAATTGGGGCCACCGCTATTTCC
TACGGTGTGAAGCTGAATGACAGATTCAAGGTGGATGTGGTGGGCAACATCACCACAGGGCTGA
TACCCCCAGTGGCACCCAAGACGGAGCTGTTTGCAACGCTTGTGGGAAACGCCTTCGCCATTGC
CGTGGTGGGCTTCGCCATTGCCATCTCACTGGGGAAGATCTTTGCCCTGAGGCATGGCTACCGT
GTGGACAGCAACCAGGAGCTGGTAGCCCTTGGCCTCAGTAACCTCATCGGAGGCTTCTTCCAGT
GCTTTCCTGTGAGCTGCTCCATGTCTCGGAGCTTGGTACAGGAGAGCACGGGAGGCAACACGCA
GATTGCTGGAGCCGTATCTTCCCTCTTTATACTCCTAATTATTGTCAAACTTGGGGAACTCTTC
CGAGACCTGCCCAAGGCCGTCCTGGCAGCTGTTATCATTGTGAACCTCAAGGGTATGATGAAGC
AGTTCTCTGACATCTGCTCTCTCTGGAAGGCAAATCGAGTGGACCTGCTAATCTGGCTGGTGAC
CTTTGTGGCCACGATCCTGCTGAACCTGGACATCGGCCTGGCAGTCTCCATAGTCTTCTCCTTG
CTGCTCGTGGTGATCCGAATGCAGCTGCCCCATTACTCCGTCCTGGGGCAGGTGCCAGATACGG
ATATTTATAGAGACGTGGCAGAATACTCAGGGGCCAAGGAGGTCCCGGGTGTGAAAGTCTTCCG
TTCCTCAGCCACCATGTACTTCGCCAACGCTGAGCTCTACAGTGATTCGCTGAAAAAGAAGTGT
GGCGTGGACGTTGACCGCCTCATCACCCAGAAAAAGAAACGAATCAAGAAGCAGGAGATGAAGA
TAAAGCGAATGAACAAAGCCAAGAAGTCCCAGAAACAGGCTGCTTCTTCCAAGATCTCCTCAGT
TTCTGTCAACGTCAACACCAACTTTGAAGACATCAAAAGCAATGATGTTGAGGGCTCTGAGGCC
AAGGTGCACCAAGGGGAGGAGTTGGAGGATGTAGTCGCCAGCAATCAAGAAGATGCCAAGCCCC
CAATCATGACCTCACTGAAGGCCCTGGGCCTGCCTCAGCCAGACTTCCATAGCCTCATCCTAGA
CTTGAGCACTGTCTCCTTTGTGGACACTGTGTGCATCAAGAGCCTGAAAAACATTTTCCGTGAC
TTCCGGGAGATCGAAGTGGAAGTATATATCGCAGCCTGTTACAGTCCTGTGGTCACCCAGCTTG
AAGCTGGACACTTCTTTGATGAGTCTATCACTAAGCAGCACGTCTTTGCCTCTGTTCATGACGC
CGTGACCTTTGCCCTCCACCACCGGAAGTCTGGCCCTAAGAGCCCTGTTTTGGCCACCAAACTC
TGACTTTGCTGCAGGAGACTGCCTACCTCTGGAGGTTGTGACAGGTCACCCTCATGAACCCCCC
TGCCTCTGAGCCACCTCCAGGTGCCACCTGGGACTCCATTCCATGTACCTGCACATACAACTCA
TGGGTGGATGCCCTGGGACTCCAAGTTCAGTGCTATAGGCCTGGGGCAGGGTATTACAGTCAGG
CTGGCCTTGGCTGGAAAAAGCTGATGTGGGTTTACAGTTTTGGGAAT

hide sequence

RefSeq Acc Id:

XM_006243755 ⟹ XP_006243817

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	109,558,975 - 109,569,778 (+)	NCBI
Rnor_6.0	8	117,648,794 - 117,659,376 (+)	NCBI
Rnor_5.0	8	116,992,424 - 117,003,189 (+)	NCBI

Sequence:

show sequence

AAAACTTGTCTGGAAAAAAAAAAAAAATGGAGGTGGGGTGGGGTTGGCCTTGAGGACCGCTGTG
CCAGGGACTCAGATGGAAAATCTGACTGTGATACTCATAGCTTGGTGGTACAGACCCTACAGAC
CTAGATCTCCCACAGCTGAGGTTCGGGTCCCTGGTTACACACCTAGGCATCCAGATCATTCAAG
AATTTCTCCTTTACATAAAGTGGGGGAACTTCTACAAAGCAATTAGGTCCAGCCATTTAGGGGC
ACAGAGGCCAAGGGTAGCACTGGCCTTTCGCTCCAGTCCTCTAGGCCCGGCAGAACGCTCCCAG
CTCCAAGTAGAAGGTTAACAAGCTGCAACTAACTGGAATTGCCAGCAAGGACAGAAGCTAGGCC
GACGAGGAGGAAAGGGTTAAATTTTTATTCTCCCGGCTCGCCCCGCCCGAAGAGTGTGACTTAG
GTTCCACTCCCAGAATTCTGATTGGCCTGATCATGCACATCCTAGCGGTGGCGCTTGACGCCGG
CCTCCTCCTTGGCCTGGCGCCACCTCCTACCCGGTAGTGGCCTCCTGGGGGAGCTGTCTGAAAA
AGCCGCACACGAGCTACCCTCTGAGGGTCATGGGACTGCCTGATGGGTCCGGTGAGTTGCAGGG
CGCCGTCCGAATTCCTCGTGTCCGCGAAGCGCTGGTAGTTCTGTGACTCCCGGCCTGGGTCAAT
TCAGGAAGGGAACCGGAATTTCCCGGCTGCAGAGCCTTGGTTTAGCACCTTGCCGATTTTCCGC
AGGAGGTTATCCATCAATAACGAGGGATGGGGGCGGGATCCGGCGCGACCCCAGCTCTTGAGGG
TTGTACTGAACGTCCCTGGAGTGCTAATAAGGGTGCTGCGGGGAAGTTGCTGCCTGCCAAGGAG
CCCTGGCACGGGAGGTGTGCCAGCTGGGCGCGTTGGGACTGGGAGAGAAACCGCTGCAAGACGG
GCTCTAGCCGGGCTGTGGACCAACAGCGGCCTCAGTCGGCGGGGGTTATGTGCGCTCCTGTCGC
TGCCCGCCCTTGTGCCCTCCCAAAGGGAGGTGCCAAGCATCAAGGCTCCGCCTCCCCAGGCGCT
TGCTGCCTGGTAAGGGGAGGGAGCCCTTTAAGAAGACTTGACAGATCTTGAAGGAGGGGAGAGG
GGCCTCTGAGAGCTCCTGGAGTCGGCCAGTGCAGAGAATCACTGAAGATCTTCCTTGCGTCTGC
ATTGCTCCCTCCTCCAATTGGATACCCAGGTTAGAGGGTCTTCCAAGGTGAGTTCCTACCCCTC
TGGTGGGATTCTCTCCTCTGGTTATGTAGCCTCTCCTAGATCAGAACTCACAGGTGAAATCTTC
CCCAAAAGGCTATCCCTCTCCTTCAAACTTGCGCCCCCCCCCAAGTATATCCATAGAGGAGAGC
TACACTCCATATGGAGTCTCCCCCAGATCAGAGGTTTTCCTGAGAGAACGCTCCAAATCCTGTC
CTCTGGTAAATAAAGTCTTTCTCCCACTTCTGAGAGAAGTGCCTCCCGCCCAGGTCAGAACTTG
CCTGCCCAGCCAAGGCTTTCAAGGCAGAGTTCCCTCTAGGTTGGATGTTCCCAGGTGAAGTTTC
CCTACTTCAAGTGGGAGCCTGTCTCTGGAGGTGAGAGCTTGGACCCTAGAGTCTTGGTGGGTCC
TGAAGCTGGAGGGCAGTATTGCTTACAGACCTCAGGTTTGCTAGGTCTTATCTCTCAGCCAGCA
AGGTTGGGCTCCTGGTAGAAAAGCTGGAAACAGGACTGGACGGCTCAGGGAAGGAAGGAATTGG
CTCAAGGAAGGAAGCCAAGGGGCTGAGAGGTAGGGGCTAGGAGTCACAGTCAGTCCGGACCTGG
ACCCAGACCTAGACTTGGACTTGAAGTGGTACTCAGGGTTGGGCAGCCACACCTGAGCTGGATG
AGTAGGTCAAGCTCATCCCTCTTTCCCTTCCGGAGAGACTTTGGCCCAGAAAGAGTCTTCCAGC
AGCCAAGGTTCAGATACTGCCTTTGTCTGGGTGTGAGCACGGGGCCCTCAGAAACCAGCAGGGT
TGGATCTACCCTTGATCTTTGAGCCCAGAAAACTCAGACCACGGGACACAGCAGACGCAGGCTC
TCCTGTCTGCAACCCAAGAAATGGAGCTGGAAAGGAGAGACTACCATGTGGAAAGGCCATTGCT
GAACCAAGAGCAGCTAGAGGATCTGGGGCACTGGGGTCCAGTGTCGAAGACCCACCCGTGGCGA
ACTTGGTTTCGATGCTCCCGTGCTCGGGCCAAATCTCTTCTGATCCAGCATGTTCCGGTCTTGG
