Slc26a6 (solute carrier family 26 member 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Slc26a6 (solute carrier family 26 member 6) Heterocephalus glaber
Analyze
Symbol: Slc26a6
Name: solute carrier family 26 member 6
RGD ID: 18908388
Description: ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); INVOLVED IN angiotensin-activated signaling pathway (ortholog); bicarbonate transport (ortholog); cellular response to cAMP (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247302,640,208 - 2,649,203 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247302,639,940 - 2,649,358 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc26a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247302,640,208 - 2,649,203 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247302,639,940 - 2,649,358 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SLC26A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38348,625,723 - 48,635,461 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl348,625,723 - 48,635,493 (-)EnsemblGRCh38hg38GRCh38
GRCh37348,663,156 - 48,672,894 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36348,638,160 - 48,647,930 (-)NCBINCBI36Build 36hg18NCBI36
Build 34348,638,159 - 48,647,930NCBI
Celera348,619,066 - 48,628,836 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef348,721,325 - 48,731,096 (-)NCBIHuRef
CHM1_1348,615,450 - 48,625,220 (-)NCBICHM1_1
T2T-CHM13v2.0348,654,683 - 48,664,421 (-)NCBIT2T-CHM13v2.0
Slc26a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,731,239 - 108,742,117 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,730,482 - 108,742,117 (+)EnsemblGRCm39 Ensembl
GRCm389108,854,043 - 108,913,049 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,853,283 - 108,913,049 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,814,741 - 108,815,380 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv379108,756,374 - 108,764,474 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369108,711,942 - 108,719,366 (+)NCBIMGSCv36mm8
Celera9108,461,213 - 108,471,055 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.63NCBI
Slc26a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,438,110 - 118,448,271 (+)NCBIGRCr8
mRatBN7.28109,558,968 - 109,569,778 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,559,642 - 109,569,778 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,177,125 - 115,187,296 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08113,376,304 - 113,386,477 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,219,103 - 111,229,275 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,648,792 - 117,659,376 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,648,745 - 117,659,804 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,992,424 - 117,003,189 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48113,925,291 - 113,935,357 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18113,944,745 - 113,954,812 (+)NCBI
Celera8108,853,440 - 108,863,509 (+)NCBICelera
Cytogenetic Map8q32NCBI
Slc26a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955532713,215 - 722,817 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955532713,725 - 723,190 (-)NCBIChiLan1.0ChiLan1.0
SLC26A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2248,600,106 - 48,609,969 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1348,604,874 - 48,615,446 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0348,547,277 - 48,557,099 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1349,629,237 - 49,639,033 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl349,629,237 - 49,639,039 (-)Ensemblpanpan1.1panPan2
Slc26a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560263,665,342 - 63,675,179 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529424,720 - 435,293 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936529425,839 - 435,590 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC26A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,317,877 - 31,330,580 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,319,287 - 31,330,649 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,582,925 - 34,594,273 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC26A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,035,676 - 10,046,274 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,035,478 - 10,045,304 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041157,044,896 - 157,054,627 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000015789   ⟹   ENSHGLP00000015625
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247302,640,208 - 2,649,203 (-)Ensembl
RefSeq Acc Id: XM_004833964   ⟹   XP_004834021
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247302,639,940 - 2,649,344 (-)NCBI
RefSeq Acc Id: XM_021257948   ⟹   XP_021113607
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247302,639,940 - 2,649,355 (-)NCBI
RefSeq Acc Id: XM_021257990   ⟹   XP_021113649
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247302,639,940 - 2,649,356 (-)NCBI
RefSeq Acc Id: XM_021258129   ⟹   XP_021113788
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247302,639,940 - 2,649,354 (-)NCBI
RefSeq Acc Id: XR_002394743
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247302,639,940 - 2,649,357 (-)NCBI
RefSeq Acc Id: XR_002394769
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247302,641,038 - 2,649,358 (-)NCBI
RefSeq Acc Id: XR_002394774
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247302,640,993 - 2,649,358 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004834021 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113607 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113649 (Get FASTA)   NCBI Sequence Viewer  
  XP_021113788 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015625
Reference Protein Sequences
RefSeq Acc Id: XP_021113649   ⟸   XM_021257990
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021113607   ⟸   XM_021257948
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021113788   ⟸   XM_021258129
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004834021   ⟸   XM_004833964
- Peptide Label: isoform X3
RefSeq Acc Id: ENSHGLP00000015625   ⟸   ENSHGLT00000015789


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000011175 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015789 ENTREZGENE
NCBI Gene Slc26a6 ENTREZGENE