Chchd2l3 (coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Chchd2l3 (coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3) Rattus norvegicus
Analyze
Symbol: Chchd2l3
Name: coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3
RGD ID: 1309819
Description: Predicted to enable DNA-binding transcription factor binding activity and sequence-specific DNA binding activity. Predicted to be involved in several processes, including cellular response to oxidative stress; positive regulation of mitochondrial ATP synthesis coupled electron transport; and regulation of cellular response to hypoxia. Predicted to be located in mitochondrial intermembrane space. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in Parkinson's disease 22. Orthologous to several human genes including CHCHD2 (coiled-coil-helix-coiled-coil-helix domain containing 2); INTERACTS WITH 17alpha-ethynylestradiol; alpha-hexachlorocyclohexane; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Chchd2; coiled-coil-helix-coiled-coil-helix domain containing 2; coiled-coil-helix-coiled-coil-helix domain containing 2-like 3; coiled-coil-helix-coiled-coil-helix domain-containing protein 2; coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial; coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like; coiled-coil-helix-coiled-coil-helix-domain containing protein 2-like 3; coiled-coil-helix-coiled-coil-helix-domain-containing protein 2-like 3; LOC100911516; LOC316643; MGC112750; SCAN domain containing 3 pseudogene; SCAN domain containing 3, pseudogene 1; Scand3-ps1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2994,500,439 - 94,501,110 (-)NCBImRatBN7.2
mRatBN7.2994,500,629 - 94,501,122 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl994,500,432 - 94,501,128 (-)Ensembl
Rnor_6.09101,388,148 - 101,388,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09101,018,487 - 101,019,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.09101,018,677 - 101,019,134 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4927,858,760 - 28,053,369 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.4993,253,912 - 93,254,617 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1993,460,637 - 93,461,304 (-)NCBI
Celera992,034,380 - 92,035,051 (-)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14651853   PMID:18614015   PMID:23303788   PMID:25662902  


Genomics

Comparative Map Data
Chchd2l3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2994,500,439 - 94,501,110 (-)NCBImRatBN7.2
mRatBN7.2994,500,629 - 94,501,122 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl994,500,432 - 94,501,128 (-)Ensembl
Rnor_6.09101,388,148 - 101,388,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.09101,018,487 - 101,019,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.09101,018,677 - 101,019,134 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4927,858,760 - 28,053,369 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.4993,253,912 - 93,254,617 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1993,460,637 - 93,461,304 (-)NCBI
Celera992,034,380 - 92,035,051 (-)NCBICelera
Cytogenetic Map9q36NCBI
CHCHD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38756,101,573 - 56,106,476 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl756,101,573 - 56,106,476 (-)EnsemblGRCh38hg38GRCh38
GRCh37756,169,266 - 56,174,169 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36756,136,760 - 56,141,681 (-)NCBINCBI36hg18NCBI36
Build 34755,943,476 - 55,948,396NCBI
Celera767,222,175 - 67,227,096 (-)NCBI
Cytogenetic Map7p11.2NCBI
HuRef755,983,486 - 55,988,171 (-)NCBIHuRef
CHM1_1756,172,294 - 56,177,215 (-)NCBICHM1_1
T2T-CHM13v2.0756,261,388 - 56,266,291 (-)NCBI
CRA_TCAGchr7v2756,173,513 - 56,178,434 (-)NCBI
Chchd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,910,002 - 129,916,311 (-)NCBIGRCm39mm39
GRCm39 Ensembl5129,909,997 - 129,916,311 (-)Ensembl
GRCm385129,881,161 - 129,887,470 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,881,156 - 129,887,470 (-)EnsemblGRCm38mm10GRCm38
MGSCv375130,357,032 - 130,363,340 (-)NCBIGRCm37mm9NCBIm37