GCTGGTTACCCCGATATCCTGTGCGTGAGTGGCTCTTGGGTGACCTGTTATCCGGCCTGAGTGT
GGCCATCATGCAGCTTCCACAGGGCTTGGCCTATGCCCTCCTGGCGGGATTGCCTCCTATGTTT
GGCCTGTACAGTTCTTTCTACCCTGTCTTCGTCTACTTCCTGTTTGGTACCTCTAGACACATCT
CTGTGGGGACCTTTGCTGTCATGTCTGTGATGGTGGGCGGCGTGACAGAATCTCTGACAGCAGA
TGAGGCCTTCGTGCAAAGCTTGAACACCACAGTCGATGGTGCCCGTGTGCAGGTGGCCTACACG
CTCAGCTTCCTGGTTGGCCTTTTCCAGGTGGGGCTGGGCCTGGTACACTTCGGTTTTGTGGTCA
CCTACCTGTCAGAGCCTTTGGTCCGCAGCTATACCACGGCTGCCTCTGTGCAAGTCCTCGTCTC
CCAGCTCAAGTATGTGTTTGGCATCAAACTCAACAGTCACTCTGGGCCACTGTCCGTTATCTAT
ACAGTGCTGGAGGTCTGTGCCCAGCTGCCTAAGACTGTGCCTGGCACCGTGGTCACAGCAATCG
TGGCAGGAGTGGTGTTGGTGCTGGTTAAACTGCTGAATGAAAAACTGCGCCGACGTCTGCCCTT
GCCCATTCCTGGGGAACTACTCACGCTAATTGGGGCCACCGCTATTTCCTACGGTGTGAAGCTG
AATGACAGATTCAAGGTGGATGTGGTGGGCAACATCACCACAGGGCTGATACCCCCAGTGGCAC
CCAAGACGGAGCTGTTTGCAACGCTTGTGGGAAACGCCTTCGCCATTGCCGTGGTGGGCTTCGC
CATTGCCATCTCACTGGGGAAGATCTTTGCCCTGAGGCATGGCTACCGTGTGGACAGCAACCAG
GAGCTGGTAGCCCTTGGCCTCAGTAACCTCATCGGAGGCTTCTTCCAGTGCTTTCCTGTGAGCT
GCTCCATGTCTCGGAGCTTGGTACAGGAGAGCACGGGAGGCAACACGCAGATTGCTGGAGCCGT
ATCTTCCCTCTTTATACTCCTAATTATTGTCAAACTTGGGGAACTCTTCCGAGACCTGCCCAAG
GCCGTCCTGGCAGCTGTTATCATTGTGAACCTCAAGGGTATGATGAAGCAGTTCTCTGACATCT
GCTCTCTCTGGAAGGCAAATCGAGTGGACCTGCTAATCTGGCTGGTGACCTTTGTGGCCACGAT
CCTGCTGAACCTGGACATCGGCCTGGCAGTCTCCATAGTCTTCTCCTTGCTGCTCGTGGTGATC
CGAATGCAGCTGCCCCATTACTCCGTCCTGGGGCAGGTGCCAGATACGGATATTTATAGAGACG
TGGCAGAATACTCAGGGGCCAAGGAGGTCCCGGGTGTGAAAGTCTTCCGTTCCTCAGCCACCAT
GTACTTCGCCAACGCTGAGCTCTACAGTGATTCGCTGAAAAAGAAGTGTGGCGTGGACGTTGAC
CGCCTCATCACCCAGAAAAAGAAACGAATCAAGAAGCAGGAGATGAAGATAAAGCGAATGAACA
AAGCCAAGAAGTCCCAGAAACAGGCTGCTTCTTCCAAGATCTCCTCAGTTTCTGTCAACGTCAA
CACCAACTTTGAAGACATCAAAAGCAATGATGTTGAGGGCTCTGAGGCCAAGGTGCACCAAGGG
GAGGAGTTGGAGGATGTAGTCGCCAGCAATCAAGAAGATGCCAAGCCCCCAATCATGACCTCAC
TGAAGGCCCTGGGCCTGCCTCAGCCAGACTTCCATAGCCTCATCCTAGACTTGAGCACTGTCTC
CTTTGTGGACACTGTGTGCATCAAGAGCCTGAAAAACATTTTCCGTGACTTCCGGGAGATCGAA
GTGGAAGTATATATCGCAGCCTGTTACAGTCCTGTGGTCACCCAGCTTGAAGCTGGACACTTCT
TTGATGAGTCTATCACTAAGCAGCACGTCTTTGCCTCTGTTCATGACGCCGTGACCTTTGCCCT
CCACCACCGGAAGTCTGGCCCTAAGAGCCCTGTTTTGGCCACCAAACTCTGACTTTGCTGCAGG
AGACTGCCTACCTCTGGAGGTTGTGACAGGTCACCCTCATGAACCCCCCTGCCTCTGAGCCACC
TCCAGGTGCCACCTGGGACTCCATTCCATGTACCTGCACATACAACTCATGGGTGGATGCCCTG
GGACTCCAAGTTCAGTGCTATAGGCCTGGGGCAGGGTATTACAGTCAGGCTGGCCTTGGCTGGA
AAAAGCTGATGTGGGTTTACAGTTTTGGGAATAAATGTGTCAATCCAA

hide sequence

RefSeq Acc Id:

XM_006243756 ⟹ XP_006243818

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	109,558,975 - 109,569,778 (+)	NCBI
Rnor_6.0	8	117,648,794 - 117,659,376 (+)	NCBI
Rnor_5.0	8	116,992,424 - 117,003,189 (+)	NCBI

Sequence:

show sequence

AAAACTTGTCTGGAAAAAAAAAAAAAATGGAGGTGGGGTGGGGTTGGCCTTGAGGACCGCTGTG
CCAGGGACTCAGATGGAAAATCTGACTGTGATACTCATAGCTTGGTGGTACAGACCCTACAGAC
CTAGATCTCCCACAGCTGAGGTTCGGGTCCCTGGTTACACACCTAGGCATCCAGATCATTCAAG
AATTTCTCCTTTACATAAAGTGGGGGAACTTCTACAAAGCAATTAGGTCCAGCCATTTAGGGGC
ACAGAGGCCAAGGGTAGCACTGGCCTTTCGCTCCAGTCCTCTAGGCCCGGCAGAACGCTCCCAG
CTCCAAGTAGAAGGTTAACAAGCTGCAACTAACTGGAATTGCCAGCAAGGACAGAAGCTAGGCC
GACGAGGAGGAAAGGGTTAAATTTTTATTCTCCCGGCTCGCCCCGCCCGAAGAGTGTGACTTAG
GTTCCACTCCCAGAATTCTGATTGGCCTGATCATGCACATCCTAGCGGTGGCGCTTGACGCCGG
CCTCCTCCTTGGCCTGGCGCCACCTCCTACCCGGTAGTGGCCTCCTGGGGGAGCTGTCTGAAAA
AGCCGCACACGAGCTACCCTCTGAGGGTCATGGGACTGCCTGATGGGTCCGGTGAGTTGCAGGG
CGCCGTCCGAATTCCTCGTGTCCGCGAAGCGCTGGTAGTTCTGTGACTCCCGGCCTGGGTCAAT
TCAGGAAGGGAACCGGAATTTCCCGGCTGCAGAGCCTTGGTTTAGCACCTTGCCGATTTTCCGC
AGGAGGTTATCCATCAATAACGAGGGATGGGGGCGGGATCCGGCGCGACCCCAGCTCTTGAGGG
TTGTACTGAACGTCCCTGGAGTGCTAATAAGGGTGCTGCGGGGAAGTTGCTGCCTGCCAAGGAG
CCCTGGCACGGGAGGTGTGCCAGCTGGGCGCGTTGGGACTGGGAGAGAAACCGCTGCAAGACGG
GCTCTAGCCGGGCTGTGGACCAACAGCGGCCTCAGTCGGCGGGGGTTATGTGCGCTCCTGTCGC
TGCCCGCCCTTGTGCCCTCCCAAAGGGAGGTGCCAAGCATCAAGGCTCCGCCTCCCCAGGCGCT
TGCTGCCTGGTAAGGGGAGGGAGCCCTTTAAGAAGACTTGACAGATCTTGAAGGAGGGGAGAGG
GGCCTCTGAGAGCTCCTGGAGTCGGCCAGTGCAGAGAATCACTGAAGATCTTCCTTGCGTCTGC
ATTGCTCCCTCCTCCAATTGGATACCCAGGTTAGAGGGTCTTCCAAGACCACGGGACACAGCAG
ACGCAGGCTCTCCTGTCTGCAACCCAAGAAATGGAGCTGGAAAGGAGAGACTACCATGTGGAAA
GGCCATTGCTGAACCAAGAGCAGCTAGAGGATCTGGGGCACTGGGGTCCAGTGTCGAAGACCCA
CCCGTGGCGAACTTGGTTTCGATGCTCCCGTGCTCGGGCCAAATCTCTTCTGATCCAGCATGTT
CCGGTCTTGGGCTGGTTACCCCGATATCCTGTGCGTGAGTGGCTCTTGGGTGACCTGTTATCCG
GCCTGAGTGTGGCCATCATGCAGCTTCCACAGGGCTTGGCCTATGCCCTCCTGGCGGGATTGCC
TCCTATGTTTGGCCTGTACAGTTCTTTCTACCCTGTCTTCGTCTACTTCCTGTTTGGTACCTCT
AGACACATCTCTGTGGGGACCTTTGCTGTCATGTCTGTGATGGTGGGCGGCGTGACAGAATCTC
TGACAGCAGATGAGGCCTTCGTGCAAAGCTTGAACACCACAGTCGATGGTGCCCGTGTGCAGGT
GGCCTACACGCTCAGCTTCCTGGTTGGCCTTTTCCAGGTGGGGCTGGGCCTGGTACACTTCGGT
TTTGTGGTCACCTACCTGTCAGAGCCTTTGGTCCGCAGCTATACCACGGCTGCCTCTGTGCAAG
TCCTCGTCTCCCAGCTCAAGTATGTGTTTGGCATCAAACTCAACAGTCACTCTGGGCCACTGTC
CGTTATCTATACAGTGCTGGAGGTCTGTGCCCAGCTGCCTAAGACTGTGCCTGGCACCGTGGTC
ACAGCAATCGTGGCAGGAGTGGTGTTGGTGCTGGTTAAACTGCTGAATGAAAAACTGCGCCGAC
GTCTGCCCTTGCCCATTCCTGGGGAACTACTCACGCTAATTGGGGCCACCGCTATTTCCTACGG
TGTGAAGCTGAATGACAGATTCAAGGTGGATGTGGTGGGCAACATCACCACAGGGCTGATACCC
CCAGTGGCACCCAAGACGGAGCTGTTTGCAACGCTTGTGGGAAACGCCTTCGCCATTGCCGTGG
TGGGCTTCGCCATTGCCATCTCACTGGGGAAGATCTTTGCCCTGAGGCATGGCTACCGTGTGGA
CAGCAACCAGGAGCTGGTAGCCCTTGGCCTCAGTAACCTCATCGGAGGCTTCTTCCAGTGCTTT
CCTGTGAGCTGCTCCATGTCTCGGAGCTTGGTACAGGAGAGCACGGGAGGCAACACGCAGATTG
CTGGAGCCGTATCTTCCCTCTTTATACTCCTAATTATTGTCAAACTTGGGGAACTCTTCCGAGA
CCTGCCCAAGGCCGTCCTGGCAGCTGTTATCATTGTGAACCTCAAGGGTATGATGAAGCAGTTC
TCTGACATCTGCTCTCTCTGGAAGGCAAATCGAGTGGACCTGCTAATCTGGCTGGTGACCTTTG
TGGCCACGATCCTGCTGAACCTGGACATCGGCCTGGCAGTCTCCATAGTCTTCTCCTTGCTGCT
CGTGGTGATCCGAATGCAGCTGCCCCATTACTCCGTCCTGGGGCAGGTGCCAGATACGGATATT
TATAGAGACGTGGCAGAATACTCAGGGGCCAAGGAGGTCCCGGGTGTGAAAGTCTTCCGTTCCT
CAGCCACCATGTACTTCGCCAACGCTGAGCTCTACAGTGATTCGCTGAAAAAGAAGTGTGGCGT
GGACGTTGACCGCCTCATCACCCAGAAAAAGAAACGAATCAAGAAGCAGGAGATGAAGATAAAG
CGAATGAACAAAGCCAAGAAGTCCCAGAAACAGGCTGCTTCTTCCAAGATCTCCTCAGTTTCTG
TCAACGTCAACACCAACTTTGAAGACATCAAAAGCAATGATGTTGAGGGCTCTGAGGCCAAGGT
GCACCAAGGGGAGGAGTTGGAGGATGTAGTCGCCAGCAATCAAGAAGATGCCAAGCCCCCAATC
ATGACCTCACTGAAGGCCCTGGGCCTGCCTCAGCCAGACTTCCATAGCCTCATCCTAGACTTGA
GCACTGTCTCCTTTGTGGACACTGTGTGCATCAAGAGCCTGAAAAACATTTTCCGTGACTTCCG
GGAGATCGAAGTGGAAGTATATATCGCAGCCTGTTACAGTCCTGTGGTCACCCAGCTTGAAGCT
GGACACTTCTTTGATGAGTCTATCACTAAGCAGCACGTCTTTGCCTCTGTTCATGACGCCGTGA
CCTTTGCCCTCCACCACCGGAAGTCTGGCCCTAAGAGCCCTGTTTTGGCCACCAAACTCTGACT
TTGCTGCAGGAGACTGCCTACCTCTGGAGGTTGTGACAGGTCACCCTCATGAACCCCCCTGCCT
CTGAGCCACCTCCAGGTGCCACCTGGGACTCCATTCCATGTACCTGCACATACAACTCATGGGT
GGATGCCCTGGGACTCCAAGTTCAGTGCTATAGGCCTGGGGCAGGGTATTACAGTCAGGCTGGC
CTTGGCTGGAAAAAGCTGATGTGGGTTTACAGTTTTGGGAATAAATGTGTCAATCCAA

hide sequence

RefSeq Acc Id:

XM_006243757 ⟹ XP_006243819

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	109,558,972 - 109,569,778 (+)	NCBI
Rnor_6.0	8	117,648,792 - 117,659,376 (+)	NCBI
Rnor_5.0	8	116,992,424 - 117,003,189 (+)	NCBI

Sequence:

show sequence

AGAAAACTTGTCTGGAAAAAAAAAAAAAATGGAGGTGGGGTGGGGTTGGCCTTGAGGACCGCTG
TGCCAGGGACTCAGATGGAAAATCTGACTGTGATACTCATAGCTTGGTGGTACAGACCCTACAG
ACCTAGATCTCCCACAGCTGAGGTTCGGGTCCCTGGTTACACACCTAGGCATCCAGATCATTCA
AGAATTTCTCCTTTACATAAAGTGGGGGAACTTCTACAAAGCAATTAGGTCCAGCCATTTAGGG
GCACAGAGGCCAAGGGTAGCACTGGCCTTTCGCTCCAGTCCTCTAGGCCCGGCAGAACGCTCCC
AGCTCCAAGTAGAAGGTTAACAAGCTGCAACTAACTGGAATTGCCAGCAAGGACAGAAGCTAGG
CCGACGAGGAGGAAAGGGTTAAATTTTTATTCTCCCGGCTCGCCCCGCCCGAAGAGTGTGACTT
AGGTTCCACTCCCAGAATTCTGATTGGCCTGATCATGCACATCCTAGCGGTGGCGCTTGACGCC
GGCCTCCTCCTTGGCCTGGCGCCACCTCCTACCCGGTAGTGGCCTCCTGGGGGAGCTGTCTGAA
AAAGCCGCACACGAGCTACCCTCTGAGGGTCATGGGACTGCCTGATGGGTCCGACCACGGGACA
CAGCAGACGCAGGCTCTCCTGTCTGCAACCCAAGAAATGGAGCTGGAAAGGAGAGACTACCATG
TGGAAAGGCCATTGCTGAACCAAGAGCAGCTAGAGGATCTGGGGCACTGGGGTCCAGTGTCGAA
GACCCACCCGTGGCGAACTTGGTTTCGATGCTCCCGTGCTCGGGCCAAATCTCTTCTGATCCAG
CATGTTCCGGTCTTGGGCTGGTTACCCCGATATCCTGTGCGTGAGTGGCTCTTGGGTGACCTGT
TATCCGGCCTGAGTGTGGCCATCATGCAGCTTCCACAGGGCTTGGCCTATGCCCTCCTGGCGGG
ATTGCCTCCTATGTTTGGCCTGTACAGTTCTTTCTACCCTGTCTTCGTCTACTTCCTGTTTGGT
ACCTCTAGACACATCTCTGTGGGGACCTTTGCTGTCATGTCTGTGATGGTGGGCGGCGTGACAG
AATCTCTGACAGCAGATGAGGCCTTCGTGCAAAGCTTGAACACCACAGTCGATGGTGCCCGTGT
GCAGGTGGCCTACACGCTCAGCTTCCTGGTTGGCCTTTTCCAGGTGGGGCTGGGCCTGGTACAC
TTCGGTTTTGTGGTCACCTACCTGTCAGAGCCTTTGGTCCGCAGCTATACCACGGCTGCCTCTG
TGCAAGTCCTCGTCTCCCAGCTCAAGTATGTGTTTGGCATCAAACTCAACAGTCACTCTGGGCC
ACTGTCCGTTATCTATACAGTGCTGGAGGTCTGTGCCCAGCTGCCTAAGACTGTGCCTGGCACC
GTGGTCACAGCAATCGTGGCAGGAGTGGTGTTGGTGCTGGTTAAACTGCTGAATGAAAAACTGC
GCCGACGTCTGCCCTTGCCCATTCCTGGGGAACTACTCACGCTAATTGGGGCCACCGCTATTTC
CTACGGTGTGAAGCTGAATGACAGATTCAAGGTGGATGTGGTGGGCAACATCACCACAGGGCTG
ATACCCCCAGTGGCACCCAAGACGGAGCTGTTTGCAACGCTTGTGGGAAACGCCTTCGCCATTG
CCGTGGTGGGCTTCGCCATTGCCATCTCACTGGGGAAGATCTTTGCCCTGAGGCATGGCTACCG
TGTGGACAGCAACCAGGAGCTGGTAGCCCTTGGCCTCAGTAACCTCATCGGAGGCTTCTTCCAG
TGCTTTCCTGTGAGCTGCTCCATGTCTCGGAGCTTGGTACAGGAGAGCACGGGAGGCAACACGC
AGATTGCTGGAGCCGTATCTTCCCTCTTTATACTCCTAATTATTGTCAAACTTGGGGAACTCTT
CCGAGACCTGCCCAAGGCCGTCCTGGCAGCTGTTATCATTGTGAACCTCAAGGGTATGATGAAG
CAGTTCTCTGACATCTGCTCTCTCTGGAAGGCAAATCGAGTGGACCTGCTAATCTGGCTGGTGA
CCTTTGTGGCCACGATCCTGCTGAACCTGGACATCGGCCTGGCAGTCTCCATAGTCTTCTCCTT
GCTGCTCGTGGTGATCCGAATGCAGCTGCCCCATTACTCCGTCCTGGGGCAGGTGCCAGATACG
GATATTTATAGAGACGTGGCAGAATACTCAGGGGCCAAGGAGGTCCCGGGTGTGAAAGTCTTCC
GTTCCTCAGCCACCATGTACTTCGCCAACGCTGAGCTCTACAGTGATTCGCTGAAAAAGAAGTG
TGGCGTGGACGTTGACCGCCTCATCACCCAGAAAAAGAAACGAATCAAGAAGCAGGAGATGAAG
ATAAAGCGAATGAACAAAGCCAAGAAGTCCCAGAAACAGGTGCACCAAGGGGAGGAGTTGGAGG
ATGTAGTCGCCAGCAATCAAGAAGATGCCAAGCCCCCAATCATGACCTCACTGAAGGCCCTGGG
CCTGCCTCAGCCAGACTTCCATAGCCTCATCCTAGACTTGAGCACTGTCTCCTTTGTGGACACT
GTGTGCATCAAGAGCCTGAAAAACATTTTCCGTGACTTCCGGGAGATCGAAGTGGAAGTATATA
TCGCAGCCTGTTACAGTCCTGTGGTCACCCAGCTTGAAGCTGGACACTTCTTTGATGAGTCTAT
CACTAAGCAGCACGTCTTTGCCTCTGTTCATGACGCCGTGACCTTTGCCCTCCACCACCGGAAG
TCTGGCCCTAAGAGCCCTGTTTTGGCCACCAAACTCTGACTTTGCTGCAGGAGACTGCCTACCT
CTGGAGGTTGTGACAGGTCACCCTCATGAACCCCCCTGCCTCTGAGCCACCTCCAGGTGCCACC
TGGGACTCCATTCCATGTACCTGCACATACAACTCATGGGTGGATGCCCTGGGACTCCAAGTTC
AGTGCTATAGGCCTGGGGCAGGGTATTACAGTCAGGCTGGCCTTGGCTGGAAAAAGCTGATGTG
GGTTTACAGTTTTGGGAATAAATGTGTCAATCCAA

hide sequence

RefSeq Acc Id:

XM_006243758 ⟹ XP_006243820

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	109,558,968 - 109,568,198 (+)	NCBI
Rnor_6.0	8	117,648,792 - 117,657,807 (+)	NCBI
Rnor_5.0	8	116,992,424 - 117,003,189 (+)	NCBI

Sequence:

show sequence

AGAAAACTTGTCTGGAAAAAAAAAAAAAATGGAGGTGGGGTGGGGTTGGCCTTGAGGACCGCTG
TGCCAGGGACTCAGATGGAAAATCTGACTGTGATACTCATAGCTTGGTGGTACAGACCCTACAG
ACCTAGATCTCCCACAGCTGAGGTTCGGGTCCCTGGTTACACACCTAGGCATCCAGATCATTCA
AGAATTTCTCCTTTACATAAAGTGGGGGAACTTCTACAAAGCAATTAGGTCCAGCCATTTAGGG
GCACAGAGGCCAAGGGTAGCACTGGCCTTTCGCTCCAGTCCTCTAGGCCCGGCAGAACGCTCCC
AGCTCCAAGTAGAAGGTTAACAAGCTGCAACTAACTGGAATTGCCAGCAAGGACAGAAGCTAGG
CCGACGAGGAGGAAAGGGTTAAATTTTTATTCTCCCGGCTCGCCCCGCCCGAAGAGTGTGACTT
AGGTTCCACTCCCAGAATTCTGATTGGCCTGATCATGCACATCCTAGCGGTGGCGCTTGACGCC
GGCCTCCTCCTTGGCCTGGCGCCACCTCCTACCCGGTAGTGGCCTCCTGGGGGAGCTGTCTGAA
AAAGCCGCACACGAGCTACCCTCTGAGGGTCATGGGACTGCCTGATGGGTCCGACCACGGGACA
CAGCAGACGCAGGCTCTCCTGTCTGCAACCCAAGAAATGGAGCTGGAAAGGAGAGACTACCATG
TGGAAAGGCCATTGCTGAACCAAGAGCAGCTAGAGGATCTGGGGCACTGGGGTCCAGTGTCGAA
GACCCACCCGTGGCGAACTTGGTTTCGATGCTCCCGTGCTCGGGCCAAATCTCTTCTGATCCAG
CATGTTCCGGTCTTGGGCTGGTTACCCCGATATCCTGTGCGTGAGTGGCTCTTGGGTGACCTGT
TATCCGGCCTGAGTGTGGCCATCATGCAGCTTCCACAGGGCTTGGCCTATGCCCTCCTGGCGGG
ATTGCCTCCTATGTTTGGCCTGTACAGTTCTTTCTACCCTGTCTTCGTCTACTTCCTGTTTGGT
ACCTCTAGACACATCTCTGTGGGGACCTTTGCTGTCATGTCTGTGATGGTGGGCGGCGTGACAG
AATCTCTGACAGCAGATGAGGCCTTCGTGCAAAGCTTGAACACCACAGTCGATGGTGCCCGTGT
GCAGGTGGCCTACACGCTCAGCTTCCTGGTTGGCCTTTTCCAGGTGGGGCTGGGCCTGGTACAC
TTCGGTTTTGTGGTCACCTACCTGTCAGAGCCTTTGGTCCGCAGCTATACCACGGCTGCCTCTG
TGCAAGTCCTCGTCTCCCAGCTCAAGTATGTGTTTGGCATCAAACTCAACAGTCACTCTGGGCC
ACTGTCCGTTATCTATACAGTGCTGGAGGTCTGTGCCCAGCTGCCTAAGACTGTGCCTGGCACC
GTGGTCACAGCAATCGTGGCAGGAGTGGTGTTGGTGCTGGTTAAACTGCTGAATGAAAAACTGC
GCCGACGTCTGCCCTTGCCCATTCCTGGGGAACTACTCACGCTAATTGGGGCCACCGCTATTTC
CTACGGTGTGAAGCTGAATGACAGATTCAAGGTGGATGTGGTGGGCAACATCACCACAGGGCTG
ATACCCCCAGTGGCACCCAAGACGGAGCTGTTTGCAACGCTTGTGGGAAACGCCTTCGCCATTG
CCGTGGTGGGCTTCGCCATTGCCATCTCACTGGGGAAGATCTTTGCCCTGAGGCATGGCTACCG
TGTGGACAGCAACCAGGAGCTGGTAGCCCTTGGCCTCAGTAACCTCATCGGAGGCTTCTTCCAG
TGCTTTCCTGTGAGCTGCTCCATGTCTCGGAGCTTGGTACAGGAGAGCACGGGAGGCAACACGC
AGATTGCTGGAGCCGTATCTTCCCTCTTTATACTCCTAATTATTGTCAAACTTGGGGAACTCTT
CCGAGACCTGCCCAAGGCCGTCCTGGCAGCTGTTATCATTGTGAACCTCAAGGGTATGATGAAG
CAGTTCTCTGACATCTGCTCTCTCTGGAAGGCAAATCGAGTGGACCTGCTAATCTGGCTGGTGA
CCTTTGTGGCCACGATCCTGCTGAACCTGGACATCGGCCTGGCAGTCTCCATAGTCTTCTCCTT
GCTGCTCGTGGTGATCCGAATGCAGCTGCCCCATTACTCCGTCCTGGGGCAGGTGCCAGATACG
GATATTTATAGAGACGTGGCAGAATACTCAGGGGCCAAGGAGGTCCCGGGTGTGAAAGTCTTCC
GTTCCTCAGCCACCATGTACTTCGCCAACGCTGAGCTCTACAGTGATTCGCTGAAAAAGAAGTG
TGGCGTGGACGTTGACCGCCTCATCACCCAGAAAAAGAAACGAATCAAGAAGCAGGAGATGAAG
ATAAAGCGAATGAACAAAGCCAAGAAGTCCCAGAAACAGGCTGCTTCTTCCAAGATCTCCTCAG
TTTCTGTCAACGTCAACACCAACTTTGAAGACATCAAAAGCAATGATGTTGAGGGCTCTGAGGC
CAAGTCTCAGAAAACTGACCTAGATGTGACAAGACCCCACAGCCTATGCTCATGGATAGAAGAA
AGGTCTTGGGAACATTGGGCAAACTAGGGGTCAAGAGGGATGCCAAGTTTAACCAAAGATTCAG
ACAGGTGCACCAAGGGGAGGAGTTGGAGGATGTAGTCGCCAGCAATCAAGAAGATGCCAAGCCC
CCAATCATGACCTC

hide sequence

RefSeq Acc Id:

XM_039081239 ⟹ XP_038937167

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	109,558,975 - 109,569,778 (+)	NCBI

RefSeq Acc Id:

XR_005487796

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	109,558,970 - 109,566,239 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001137289	(Get FASTA)	NCBI Sequence Viewer
	XP_006243817	(Get FASTA)	NCBI Sequence Viewer
	XP_006243818	(Get FASTA)	NCBI Sequence Viewer
	XP_006243819	(Get FASTA)	NCBI Sequence Viewer
	XP_006243820	(Get FASTA)	NCBI Sequence Viewer
	XP_038937167	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77134	(Get FASTA)	NCBI Sequence Viewer
	EDL77135	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001137289 ⟸ NM_001143817

- UniProtKB:

D3Z9I5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGLPDGSDHGTQQTQALLSATQEMELERRDYHVERPLLNQEQLEDLGHWGPVSKTHPWRTWFRC
SRARAKSLLIQHVPVLGWLPRYPVREWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPMFGLYSS
FYPVFVYFLFGTSRHISVGTFAVMSVMVGGVTESLTADEAFVQSLNTTVDGARVQVAYTLSFLV
GLFQVGLGLVHFGFVVTYLSEPLVRSYTTAASVQVLVSQLKYVFGIKLNSHSGPLSVIYTVLEV
CAQLPKTVPGTVVTAIVAGVVLVLVKLLNEKLRRRLPLPIPGELLTLIGATAISYGVKLNDRFK
VDVVGNITTGLIPPVAPKTELFATLVGNAFAIAVVGFAIAISLGKIFALRHGYRVDSNQELVAL
GLSNLIGGFFQCFPVSCSMSRSLVQESTGGNTQIAGAVSSLFILLIIVKLGELFRDLPKAVLAA
VIIVNLKGMMKQFSDICSLWKANRVDLLIWLVTFVATILLNLDIGLAVSIVFSLLLVVIRMQLP
HYSVLGQVPDTDIYRDVAEYSGAKEVPGVKVFRSSATMYFANAELYSDSLKKKCGVDVDRLITQ
KKKRIKKQEMKIKRMNKAKKSQKQAASSKISSVSVNVNTNFEDIKSNDVEGSEAKVHQGEELED
VVASNQEDAKPPIMTSLKALGLPQPDFHSLILDLSTVSFVDTVCIKSLKNIFRDFREIEVEVYI
AACYSPVVTQLEAGHFFDESITKQHVFASVHDAVTFALHHRKSGPKSPVLATKL

hide sequence

RefSeq Acc Id:

XP_006243820 ⟸ XM_006243758

- Peptide Label:

isoform X3

- Sequence:

show sequence

MGLPDGSDHGTQQTQALLSATQEMELERRDYHVERPLLNQEQLEDLGHWGPVSKTHPWRTWFRC
SRARAKSLLIQHVPVLGWLPRYPVREWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPMFGLYSS
FYPVFVYFLFGTSRHISVGTFAVMSVMVGGVTESLTADEAFVQSLNTTVDGARVQVAYTLSFLV
GLFQVGLGLVHFGFVVTYLSEPLVRSYTTAASVQVLVSQLKYVFGIKLNSHSGPLSVIYTVLEV
CAQLPKTVPGTVVTAIVAGVVLVLVKLLNEKLRRRLPLPIPGELLTLIGATAISYGVKLNDRFK
VDVVGNITTGLIPPVAPKTELFATLVGNAFAIAVVGFAIAISLGKIFALRHGYRVDSNQELVAL
GLSNLIGGFFQCFPVSCSMSRSLVQESTGGNTQIAGAVSSLFILLIIVKLGELFRDLPKAVLAA
VIIVNLKGMMKQFSDICSLWKANRVDLLIWLVTFVATILLNLDIGLAVSIVFSLLLVVIRMQLP
HYSVLGQVPDTDIYRDVAEYSGAKEVPGVKVFRSSATMYFANAELYSDSLKKKCGVDVDRLITQ
KKKRIKKQEMKIKRMNKAKKSQKQAASSKISSVSVNVNTNFEDIKSNDVEGSEAKSQKTDLDVT
RPHSLCSWIEERSWEHWAN

hide sequence

RefSeq Acc Id:

XP_006243819 ⟸ XM_006243757

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGLPDGSDHGTQQTQALLSATQEMELERRDYHVERPLLNQEQLEDLGHWGPVSKTHPWRTWFRC
SRARAKSLLIQHVPVLGWLPRYPVREWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPMFGLYSS
FYPVFVYFLFGTSRHISVGTFAVMSVMVGGVTESLTADEAFVQSLNTTVDGARVQVAYTLSFLV
GLFQVGLGLVHFGFVVTYLSEPLVRSYTTAASVQVLVSQLKYVFGIKLNSHSGPLSVIYTVLEV
CAQLPKTVPGTVVTAIVAGVVLVLVKLLNEKLRRRLPLPIPGELLTLIGATAISYGVKLNDRFK
VDVVGNITTGLIPPVAPKTELFATLVGNAFAIAVVGFAIAISLGKIFALRHGYRVDSNQELVAL
GLSNLIGGFFQCFPVSCSMSRSLVQESTGGNTQIAGAVSSLFILLIIVKLGELFRDLPKAVLAA
VIIVNLKGMMKQFSDICSLWKANRVDLLIWLVTFVATILLNLDIGLAVSIVFSLLLVVIRMQLP
HYSVLGQVPDTDIYRDVAEYSGAKEVPGVKVFRSSATMYFANAELYSDSLKKKCGVDVDRLITQ
KKKRIKKQEMKIKRMNKAKKSQKQVHQGEELEDVVASNQEDAKPPIMTSLKALGLPQPDFHSLI
LDLSTVSFVDTVCIKSLKNIFRDFREIEVEVYIAACYSPVVTQLEAGHFFDESITKQHVFASVH
DAVTFALHHRKSGPKSPVLATKL

hide sequence

RefSeq Acc Id:

XP_006243817 ⟸ XM_006243755

- Peptide Label:

isoform X1

- Sequence:

show sequence

MELERRDYHVERPLLNQEQLEDLGHWGPVSKTHPWRTWFRCSRARAKSLLIQHVPVLGWLPRYP
VREWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPMFGLYSSFYPVFVYFLFGTSRHISVGTFAV
MSVMVGGVTESLTADEAFVQSLNTTVDGARVQVAYTLSFLVGLFQVGLGLVHFGFVVTYLSEPL
VRSYTTAASVQVLVSQLKYVFGIKLNSHSGPLSVIYTVLEVCAQLPKTVPGTVVTAIVAGVVLV
LVKLLNEKLRRRLPLPIPGELLTLIGATAISYGVKLNDRFKVDVVGNITTGLIPPVAPKTELFA
TLVGNAFAIAVVGFAIAISLGKIFALRHGYRVDSNQELVALGLSNLIGGFFQCFPVSCSMSRSL
VQESTGGNTQIAGAVSSLFILLIIVKLGELFRDLPKAVLAAVIIVNLKGMMKQFSDICSLWKAN
RVDLLIWLVTFVATILLNLDIGLAVSIVFSLLLVVIRMQLPHYSVLGQVPDTDIYRDVAEYSGA
KEVPGVKVFRSSATMYFANAELYSDSLKKKCGVDVDRLITQKKKRIKKQEMKIKRMNKAKKSQK
QAASSKISSVSVNVNTNFEDIKSNDVEGSEAKVHQGEELEDVVASNQEDAKPPIMTSLKALGLP
QPDFHSLILDLSTVSFVDTVCIKSLKNIFRDFREIEVEVYIAACYSPVVTQLEAGHFFDESITK
QHVFASVHDAVTFALHHRKSGPKSPVLATKL

hide sequence

RefSeq Acc Id:

XP_006243818 ⟸ XM_006243756

- Peptide Label:

isoform X1

- Sequence:

show sequence

MELERRDYHVERPLLNQEQLEDLGHWGPVSKTHPWRTWFRCSRARAKSLLIQHVPVLGWLPRYP
VREWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPMFGLYSSFYPVFVYFLFGTSRHISVGTFAV
MSVMVGGVTESLTADEAFVQSLNTTVDGARVQVAYTLSFLVGLFQVGLGLVHFGFVVTYLSEPL
VRSYTTAASVQVLVSQLKYVFGIKLNSHSGPLSVIYTVLEVCAQLPKTVPGTVVTAIVAGVVLV
LVKLLNEKLRRRLPLPIPGELLTLIGATAISYGVKLNDRFKVDVVGNITTGLIPPVAPKTELFA
TLVGNAFAIAVVGFAIAISLGKIFALRHGYRVDSNQELVALGLSNLIGGFFQCFPVSCSMSRSL
VQESTGGNTQIAGAVSSLFILLIIVKLGELFRDLPKAVLAAVIIVNLKGMMKQFSDICSLWKAN
RVDLLIWLVTFVATILLNLDIGLAVSIVFSLLLVVIRMQLPHYSVLGQVPDTDIYRDVAEYSGA
KEVPGVKVFRSSATMYFANAELYSDSLKKKCGVDVDRLITQKKKRIKKQEMKIKRMNKAKKSQK
QAASSKISSVSVNVNTNFEDIKSNDVEGSEAKVHQGEELEDVVASNQEDAKPPIMTSLKALGLP
QPDFHSLILDLSTVSFVDTVCIKSLKNIFRDFREIEVEVYIAACYSPVVTQLEAGHFFDESITK
QHVFASVHDAVTFALHHRKSGPKSPVLATKL

hide sequence

RefSeq Acc Id:

ENSRNOP00000027762 ⟸ ENSRNOT00000027762

RefSeq Acc Id:	XP_038937167 ⟸ XM_039081239
- Peptide Label:	isoform X1

RefSeq Acc Id:

ENSRNOP00000095796 ⟸ ENSRNOT00000114709

Protein Domains

STAS

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3Z9I5-F1-model_v2	AlphaFold	D3Z9I5	1-758	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1310197	AgrOrtholog
BioCyc Gene	G2FUF-29111	BioCyc
Ensembl Genes	ENSRNOG00000020450	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000027762	ENTREZGENE
	ENSRNOP00000027762.5	UniProtKB/TrEMBL
	ENSRNOP00000095796	ENTREZGENE
	ENSRNOP00000095796.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000027762	ENTREZGENE
	ENSRNOT00000027762.8	UniProtKB/TrEMBL
	ENSRNOT00000114709	ENTREZGENE
	ENSRNOT00000114709.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.750.24	UniProtKB/TrEMBL
InterPro	S04_transporter_CS	UniProtKB/TrEMBL
	SO4_transptr/STAS	UniProtKB/TrEMBL
	STAS_dom_sf	UniProtKB/TrEMBL
	SulP_transpt	UniProtKB/TrEMBL
	Sulph_transpt	UniProtKB/TrEMBL
KEGG Report	rno:301010	UniProtKB/TrEMBL
NCBI Gene	301010	ENTREZGENE
PANTHER	PTHR11814	UniProtKB/TrEMBL
	PTHR11814:SF113	UniProtKB/TrEMBL
Pfam	STAS	UniProtKB/TrEMBL
	Sulfate_transp	UniProtKB/TrEMBL
PhenoGen	Slc26a6	PhenoGen
PROSITE	SLC26A	UniProtKB/TrEMBL
	STAS	UniProtKB/TrEMBL
Superfamily-SCOP	STAS	UniProtKB/TrEMBL
TIGRFAMs	sulP	UniProtKB/TrEMBL
UniProt	A0A8I6AS58_RAT	UniProtKB/TrEMBL
	D3Z9I5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc26a6	solute carrier family 26 member 6	Slc26a6	solute carrier family 26 (anion exchanger), member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-02	Slc26a6	solute carrier family 26 (anion exchanger), member 6	Slc26a6	solute carrier family 26, member 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Slc26a6	solute carrier family 26, member 6	Slc26a6_predicted	solute carrier family 26, member 6 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Slc26a6_predicted	solute carrier family 26, member 6 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD