Symbol:
Higd2a
Name:
HIG1 hypoxia inducible domain family, member 2A
RGD ID:
1309691
Description:
Predicted to be involved in mitochondrial respirasome assembly. Predicted to act upstream of or within negative regulation of apoptotic process. Predicted to be located in mitochondrial membrane. Predicted to be active in mitochondrion. Orthologous to several human genes including HIGD2A (HIG1 hypoxia inducible domain family member 2A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bis(2-ethylhexyl) phthalate.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
HIG1 domain family member 2A, mitochondrial; HIG1 domain family, member 2A; LOC290999; RGD1309691; similar to RIKEN cDNA 2010110M21
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 10,026,961 - 10,027,885 (-) NCBI GRCr8 mRatBN7.2 17 10,021,853 - 10,022,777 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 10,021,859 - 10,022,796 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 10,036,141 - 10,037,065 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 11,569,506 - 11,570,430 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 10,032,578 - 10,033,502 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 10,558,714 - 10,559,638 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 10,558,714 - 10,559,627 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 12,684,712 - 12,685,636 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 17 16,083,853 - 16,084,777 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 12 1,366,268 - 1,367,095 (+) NCBI Celera 17 10,094,818 - 10,095,742 (-) NCBI Celera Cytogenetic Map 17 p14 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Higd2a Rat 1,2-dimethylhydrazine multiple interactions ISO Higd2a (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of HIGD2A mRNA CTD PMID:22206623 Higd2a Rat 1,2-dimethylhydrazine decreases expression ISO Higd2a (Mus musculus) 6480464 1 and 2-Dimethylhydrazine results in decreased expression of HIGD2A mRNA CTD PMID:22206623 Higd2a Rat 17beta-estradiol increases expression ISO Higd2a (Mus musculus) 6480464 Estradiol results in increased expression of HIGD2A mRNA CTD PMID:39298647 Higd2a Rat 2,3,7,8-tetrachlorodibenzodioxine multiple interactions ISO Higd2a (Mus musculus) 6480464 [Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in decreased methylation of HIGD2A gene CTD PMID:21212295 Higd2a Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression EXP 6480464 Tetrachlorodibenzodioxin results in increased expression of HIGD2A mRNA CTD PMID:34747641 Higd2a Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Higd2a (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of HIGD2A mRNA CTD PMID:21570461 and PMID:24680724 Higd2a Rat 2-hydroxypropanoic acid affects expression ISO HIGD2A (Homo sapiens) 6480464 Lactic Acid affects the expression of HIGD2A mRNA CTD PMID:30851411 Higd2a Rat 4,4'-sulfonyldiphenol increases expression ISO Higd2a (Mus musculus) 6480464 bisphenol S results in increased expression of HIGD2A mRNA CTD PMID:39298647 Higd2a Rat aflatoxin B1 increases methylation ISO HIGD2A (Homo sapiens) 6480464 Aflatoxin B1 results in increased methylation of HIGD2A gene CTD PMID:27153756 Higd2a Rat amphetamine increases expression EXP 6480464 Amphetamine results in increased expression of HIGD2A mRNA CTD PMID:30779732 Higd2a Rat arsenite(3-) multiple interactions ISO HIGD2A (Homo sapiens) 6480464 arsenite promotes the reaction [G3BP1 protein binds to HIGD2A mRNA] CTD PMID:32406909 Higd2a Rat benzo[b]fluoranthene increases expression ISO Higd2a (Mus musculus) 6480464 benzo(b)fluoranthene results in increased expression of HIGD2A mRNA CTD PMID:26377693 Higd2a Rat bis(2-ethylhexyl) phthalate multiple interactions EXP 6480464 [bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of HIGD2A promoter CTD PMID:23359474 Higd2a Rat bis(2-ethylhexyl) phthalate increases expression ISO Higd2a (Mus musculus) 6480464 Diethylhexyl Phthalate results in increased expression of HIGD2A mRNA CTD PMID:33754040 Higd2a Rat bisphenol A multiple interactions EXP 6480464 [bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of HIGD2A promoter CTD PMID:23359474 Higd2a Rat bisphenol A decreases expression ISO Higd2a (Mus musculus) 6480464 bisphenol A results in decreased expression of HIGD2A mRNA CTD PMID:35598803 Higd2a Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of HIGD2A mRNA CTD PMID:30816183 more ... Higd2a Rat bisphenol A affects expression EXP 6480464 bisphenol A affects the expression of HIGD2A mRNA CTD PMID:25181051 Higd2a Rat buspirone increases expression EXP 6480464 Buspirone results in increased expression of HIGD2A mRNA CTD PMID:24136188 Higd2a Rat chloropicrin increases expression ISO HIGD2A (Homo sapiens) 6480464 chloropicrin results in increased expression of HIGD2A mRNA CTD PMID:26352163 Higd2a Rat chlorpyrifos increases expression ISO Higd2a (Mus musculus) 6480464 Chlorpyrifos results in increased expression of HIGD2A mRNA CTD PMID:37019170 Higd2a Rat clofibric acid multiple interactions EXP 6480464 [Diethylnitrosamine co-treated with Clofibric Acid] affects the expression of HIGD2A mRNA CTD PMID:17602206 Higd2a Rat cobalt dichloride decreases expression EXP 6480464 cobaltous chloride results in decreased expression of HIGD2A mRNA CTD PMID:24386269 Higd2a Rat cobalt dichloride decreases expression ISO HIGD2A (Homo sapiens) 6480464 cobaltous chloride results in decreased expression of HIGD2A mRNA CTD PMID:19376846 Higd2a Rat dibutyl phthalate multiple interactions EXP 6480464 [bisphenol A co-treated with Diethylhexyl Phthalate co-treated with Dibutyl Phthalate] affects the methylation of HIGD2A promoter CTD PMID:23359474 Higd2a Rat dibutyl phthalate decreases expression ISO Higd2a (Mus musculus) 6480464 Dibutyl Phthalate results in decreased expression of HIGD2A mRNA CTD PMID:21266533 Higd2a Rat dimethylarsinic acid decreases expression ISO Higd2a (Mus musculus) 6480464 Cacodylic Acid results in decreased expression of HIGD2A mRNA CTD PMID:32052077 Higd2a Rat doxorubicin increases expression ISO HIGD2A (Homo sapiens) 6480464 Doxorubicin results in increased expression of HIGD2A mRNA CTD PMID:29803840 Higd2a Rat ethanol affects expression ISO Higd2a (Mus musculus) 6480464 Ethanol affects the expression of HIGD2A mRNA CTD PMID:30319688 Higd2a Rat folic acid multiple interactions ISO Higd2a (Mus musculus) 6480464 [1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of HIGD2A mRNA CTD PMID:22206623 Higd2a Rat hydralazine multiple interactions ISO HIGD2A (Homo sapiens) 6480464 [Hydralazine co-treated with Valproic Acid] results in increased expression of HIGD2A mRNA CTD PMID:17183730 Higd2a Rat leflunomide increases expression EXP 6480464 leflunomide results in increased expression of HIGD2A mRNA CTD PMID:24136188 Higd2a Rat lipopolysaccharide multiple interactions ISO Higd2a (Mus musculus) 6480464 [Tetrachlorodibenzodioxin co-treated with Lipopolysaccharides] results in decreased methylation of HIGD2A gene CTD PMID:21212295 Higd2a Rat N-nitrosodiethylamine multiple interactions EXP 6480464 [Diethylnitrosamine co-treated with Clofibric Acid] affects the expression of HIGD2A mRNA CTD PMID:17602206 Higd2a Rat nimesulide increases expression EXP 6480464 nimesulide results in increased expression of HIGD2A mRNA CTD PMID:24136188 Higd2a Rat phenobarbital decreases methylation ISO Higd2a (Mus musculus) 6480464 Phenobarbital results in decreased methylation of HIGD2A gene CTD PMID:19233941 Higd2a Rat rac-lactic acid affects expression ISO HIGD2A (Homo sapiens) 6480464 Lactic Acid affects the expression of HIGD2A mRNA CTD PMID:30851411 Higd2a Rat rotenone increases expression EXP 6480464 Rotenone results in increased expression of HIGD2A mRNA CTD PMID:28374803 Higd2a Rat sodium arsenite decreases expression ISO HIGD2A (Homo sapiens) 6480464 sodium arsenite results in decreased expression of HIGD2A mRNA CTD PMID:38568856 Higd2a Rat tetrachloromethane affects expression ISO Higd2a (Mus musculus) 6480464 Carbon Tetrachloride affects the expression of HIGD2A mRNA CTD PMID:17484886 Higd2a Rat triphenyl phosphate affects expression ISO HIGD2A (Homo sapiens) 6480464 triphenyl phosphate affects the expression of HIGD2A mRNA CTD PMID:37042841 Higd2a Rat valproic acid multiple interactions ISO HIGD2A (Homo sapiens) 6480464 [Hydralazine co-treated with Valproic Acid] results in increased expression of HIGD2A mRNA CTD PMID:17183730 Higd2a Rat valproic acid affects expression ISO HIGD2A (Homo sapiens) 6480464 Valproic Acid affects the expression of HIGD2A mRNA CTD PMID:25979313 Higd2a Rat valproic acid decreases expression ISO HIGD2A (Homo sapiens) 6480464 Valproic Acid results in decreased expression of HIGD2A mRNA CTD PMID:29154799 Higd2a Rat vitamin E increases expression ISO HIGD2A (Homo sapiens) 6480464 Vitamin E results in increased expression of HIGD2A mRNA CTD PMID:19244175
1,2-dimethylhydrazine (ISO) 17beta-estradiol (ISO) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2-hydroxypropanoic acid (ISO) 4,4'-sulfonyldiphenol (ISO) aflatoxin B1 (ISO) amphetamine (EXP) arsenite(3-) (ISO) benzo[b]fluoranthene (ISO) bis(2-ethylhexyl) phthalate (EXP,ISO) bisphenol A (EXP,ISO) buspirone (EXP) chloropicrin (ISO) chlorpyrifos (ISO) clofibric acid (EXP) cobalt dichloride (EXP,ISO) dibutyl phthalate (EXP,ISO) dimethylarsinic acid (ISO) doxorubicin (ISO) ethanol (ISO) folic acid (ISO) hydralazine (ISO) leflunomide (EXP) lipopolysaccharide (ISO) N-nitrosodiethylamine (EXP) nimesulide (EXP) phenobarbital (ISO) rac-lactic acid (ISO) rotenone (EXP) sodium arsenite (ISO) tetrachloromethane (ISO) triphenyl phosphate (ISO) valproic acid (ISO) vitamin E (ISO)
Higd2a (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 10,026,961 - 10,027,885 (-) NCBI GRCr8 mRatBN7.2 17 10,021,853 - 10,022,777 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 10,021,859 - 10,022,796 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 10,036,141 - 10,037,065 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 11,569,506 - 11,570,430 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 10,032,578 - 10,033,502 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 10,558,714 - 10,559,638 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 10,558,714 - 10,559,627 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 12,684,712 - 12,685,636 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 17 16,083,853 - 16,084,777 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 12 1,366,268 - 1,367,095 (+) NCBI Celera 17 10,094,818 - 10,095,742 (-) NCBI Celera Cytogenetic Map 17 p14 NCBI
HIGD2A (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 5 176,388,751 - 176,389,761 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 5 176,388,751 - 176,389,761 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 5 175,815,752 - 175,816,762 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 5 175,748,390 - 175,749,357 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 5 172,685,350 - 172,686,317 (-) NCBI Celera Cytogenetic Map 5 q35.2 NCBI HuRef 5 170,740,347 - 170,741,314 (+) NCBI HuRef CHM1_1 5 175,248,732 - 175,249,699 (+) NCBI CHM1_1 T2T-CHM13v2.0 5 176,933,109 - 176,934,119 (+) NCBI T2T-CHM13v2.0
Higd2a (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 13 54,738,044 - 54,738,960 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 13 54,738,020 - 54,738,971 (+) Ensembl GRCm39 Ensembl GRCm38 13 54,590,231 - 54,591,147 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 13 54,590,207 - 54,591,158 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 13 54,691,592 - 54,692,508 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 13 54,599,853 - 54,600,769 (+) NCBI MGSCv36 mm8 Celera 13 55,656,607 - 55,657,523 (+) NCBI Celera Cytogenetic Map 13 B1 NCBI cM Map 13 28.84 NCBI
Higd2a (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955408 28,689,781 - 28,690,762 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955408 28,689,781 - 28,690,762 (+) NCBI ChiLan1.0 ChiLan1.0
HIGD2A (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 4 171,467,897 - 171,468,839 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 5 169,607,436 - 169,608,382 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 5 171,685,512 - 171,686,527 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 5 178,757,440 - 178,758,686 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 5 178,757,667 - 178,758,676 (+) Ensembl panpan1.1 panPan2
HIGD2A (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 4 36,937,441 - 36,938,436 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 4 36,904,973 - 36,905,973 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 4 37,305,086 - 37,306,087 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 4 37,304,239 - 37,306,035 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 4 37,130,372 - 37,131,372 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 4 37,317,956 - 37,318,957 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 4 37,826,978 - 37,827,978 (-) NCBI UU_Cfam_GSD_1.0
Higd2a (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
HIGD2A (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 2 81,486,890 - 81,488,045 (-) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 2 81,486,890 - 81,488,039 (-) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 2 83,138,547 - 83,139,696 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
HIGD2A (Chlorocebus sabaeus - green monkey)
Higd2a (Heterocephalus glaber - naked mole-rat)
.
Predicted Target Of
Count of predictions: 42 Count of miRNA genes: 38 Interacting mature miRNAs: 41 Transcripts: ENSRNOT00000023515 Prediction methods: Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1354581 Bp247 Blood pressure QTL 247 4.5 arterial blood pressure trait (VT:2000000) pulse pressure (CMO:0000292) 17 1 69599340 Rat 2300002 Iddm36 Insulin dependent diabetes mellitus QTL 36 1.98 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 17 9991286 40540197 Rat 631499 Stl1 Serum triglyceride level QTL 1 3.6 blood triglyceride amount (VT:0002644) blood triglyceride level (CMO:0000118) 17 3271398 27389946 Rat 2293664 Bmd28 Bone mineral density QTL 28 5.1 0.0001 femur mineral mass (VT:0010011) trabecular volumetric bone mineral density (CMO:0001729) 17 4354487 27028127 Rat 1300123 Bp194 Blood pressure QTL 194 2.82 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 2115149 34551001 Rat 1582224 Epfw4 Epididymal fat weight QTL 4 3.5 0.0058 epididymal fat pad mass (VT:0010421) epididymal fat pad weight to body weight ratio (CMO:0000658) 17 9201365 23653323 Rat 1582225 Bw67 Body weight QTL 67 6.2 0.0001 body mass (VT:0001259) body weight (CMO:0000012) 17 9201365 23653323 Rat 1582226 Bw64 Body weight QTL 64 4.2 0.0017 body mass (VT:0001259) body weight (CMO:0000012) 17 9201365 23653323 Rat 1354651 Lmblg2 Limb length QTL 2 6 tibia length (VT:0004357) tibia length (CMO:0000450) 17 4299130 69599340 Rat 10401807 Kidm52 Kidney mass QTL 52 kidney mass (VT:0002707) both kidneys wet weight (CMO:0000085) 17 1 31701463 Rat 10054088 Scort28 Serum corticosterone level QTL 28 2.04 0.0102 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 17 4528038 49528038 Rat 1354630 Cm34 Cardiac mass QTL 34 8.7 heart left ventricle mass (VT:0007031) heart left ventricle wet weight (CMO:0000071) 17 4299130 69599340 Rat 1582208 Kidm32 Kidney mass QTL 32 3.9 0.0018 kidney mass (VT:0002707) both kidneys wet weight (CMO:0000085) 17 9201365 23653323 Rat 1354638 Insul1 Insulin level QTL 1 4.8 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 17 4299130 69599340 Rat 1354613 Kidm14 Kidney mass QTL 14 6.2 kidney mass (VT:0002707) left kidney wet weight (CMO:0000083) 17 4299130 35837242 Rat 2324619 Coatc4 Coat color QTL 4 0.001 coat/hair pigmentation trait (VT:0010463) pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811) 17 4299130 21293263 Rat 2303627 Vencon8 Ventilatory control QTL 8 0.001 respiration trait (VT:0001943) tidal volume (CMO:0000222) 17 4528038 49528038 Rat 70184 BpQTLcluster14 Blood pressure QTL cluster 14 3.38 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 17 1 31990913 Rat 1581553 Pur14 Proteinuria QTL 14 5.3 0.0001 urine total protein amount (VT:0000032) urine protein excretion rate (CMO:0000759) 17 7979968 16317111 Rat 2303561 Bw91 Body weight QTL 91 2 body mass (VT:0001259) body weight (CMO:0000012) 17 8868462 53868462 Rat 1582258 Bw76 Body weight QTL 76 4.6 0.0005 body mass (VT:0001259) body weight (CMO:0000012) 17 9201365 23653323 Rat 631207 Niddm41 Non-insulin dependent diabetes mellitus QTL 41 blood glucose amount (VT:0000188) plasma glucose level (CMO:0000042) 17 1 37830672 Rat 1582199 Insul5 Insulin level QTL 5 3.4 0.0119 blood insulin amount (VT:0001560) calculated serum insulin level (CMO:0000359) 17 9201365 23653323 Rat 1354596 Bw32 Body weight QTL 32 4.5 body mass (VT:0001259) body weight (CMO:0000012) 17 4299130 60781592 Rat 1354662 Rf49 Renal function QTL 49 2.9 blood creatinine amount (VT:0005328) plasma creatinine level (CMO:0000537) 17 1 69599340 Rat 2293648 Bmd31 Bone mineral density QTL 31 4.5 0.0001 femur size trait (VT:1000369) femoral neck cortical cross-sectional area (CMO:0001702) 17 4354487 27028127 Rat 1354658 Spl8 Serum phospholipid level QTL 8 3.8 blood VLDL phospholipid amount (VT:0010507) blood very low density lipoprotein phospholipid level (CMO:0001571) 17 1 60781592 Rat 1641902 Colcr7 Colorectal carcinoma resistance QTL 7 3.35 0.0044 intestine integrity trait (VT:0010554) benign colorectal tumor surface area measurement (CMO:0001799) 17 2115149 21881669 Rat 1582241 Bw70 Body weight QTL 70 4.6 0.0003 body mass (VT:0001259) body weight (CMO:0000012) 17 9201365 23653323 Rat 1582245 Bw73 Body weight QTL 73 4.6 0.0004 body mass (VT:0001259) body weight (CMO:0000012) 17 9201365 23653323 Rat 9590316 Scort21 Serum corticosterone level QTL 21 4.75 0.001 blood corticosterone amount (VT:0005345) plasma corticosterone level (CMO:0001173) 17 1 22871563 Rat
RH133064
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 12 2,777,024 - 2,777,234 (-) MAPPER mRatBN7.2 mRatBN7.2 17 10,021,906 - 10,022,116 (+) MAPPER mRatBN7.2 Rnor_6.0 17 10,558,768 - 10,558,977 NCBI Rnor6.0 Rnor_6.0 12 4,546,604 - 4,546,813 NCBI Rnor6.0 Rnor_5.0 17 12,684,766 - 12,684,975 UniSTS Rnor5.0 Rnor_5.0 12 6,674,667 - 6,674,876 UniSTS Rnor5.0 RGSC_v3.4 17 16,083,907 - 16,084,116 UniSTS RGSC3.4 RGSC_v3.4 12 1,366,613 - 1,366,822 UniSTS RGSC3.4 Celera 12 4,592,000 - 4,592,209 UniSTS Celera 17 10,094,872 - 10,095,081 UniSTS Cytogenetic Map 12 p12 UniSTS Cytogenetic Map 17 p14 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
49
113
91
90
59
25
59
6
218
97
93
45
60
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000023515 ⟹ ENSRNOP00000023515
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 17 10,021,859 - 10,022,796 (-) Ensembl Rnor_6.0 Ensembl 17 10,558,714 - 10,559,627 (-) Ensembl
RefSeq Acc Id:
NM_001106102 ⟹ NP_001099572
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 17 10,026,961 - 10,027,885 (-) NCBI mRatBN7.2 17 10,021,853 - 10,022,777 (-) NCBI Rnor_6.0 17 10,558,714 - 10,559,638 (-) NCBI Rnor_5.0 17 12,684,712 - 12,685,636 (-) NCBI RGSC_v3.4 17 16,083,853 - 16,084,777 (-) RGD Celera 17 10,094,818 - 10,095,742 (-) RGD
Sequence:
CGGATTTTTGTCCTACCTTGTTTTGTGCGGGTCGGTATGGCGGCTCCCGGTCCTGTGAGTCCAGAGGCGCCTTTTGATCCGTCCAAGGCCCCAGTTATCGAGGGCTTCAGCCCCACGGTCTACACCAA TCCAGAGGGCTTCAAGGAAAAGTTTATTCGCAAGACCCGTGAGAACCCAATGGTGCCTATAGGCTGTCTGGGTACGGCGGCTGCACTCACCTATGGCCTTTACTGCTTCCACCGCGGCCAGAGCCACC GATCCCAACTAATGATGCGCACCCGGATCGCTGCCCAGGGTTTCACGGTCGTAGCCATCTTGTTGGGGTTAGCGGCATCCACTATGAAGTCTCGATCCTGAGTGTATGGCTGGGTCTTGAAAGCTCCA TGGAAATCATTACAAAACCCAGGAGTAACAAACAGCCCTGTCAGACTTGCTGCCTCCGTTTCTGACAGGACCTTATTGTCGTTTGGGTGAGGAAGTGGCTGGTTTTGTGACTGATTTGCGCCTCCACC CCCGCCCCTCGAAATCCCAGATCCGTTTCTGTTGGGTTGCATGCTTCTATTTTGTGATGCGTCCCCTTAATTACTTAATAAAACCTTATTACACTTGTATGTGAT
hide sequence
RefSeq Acc Id:
NP_001099572 ⟸ NM_001106102
- UniProtKB:
B2GV65 (UniProtKB/TrEMBL), F7FGX2 (UniProtKB/TrEMBL)
- Sequence:
MAAPGPVSPEAPFDPSKAPVIEGFSPTVYTNPEGFKEKFIRKTRENPMVPIGCLGTAAALTYGLYCFHRGQSHRSQLMMRTRIAAQGFTVVAILLGLAASTMKSRS
hide sequence
Ensembl Acc Id:
ENSRNOP00000023515 ⟸ ENSRNOT00000023515
RGD ID: 13700323
Promoter ID: EPDNEW_R10845
Type: multiple initiation site
Name: Higd2a_1
Description: HIG1 hypoxia inducible domain family, member 2A
SO ACC ID: SO:0000170
Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.
Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 17 10,559,622 - 10,559,682 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2009-05-18
Higd2a
HIG1 hypoxia inducible domain family, member 2A
Higd2a
HIG1 domain family, member 2A
Nomenclature updated to reflect human and mouse nomenclature
1299863
APPROVED
2008-04-30
Higd2a
HIG1 domain family, member 2A
Higd2a_predicted
HIG1 domain family, member 2A (predicted)
'predicted' is removed
2292626
APPROVED
2006-03-30
Higd2a_predicted
HIG1 domain family, member 2A (predicted)
RGD1309691_predicted
similar to RIKEN cDNA 2010110M21 (predicted)
Symbol and Name updated
1299863
APPROVED
2005-01-20
RGD1309691_predicted
similar to RIKEN cDNA 2010110M21 (predicted)
LOC290999_predicted
Symbol and Name status set to approved
1331353
APPROVED
2005-01-12
LOC290999_predicted
similar to RIKEN cDNA 2010110M21 (predicted)
Symbol and Name status set to provisional
70820
PROVISIONAL