MGSCv365130,165,865 - 130,172,173 (-)NCBImm8
Celera5126,880,556 - 126,886,855 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
Chchd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,255,898 - 8,265,488 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,260,533 - 8,265,488 (-)NCBIChiLan1.0ChiLan1.0
CHCHD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1757,136,723 - 57,141,765 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl757,134,303 - 57,141,765 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0756,714,583 - 56,719,640 (-)NCBIMhudiblu_PPA_v0panPan3
CHCHD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16581,276 - 585,367 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6581,280 - 585,301 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,280,745 - 2,284,839 (-)NCBI
ROS_Cfam_1.06385,111 - 389,203 (-)NCBI
ROS_Cfam_1.0 Ensembl6385,115 - 389,137 (-)Ensembl
UMICH_Zoey_3.16328,861 - 332,963 (-)NCBI
UNSW_CanFamBas_1.06322,956 - 327,041 (-)NCBI
UU_Cfam_GSD_1.06494,144 - 498,243 (-)NCBI
Chchd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,172,517 - 126,175,918 (-)NCBI
SpeTri2.0NW_0049365437,860,432 - 7,864,050 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHCHD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1316,812,409 - 16,819,130 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,065,147 - 17,071,876 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHCHD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,675,522 - 2,680,406 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041179,877,669 - 179,882,552 (+)NCBIVero_WHO_p1.0
Chchd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,278,078 - 8,283,657 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247408,279,416 - 8,283,730 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AV006093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,911,857 - 26,911,991 (+)MAPPERmRatBN7.2
Rnor_6.01230,533,326 - 30,533,459NCBIRnor6.0
Rnor_5.01232,475,094 - 32,475,227UniSTSRnor5.0
RGSC_v3.41227,962,835 - 27,962,968UniSTSRGSC3.4
Celera1228,617,568 - 28,617,701UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
AI711004  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,849,512 - 26,849,697 (+)MAPPERmRatBN7.2
Rnor_6.01230,460,977 - 30,461,161NCBIRnor6.0
Rnor_5.01232,403,406 - 32,403,590UniSTSRnor5.0
RGSC_v3.41228,032,769 - 28,032,953UniSTSRGSC3.4
Celera1228,555,625 - 28,555,809UniSTS
RH 3.4 Map12454.2UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map12q13UniSTS
BF399653  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,870,403 - 26,870,548 (+)MAPPERmRatBN7.2
Rnor_6.01230,489,252 - 30,489,396NCBIRnor6.0
Rnor_5.01232,431,173 - 32,431,317UniSTSRnor5.0
RGSC_v3.41228,004,766 - 28,004,910UniSTSRGSC3.4
Celera1228,576,097 - 28,576,241UniSTS
RH 3.4 Map12452.3UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH141085  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,949,046 - 26,949,238 (+)MAPPERmRatBN7.2
Rnor_6.01230,570,898 - 30,571,089NCBIRnor6.0
Rnor_5.01232,511,526 - 32,511,717UniSTSRnor5.0
RGSC_v3.41227,923,155 - 27,923,346UniSTSRGSC3.4
Celera1228,654,579 - 28,654,770UniSTS
RH 3.4 Map12452.5UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map12q13UniSTS
RH141366  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,853,340 - 26,853,520 (+)MAPPERmRatBN7.2
Rnor_6.01230,464,805 - 30,464,984NCBIRnor6.0
Rnor_5.01232,407,234 - 32,407,413UniSTSRnor5.0
RGSC_v3.41228,028,946 - 28,029,125UniSTSRGSC3.4
Celera1228,559,401 - 28,559,580UniSTS
RH 3.4 Map12446.6UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH129042  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,904,855 - 26,905,052 (+)MAPPERmRatBN7.2
Rnor_6.01230,526,329 - 30,526,525NCBIRnor6.0
Rnor_5.01232,468,097 - 32,468,293UniSTSRnor5.0
RGSC_v3.41227,969,774 - 27,969,970UniSTSRGSC3.4
Celera1228,610,569 - 28,610,765UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map12q13UniSTS
RH134402  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,872,658 - 26,872,850 (+)MAPPERmRatBN7.2
Rnor_6.01230,491,507 - 30,491,698NCBIRnor6.0
Rnor_5.01232,433,428 - 32,433,619UniSTSRnor5.0
RGSC_v3.41228,002,464 - 28,002,655UniSTSRGSC3.4
RGSC_v3.458,729,076 - 8,729,267UniSTSRGSC3.4
Celera1228,578,352 - 28,578,543UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH94823  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,838,588 - 26,838,843 (+)MAPPERmRatBN7.2
Rnor_6.01230,450,052 - 30,450,306NCBIRnor6.0
Rnor_5.01232,392,481 - 32,392,735UniSTSRnor5.0
RGSC_v3.41228,043,624 - 28,043,878UniSTSRGSC3.4
Celera1228,544,700 - 28,544,954UniSTS
RH 3.4 Map12452.5UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map12q13UniSTS
RH142798  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,944,387 - 26,944,488 (+)MAPPERmRatBN7.2
Rnor_6.01230,566,240 - 30,566,340NCBIRnor6.0
Rnor_5.01232,506,868 - 32,506,968UniSTSRnor5.0
RGSC_v3.41227,928,140 - 27,928,240UniSTSRGSC3.4
Celera1228,649,922 - 28,650,022UniSTS
RH 3.4 Map12446.6UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
BE096988  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,829,194 - 26,829,373 (+)MAPPERmRatBN7.2
Rnor_6.01230,441,321 - 30,441,499NCBIRnor6.0
Rnor_5.01232,383,750 - 32,383,928UniSTSRnor5.0
RGSC_v3.41228,052,897 - 28,053,075UniSTSRGSC3.4
Celera1228,535,293 - 28,535,471UniSTS
RH 3.4 Map12444.1UniSTS
Cytogenetic Map9q36UniSTS
BF387881  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,865,581 - 26,865,739 (+)MAPPERmRatBN7.2
Rnor_6.01230,484,432 - 30,484,589NCBIRnor6.0
Rnor_5.01232,426,353 - 32,426,510UniSTSRnor5.0
RGSC_v3.41228,009,473 - 28,009,630UniSTSRGSC3.4
Celera1228,571,289 - 28,571,446UniSTS
RH 3.4 Map12446.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH137104  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,911,814 - 26,912,015 (+)MAPPERmRatBN7.2
Rnor_6.01230,533,283 - 30,533,483NCBIRnor6.0
Rnor_5.01232,475,051 - 32,475,251UniSTSRnor5.0
RGSC_v3.41227,962,811 - 27,963,011UniSTSRGSC3.4
Celera1228,617,525 - 28,617,725UniSTS
RH 3.4 Map12452.5UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH138649  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,882,098 - 26,882,263 (+)MAPPERmRatBN7.2
Rnor_6.01230,500,945 - 30,501,109NCBIRnor6.0
Rnor_5.01232,442,866 - 32,443,030UniSTSRnor5.0
RGSC_v3.41227,993,052 - 27,993,216UniSTSRGSC3.4
Celera1228,587,791 - 28,587,955UniSTS
RH 3.4 Map12453.1UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map12q13UniSTS
RH138684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,941,637 - 26,941,761 (+)MAPPERmRatBN7.2
Rnor_6.01230,563,491 - 30,563,614NCBIRnor6.0
Rnor_5.01232,504,119 - 32,504,242UniSTSRnor5.0
RGSC_v3.41227,930,866 - 27,930,989UniSTSRGSC3.4
Celera1228,647,171 - 28,647,294UniSTS
RH 3.4 Map12454.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH138720  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,853,572 - 26,853,694 (+)MAPPERmRatBN7.2
Rnor_6.01230,465,037 - 30,465,158NCBIRnor6.0
Rnor_5.01232,407,466 - 32,407,587UniSTSRnor5.0
RGSC_v3.41228,028,772 - 28,028,893UniSTSRGSC3.4
Celera1228,559,633 - 28,559,754UniSTS
RH 3.4 Map12449.1UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
AU049267  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,891,740 - 26,891,898 (+)MAPPERmRatBN7.2
Rnor_6.01230,514,883 - 30,515,040NCBIRnor6.0
Rnor_5.01232,456,522 - 32,456,679UniSTSRnor5.0
RGSC_v3.41227,983,406 - 27,983,563UniSTSRGSC3.4
Celera1228,597,455 - 28,597,612UniSTS
Cytogenetic Map9q36UniSTS
Cytogenetic Map12q13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:140
Interacting mature miRNAs:157
Transcripts:ENSRNOT00000071424, ENSRNOT00000071817
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 20 14 14 1 14 36 6 19 1
Below cutoff 1 18 28 16 12 16 1 2 35 23 14 4 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000071424   ⟹   ENSRNOP00000066780
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9101,106,892 - 101,107,575 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000071817   ⟹   ENSRNOP00000065307
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl994,500,432 - 94,501,128 (-)Ensembl
Rnor_6.0 Ensembl9101,388,151 - 101,388,833 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080892   ⟹   ENSRNOP00000069653
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl9101,107,074 - 101,107,535 (-)Ensembl
RefSeq Acc Id: NM_001015019   ⟹   NP_001015019
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2994,500,439 - 94,501,110 (-)NCBI
Rnor_6.09101,388,148 - 101,388,819 (-)NCBI
Rnor_5.09101,018,487 - 101,019,158 (-)NCBI
RGSC_v3.4927,858,760 - 28,053,369 (-)RGD
Celera992,034,380 - 92,035,051 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001015019 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001015019   ⟸   NM_001015019
- Sequence:
RefSeq Acc Id: ENSRNOP00000065307   ⟸   ENSRNOT00000071817
RefSeq Acc Id: ENSRNOP00000066780   ⟸   ENSRNOT00000071424
RefSeq Acc Id: ENSRNOP00000069653   ⟸   ENSRNOT00000080892

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R785-F1-model_v2 AlphaFold M0R785 1-154 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696885
Promoter ID:EPDNEW_R7409
Type:single initiation site
Name:LOC100911516_1
Description:coiled-coil-helix-coiled-coil-helix domain-containing protein2, mitochondrial-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09101,388,833 - 101,388,893EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309819 AgrOrtholog
BioCyc Gene G2FUF-26624 BioCyc
Ensembl Genes ENSRNOG00000051180 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000051286 Ensembl
  ENSRNOG00000065713 UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000065307 ENTREZGENE
  ENSRNOP00000065307.1 UniProtKB/TrEMBL
  ENSRNOP00000085358.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071817 ENTREZGENE
  ENSRNOT00000071817.3 UniProtKB/TrEMBL
  ENSRNOT00000105914.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7388574 IMAGE-MGC_LOAD
KEGG Report rno:316643 UniProtKB/TrEMBL
MGC_CLONE MGC:112750 IMAGE-MGC_LOAD
NCBI Gene 316643 ENTREZGENE
PhenoGen Chchd2l3 PhenoGen
UniProt M0R785_RAT UniProtKB/TrEMBL
  Q5BJB3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-02-09 Chchd2l3  coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3  Chchd2l3  coiled-coil-helix-coiled-coil-helix-domain-containing protein 2-like 3  Name changed 629549 APPROVED
2022-02-09 Chchd2l3  coiled-coil-helix-coiled-coil-helix-domain-containing protein 2-like 3  Chchd2l3  coiled-coil-helix-coiled-coil-helix-domain containing protein 2-like 3  Name changed 629549 APPROVED
2022-02-09 Chchd2l3  coiled-coil-helix-coiled-coil-helix-domain containing protein 2-like 3  Chchd2l3  coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3  Name changed 629549 APPROVED
2022-02-09 Chchd2l3  coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 3  Chchd2l3  coiled-coil-helix-coiled-coil-helix domain containing 2-like 3  Name changed 629549 APPROVED
2022-02-08 Chchd2l3  coiled-coil-helix-coiled-coil-helix domain containing 2-like 3  Chchd2  coiled-coil-helix-coiled-coil-helix domain containing 2  Name and Symbol changed 629549 APPROVED
2022-02-08 Chchd2  coiled-coil-helix-coiled-coil-helix domain containing 2  Scand3-ps1  SCAN domain containing 3, pseudogene 1  Data Merged 737654 PROVISIONAL
2021-03-09 Chchd2  coiled-coil-helix-coiled-coil-helix domain containing 2  LOC100911516  coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like  Data Merged 737654 PROVISIONAL
2012-07-05 LOC100911516  coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-06-10 Scand3-ps1  SCAN domain containing 3, pseudogene 1  LOC684279  similar to coiled-coil-helix-coiled-coil-helix domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-28 LOC684279  similar to coiled-coil-helix-coiled-coil-helix domain containing 2   LOC684279  similar to coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted)  'predicted' is removed from gene name 2292626 APPROVED
2006-11-20 LOC684279  similar to coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Chchd2  coiled-coil-helix-coiled-coil-helix domain containing 2  Chchd2_predicted  coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Chchd2_predicted  coiled-coil-helix-coiled-coil-helix domain containing 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED