Slc26a6 (solute carrier family 26, member 6) - Rat Genome Database

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Gene: Slc26a6 (solute carrier family 26, member 6) Mus musculus
Analyze
Symbol: Slc26a6
Name: solute carrier family 26, member 6
RGD ID: 1320956
MGI Page MGI
Description: Enables several functions, including PDZ domain binding activity; organic anion transmembrane transporter activity; and sulfate transmembrane transporter activity. Involved in several processes, including cellular response to cAMP; cellular response to fructose stimulus; and mannitol transmembrane transport. Acts upstream of or within several processes, including bicarbonate transport; chloride transport; and formate transport. Located in brush border membrane; sperm midpiece; and vesicle membrane. Orthologous to human SLC26A6 (solute carrier family 26 member 6).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: anion exchange transporter; B930010B04Rik; CFEX; chloride-formate exchanger; Pa; Pat-1; Pat1; pendrin-L1; pendrin-like protein 1; putative anion transporter-1; solute carrier family 26 member 6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,731,239 - 108,742,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,730,482 - 108,742,117 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389108,854,043 - 108,913,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,853,283 - 108,913,049 (+)Ensemblmm10GRCm38
MGSCv379108,814,741 - 108,815,380 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv379108,756,374 - 108,764,474 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369108,711,942 - 108,719,366 (+)NCBIMGSCv36mm8
Celera9108,461,213 - 108,471,055 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.63NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. MGD IEA MGD IEA
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Mouse MP Annotation Import Pipeline RGD automated import pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11459928   PMID:11842009   PMID:12119287   PMID:12139400   PMID:12217875   PMID:12381535   PMID:12477932  
PMID:14681479   PMID:14691545   PMID:15203903   PMID:15498800   PMID:15548529   PMID:15574486   PMID:16141072   PMID:16141073   PMID:16141316   PMID:16373425   PMID:16472591   PMID:16532010  
PMID:16606687   PMID:16901991   PMID:17053783   PMID:17120764   PMID:17120766   PMID:17151144   PMID:17170027   PMID:17763866   PMID:18046080   PMID:18174209   PMID:18496516   PMID:18565999  
PMID:18799693   PMID:18930060   PMID:19033647   PMID:19121635   PMID:19812358   PMID:20150244   PMID:20164375   PMID:20969732   PMID:21068358   PMID:21267068   PMID:21873635   PMID:21976599  
PMID:22021714   PMID:22517357   PMID:22594923   PMID:22674389   PMID:22895259   PMID:23542070   PMID:23660504   PMID:23833257   PMID:23933580   PMID:24018950   PMID:24233434   PMID:25880931  
PMID:26394631   PMID:26671068   PMID:27681177   PMID:28526688   PMID:29025768   PMID:29530983   PMID:30118583   PMID:30427220   PMID:30728179   PMID:31139847   PMID:31201468   PMID:31532720  
PMID:32660969   PMID:33205229   PMID:35760786   PMID:36433745   PMID:38349781   PMID:38735402  


Genomics

Comparative Map Data
Slc26a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,731,239 - 108,742,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,730,482 - 108,742,117 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389108,854,043 - 108,913,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,853,283 - 108,913,049 (+)Ensemblmm10GRCm38
MGSCv379108,814,741 - 108,815,380 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv379108,756,374 - 108,764,474 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369108,711,942 - 108,719,366 (+)NCBIMGSCv36mm8
Celera9108,461,213 - 108,471,055 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.63NCBI
SLC26A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38348,625,723 - 48,635,461 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl348,625,718 - 48,635,493 (-)Ensemblhg38GRCh38
GRCh37348,663,156 - 48,672,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,638,160 - 48,647,930 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34348,638,159 - 48,647,930NCBI
Celera348,619,066 - 48,628,836 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef348,721,325 - 48,731,096 (-)NCBIHuRef
CHM1_1348,615,450 - 48,625,220 (-)NCBICHM1_1
T2T-CHM13v2.0348,654,683 - 48,664,421 (-)NCBIT2T-CHM13v2.0
Slc26a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,438,110 - 118,448,271 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8118,438,180 - 118,448,270 (+)EnsemblGRCr8
mRatBN7.28109,558,968 - 109,569,778 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,559,642 - 109,569,778 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8115,177,125 - 115,187,296 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,376,304 - 113,386,477 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,219,103 - 111,229,275 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,648,792 - 117,659,376 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,648,745 - 117,659,804 (+)Ensemblrn6Rnor6.0
Rnor_5.08116,992,424 - 117,003,189 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48113,925,291 - 113,935,357 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8108,853,440 - 108,863,509 (+)NCBICelera
RGSC_v3.18113,944,745 - 113,954,812 (+)NCBI
Cytogenetic Map8q32NCBI
Slc26a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955532713,215 - 722,817 (-)Ensembl
ChiLan1.0NW_004955532713,725 - 723,190 (-)NCBIChiLan1.0ChiLan1.0
SLC26A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2248,600,106 - 48,609,969 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1348,604,874 - 48,615,446 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0348,547,277 - 48,557,099 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1349,629,237 - 49,639,033 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,629,237 - 49,639,039 (-)EnsemblpanPan2panpan1.1
Slc26a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,665,342 - 63,675,179 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529424,720 - 435,293 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936529425,839 - 435,590 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,317,877 - 31,330,580 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11331,319,287 - 31,330,649 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,582,925 - 34,594,273 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC26A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,035,676 - 10,046,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,035,478 - 10,045,304 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041157,044,896 - 157,054,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc26a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247302,640,208 - 2,649,203 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247302,639,940 - 2,649,358 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Slc26a6
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18100,185,646 - 100,195,930 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Slc26a6
258 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:181
Interacting mature miRNAs:192
Transcripts:ENSMUST00000098376
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976417989110418183Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959897283109089068Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001408387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_176680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB099881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC168054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02060806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF248494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY032863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY049076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM950449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN692543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000098376   ⟹   ENSMUSP00000095979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,854,037 - 108,912,558 (+)Ensembl
Ensembl Acc Id: ENSMUST00000188557   ⟹   ENSMUSP00000140849
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,731,334 - 108,742,096 (+)Ensembl
GRCm38.p6 Ensembl9108,854,135 - 108,862,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000191404   ⟹   ENSMUSP00000140982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9108,912,410 - 108,913,049 (+)Ensembl
Ensembl Acc Id: ENSMUST00000192507   ⟹   ENSMUSP00000141336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,730,547 - 108,742,110 (+)Ensembl
GRCm38.p6 Ensembl9108,853,348 - 108,862,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000192559   ⟹   ENSMUSP00000141632
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,731,236 - 108,738,027 (+)Ensembl
GRCm38.p6 Ensembl9108,854,037 - 108,860,828 (+)Ensembl
Ensembl Acc Id: ENSMUST00000193291   ⟹   ENSMUSP00000142250
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,731,242 - 108,739,663 (+)Ensembl
GRCm38.p6 Ensembl9108,854,043 - 108,862,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000193463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,731,273 - 108,742,110 (+)Ensembl
GRCm38.p6 Ensembl9108,854,074 - 108,862,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000193825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,730,482 - 108,731,483 (+)Ensembl
GRCm38.p6 Ensembl9108,853,283 - 108,854,284 (+)Ensembl
Ensembl Acc Id: ENSMUST00000193874   ⟹   ENSMUSP00000141409
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,732,861 - 108,742,112 (+)Ensembl
GRCm38.p6 Ensembl9108,855,662 - 108,862,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000195646
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,731,293 - 108,739,610 (+)Ensembl
GRCm38.p6 Ensembl9108,854,094 - 108,862,143 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239562   ⟹   ENSMUSP00000159445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9108,731,896 - 108,742,117 (+)Ensembl
RefSeq Acc Id: NM_001408387   ⟹   NP_001395316
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,731,242 - 108,742,112 (+)NCBI
RefSeq Acc Id: NM_134420   ⟹   NP_599252
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,731,242 - 108,742,112 (+)NCBI
GRCm389108,854,043 - 108,913,049 (+)NCBI
MGSCv379108,756,374 - 108,764,474 (+)RGD
Celera9108,461,213 - 108,471,055 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_176680
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,731,242 - 108,742,112 (+)NCBI
RefSeq Acc Id: XM_036154634   ⟹   XP_036010527
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399108,731,239 - 108,742,117 (+)NCBI
Sequence:
RefSeq Acc Id: NP_599252   ⟸   NM_134420
- Peptide Label: isoform 1
- UniProtKB: A0A087WS07 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000140982   ⟸   ENSMUST00000191404
Ensembl Acc Id: ENSMUSP00000141409   ⟸   ENSMUST00000193874
Ensembl Acc Id: ENSMUSP00000142250   ⟸   ENSMUST00000193291
Ensembl Acc Id: ENSMUSP00000140849   ⟸   ENSMUST00000188557
Ensembl Acc Id: ENSMUSP00000141336   ⟸   ENSMUST00000192507
Ensembl Acc Id: ENSMUSP00000141632   ⟸   ENSMUST00000192559
Ensembl Acc Id: ENSMUSP00000095979   ⟸   ENSMUST00000098376
RefSeq Acc Id: XP_036010527   ⟸   XM_036154634
- Peptide Label: isoform X2
- UniProtKB: A0A087WS07 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000159445   ⟸   ENSMUST00000239562
RefSeq Acc Id: NP_001395316   ⟸   NM_001408387
- Peptide Label: isoform 2
- UniProtKB: Q8K142 (UniProtKB/Swiss-Prot),   Q8CJD0 (UniProtKB/Swiss-Prot),   Q8CIW6 (UniProtKB/Swiss-Prot),   Q812E2 (UniProtKB/Swiss-Prot),   Q3TQD3 (UniProtKB/Swiss-Prot),   E9Q4D3 (UniProtKB/Swiss-Prot),   Q923J3 (UniProtKB/Swiss-Prot),   A0A087WS07 (UniProtKB/TrEMBL)
Protein Domains
SLC26A/SulP transporter   STAS

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CIW6-F1-model_v2 AlphaFold Q8CIW6 1-758 view protein structure

Promoters
RGD ID:6845160
Promoter ID:MM_KWN:58829
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000098377,   NM_134420,   UC009RRD.1,   UC009RRE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv369108,755,551 - 108,756,902 (+)MPROMDB
RGD ID:8670934
Promoter ID:EPDNEW_M13498
Type:initiation region
Name:Slc26a6_1
Description:Mus musculus solute carrier family 26, member 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13499  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,854,043 - 108,854,103EPDNEW
RGD ID:8670936
Promoter ID:EPDNEW_M13499
Type:initiation region
Name:Slc26a6_2
Description:Mus musculus solute carrier family 26, member 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M13498  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389108,854,720 - 108,854,780EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2159728 AgrOrtholog
Ensembl Genes ENSMUSG00000023259 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000188557 ENTREZGENE
  ENSMUST00000188557.8 UniProtKB/Swiss-Prot
  ENSMUST00000239562 ENTREZGENE
  ENSMUST00000239562.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.750.24 UniProtKB/Swiss-Prot
InterPro S04_transporter_CS UniProtKB/Swiss-Prot
  SLC26A/SulP_dom UniProtKB/Swiss-Prot
  SLC26A/SulP_fam UniProtKB/Swiss-Prot
  STAS_dom UniProtKB/Swiss-Prot
  STAS_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:171429 UniProtKB/Swiss-Prot
MGD MGI:2159728 ENTREZGENE
NCBI Gene 171429 ENTREZGENE
PANTHER PTHR11814 UniProtKB/Swiss-Prot
Pfam STAS UniProtKB/Swiss-Prot
  Sulfate_transp UniProtKB/Swiss-Prot
PhenoGen Slc26a6 PhenoGen
PROSITE SLC26A UniProtKB/Swiss-Prot
  STAS UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52091 UniProtKB/Swiss-Prot
UniProt A0A087WS07 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A6YW61_MOUSE UniProtKB/TrEMBL
  A0A0A6YWP3_MOUSE UniProtKB/TrEMBL
  E9Q4D3 ENTREZGENE
  Q3TQD3 ENTREZGENE
  Q812E2 ENTREZGENE
  Q8CIW6 ENTREZGENE
  Q8CJD0 ENTREZGENE
  Q8K142 ENTREZGENE
  Q923J3 ENTREZGENE
  S26A6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary E9Q4D3 UniProtKB/Swiss-Prot
  Q3TQD3 UniProtKB/Swiss-Prot
  Q812E2 UniProtKB/Swiss-Prot
  Q8CJD0 UniProtKB/Swiss-Prot
  Q8K142 UniProtKB/Swiss-Prot
  Q923J3 UniProtKB/Swiss-Prot