Blk (BLK proto-oncogene, Src family tyrosine kinase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Blk (BLK proto-oncogene, Src family tyrosine kinase) Rattus norvegicus
Analyze
Symbol: Blk
Name: BLK proto-oncogene, Src family tyrosine kinase
RGD ID: 1308859
Description: Predicted to enable non-membrane spanning protein tyrosine kinase activity and signaling receptor binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; peptidyl-tyrosine phosphorylation; and positive regulation of insulin secretion. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in maturity-onset diabetes of the young type 11 and systemic lupus erythematosus. Orthologous to human BLK (BLK proto-oncogene, Src family tyrosine kinase); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; INTERACTS WITH aflatoxin B1; alpha-Zearalanol; decabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: B lymphoid kinase; B lymphoid tyrosine kinase; LOC364403; MGC112647; tyrosine-protein kinase Blk
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,802,701 - 41,841,004 (-)NCBIGRCr8
mRatBN7.21537,626,746 - 37,665,053 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,627,039 - 37,665,031 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,479,764 - 39,517,808 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,630,559 - 40,668,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,087,624 - 39,125,646 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,555,552 - 46,593,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,555,188 - 46,593,653 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,317,854 - 50,355,753 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,643,847 - 42,682,793 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11542,659,818 - 42,698,493 (-)NCBI
Celera1537,310,648 - 37,348,449 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRatMyocardial Reperfusion Injury  IEP 1642307mRNA:increased expression:left ventricle (rat)RGD 
BlkRatsystemic lupus erythematosus  ISOBLK (Homo sapiens)2316189DNA:snp:promoter:rs13277113 (human)RGD 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRatAtrioventricular Septal Defect 4  ISOBLK (Homo sapiens)8554872ClinVar Annotator: match by term: Atrioventricular septal defect 4ClinVarPMID:19353638 more ...
BlkRatdiabetes mellitus  ISOBLK (Homo sapiens)8554872ClinVar Annotator: match by term: Monogenic diabetesClinVarPMID:18204098 more ...
BlkRatmaturity-onset diabetes of the young  ISOBLK (Homo sapiens)8554872ClinVar Annotator: match by term: Maturity onset diabetes mellitus in youngClinVar 
BlkRatmaturity-onset diabetes of the young  ISOBLK (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868
BlkRatmaturity-onset diabetes of the young type 11  ISOBLK (Homo sapiens)8554872ClinVar more ...ClinVarPMID:18204098 more ...
BlkRatNeurodevelopmental Disorders  ISOBLK (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
BlkRatsystemic lupus erythematosus  ISOBLK (Homo sapiens)8554872ClinVar Annotator: match by term: Systemic lupus erythematosusClinVarPMID:18204098 more ...
BlkRatthoracic aortic aneurysm  ISOBLK (Homo sapiens)8554872ClinVar Annotator: match by term: Thoracic aortic aneurysmClinVarPMID:32748548
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRatKawasaki disease  ISOBLK (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:22446961
BlkRatrheumatoid arthritis  ISOBLK (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20453842 and PMID:23143596
BlkRatsystemic lupus erythematosus  ISOBLK (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19838193
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRatmaturity-onset diabetes of the young type 11  ISOBLK (Homo sapiens)7240710 OMIM 

1 to 20 of 56 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOBlk (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of BLK mRNACTDPMID:20819909
BlkRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOBlk (Mus musculus)6480464Tetrachlorodibenzodioxin promotes the reaction [AHR protein binds to BLK gene]CTDPMID:20819909
BlkRatafimoxifene decreases response to substanceISOBLK (Homo sapiens)6480464BLK results in decreased susceptibility to afimoxifeneCTDPMID:21233418
BlkRataflatoxin B1 increases methylationISOBLK (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of BLK geneCTDPMID:27153756
BlkRataflatoxin B1 decreases expressionEXP 6480464Aflatoxin B1 results in decreased expression of BLK mRNACTDPMID:33354967
BlkRatall-trans-retinoic acid decreases expressionISOBlk (Mus musculus)6480464Tretinoin results in decreased expression of BLK mRNACTDPMID:36189433
BlkRatall-trans-retinoic acid multiple interactionsISOBlk (Mus musculus)6480464[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of BLK mRNACTDPMID:36189433
BlkRatalpha-Zearalanol increases expressionEXP 6480464Zeranol results in increased expression of BLK mRNACTDPMID:35163327
BlkRatarsane multiple interactionsISOBLK (Homo sapiens)6480464[Arsenic co-treated with Fluorides] results in decreased expression of BLK mRNACTDPMID:19962721
BlkRatarsenic atom multiple interactionsISOBLK (Homo sapiens)6480464[Arsenic co-treated with Fluorides] results in decreased expression of BLK mRNACTDPMID:19962721
BlkRatbenzo[a]pyrene decreases expressionISOBlk (Mus musculus)6480464Benzo(a)pyrene results in decreased expression of BLK mRNACTDPMID:21569818
BlkRatbenzo[a]pyrene increases methylationISOBLK (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of BLK 5' UTR and Benzo(a)pyrene results in increased methylation of BLK promoterCTDPMID:27901495
BlkRatbenzo[e]pyrene decreases methylationISOBLK (Homo sapiens)6480464benzo(e)pyrene results in decreased methylation of BLK exonCTDPMID:30157460
BlkRatbisphenol A increases expressionISOBlk (Mus musculus)6480464bisphenol A results in increased expression of BLK mRNACTDPMID:32156529 and PMID:38701888
BlkRatbortezomib decreases expressionISOBLK (Homo sapiens)6480464Bortezomib results in decreased expression of BLK mRNACTDPMID:20977926
BlkRatbuta-1,3-diene decreases expressionISOBlk (Mus musculus)64804641 and 3-butadiene results in decreased expression of BLK mRNACTDPMID:29038090
BlkRatcarmustine decreases expressionISOBLK (Homo sapiens)6480464Carmustine results in decreased expression of BLK mRNACTDPMID:15980968
BlkRatCGP 52608 multiple interactionsISOBLK (Homo sapiens)6480464CGP 52608 promotes the reaction [RORA protein binds to BLK gene]CTDPMID:28238834
BlkRatchloroprene decreases expressionISOBlk (Mus musculus)6480464Chloroprene results in decreased expression of BLK mRNACTDPMID:23125180
BlkRatdecabromodiphenyl ether increases expressionEXP 6480464decabromobiphenyl ether results in increased expression of BLK mRNACTDPMID:23640034

1 to 20 of 56 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRatB cell receptor signaling pathway involved_inISOBLK (Homo sapiens)1624291UniProtKB:Q8NDB2 more ...RGDPMID:23555801 and PMID:876631
BlkRatB cell receptor signaling pathway involved_inIEAUniProtKB:P51451 and ensembl:ENSP000002590891600115GO_REF:0000107EnsemblGO_REF:0000107
BlkRatbiological_process  ND 159840701/2010: no relevant rat dataRGD 
BlkRatcell differentiation involved_inIBAFB:FBgn0262733 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
BlkRatcell surface receptor protein tyrosine kinase signaling pathway involved_inIBAPANTHER:PTN002521528 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
BlkRatpeptidyl-tyrosine phosphorylation involved_inISOBLK (Homo sapiens)1624291 PMID:30356214RGDPMID:30356214
BlkRatpositive regulation of insulin secretion involved_inISOBLK (Homo sapiens)1624291 PMID:19667185RGDPMID:19667185
BlkRatpositive regulation of insulin secretion involved_inIEAUniProtKB:P51451 and ensembl:ENSP000002590891600115GO_REF:0000107EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRatplasma membrane is_active_inIBAFB:FBgn0000017 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
BlkRatATP binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
BlkRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
BlkRatATP binding enablesIEAInterPro:IPR000719 and InterPro:IPR0174411600115GO_REF:0000002InterProGO_REF:0000002
BlkRatkinase activity enablesIEAUniProtKB-KW:KW-04181600115GO_REF:0000043UniProtGO_REF:0000043
BlkRatnon-membrane spanning protein tyrosine kinase activity enablesISOBLK (Homo sapiens)1624291 PMID:23555801 and PMID:876631RGDPMID:23555801 and PMID:876631
BlkRatnon-membrane spanning protein tyrosine kinase activity enablesIEAEC:2.7.10.21600115GO_REF:0000003UniProtGO_REF:0000003
BlkRatnon-membrane spanning protein tyrosine kinase activity enablesIBAFB:FBgn0262733 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
BlkRatnon-membrane spanning protein tyrosine kinase activity enablesIEAUniProtKB:P51451 and ensembl:ENSP000002590891600115GO_REF:0000107EnsemblGO_REF:0000107
BlkRatnucleotide binding enablesIEAUniRule:UR0015033411600115GO_REF:0000104UniProtGO_REF:0000104
BlkRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
BlkRatprotein binding enablesISOBLK (Homo sapiens)1624291UniProtKB:A0A0C4DGF1 more ...RGDPMID:16273093 more ...
BlkRatprotein binding enablesISOBlk (Mus musculus)1624291PR:Q62018 PMID:8636124RGDPMID:8636124
BlkRatprotein kinase activity enablesIEAInterPro:IPR000719 and InterPro:IPR0012451600115GO_REF:0000002InterProGO_REF:0000002
BlkRatprotein tyrosine kinase activity enablesISOBLK (Homo sapiens)1624291 PMID:30356214RGDPMID:30356214
BlkRatprotein tyrosine kinase activity enablesIEAInterPro:IPR0206351600115GO_REF:0000002InterProGO_REF:0000002
BlkRatprotein tyrosine kinase activity enablesIEAUniProtKB-KW:KW-08291600115GO_REF:0000043UniProtGO_REF:0000043
BlkRatprotein tyrosine kinase activity enablesIEAUniProtKB:P51451 and ensembl:ENSP000002590891600115GO_REF:0000107EnsemblGO_REF:0000107
BlkRatsignaling receptor binding enablesIBAFB:FBgn0262733 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
BlkRattransferase activity enablesIEAUniProtKB-KW:KW-08081600115GO_REF:0000043UniProtGO_REF:0000043
1 to 19 of 19 rows

Imported Annotations - PID (archival)


1 to 11 of 11 rows
#
Reference Title
Reference Citation
1. The effect of cardiac ischemic preconditioning on rat left ventricular gene expression profile. Canatan H Cell Biochem Funct. 2007 Jun 11;.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Replication of the association between the C8orf13-BLK region and systemic lupus erythematosus in a Japanese population. Ito I, etal., Arthritis Rheum. 2009 Feb;60(2):553-8.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
1 to 11 of 11 rows
PMID:876631   PMID:12477932   PMID:19667185   PMID:30356214  



Blk
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81541,802,701 - 41,841,004 (-)NCBIGRCr8
mRatBN7.21537,626,746 - 37,665,053 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1537,627,039 - 37,665,031 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1539,479,764 - 39,517,808 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01540,630,559 - 40,668,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01539,087,624 - 39,125,646 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01546,555,552 - 46,593,778 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1546,555,188 - 46,593,653 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01550,317,854 - 50,355,753 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41542,643,847 - 42,682,793 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11542,659,818 - 42,698,493 (-)NCBI
Celera1537,310,648 - 37,348,449 (-)NCBICelera
Cytogenetic Map15p12NCBI
BLK
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38811,494,387 - 11,564,599 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl811,486,894 - 11,564,599 (+)EnsemblGRCh38hg38GRCh38
GRCh37811,351,896 - 11,422,108 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36811,388,930 - 11,459,517 (+)NCBINCBI36Build 36hg18NCBI36
Build 34811,388,929 - 11,459,516NCBI
Celera810,480,897 - 10,551,454 (+)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef810,282,885 - 10,353,426 (+)NCBIHuRef
CHM1_1811,416,813 - 11,487,683 (+)NCBICHM1_1
T2T-CHM13v2.088,175,675 - 8,245,838 (-)NCBIT2T-CHM13v2.0
Blk
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391463,610,286 - 63,654,636 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1463,610,285 - 63,654,486 (-)EnsemblGRCm39 Ensembl
GRCm381463,372,837 - 63,417,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,372,836 - 63,417,037 (-)EnsemblGRCm38mm10GRCm38
MGSCv371463,991,674 - 64,036,024 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361462,326,947 - 62,371,297 (-)NCBIMGSCv36mm8
Celera1461,138,348 - 61,182,625 (-)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.25NCBI
Blk
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540352,832,604 - 52,874,264 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540352,825,397 - 52,874,007 (+)NCBIChiLan1.0ChiLan1.0
BLK
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2727,961,701 - 28,032,048 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan183,988,006 - 4,058,396 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v087,637,680 - 7,708,914 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
BLK
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12526,336,253 - 26,357,494 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2526,336,892 - 26,358,015 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2526,989,229 - 27,064,576 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02526,487,019 - 26,562,216 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2526,487,603 - 26,562,224 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12526,439,922 - 26,514,938 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02526,336,943 - 26,412,007 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02526,488,713 - 26,563,761 (-)NCBIUU_Cfam_GSD_1.0
Blk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,339,527 - 5,357,038 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366753,229,154 - 3,246,292 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366753,228,982 - 3,246,617 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BLK
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1414,688,943 - 14,745,947 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11414,688,489 - 14,745,946 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21415,895,128 - 15,934,019 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BLK
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.187,547,200 - 7,618,645 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl87,547,299 - 7,569,188 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605234,810,867 - 34,883,078 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Blk
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475825,129,853 - 25,181,761 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475825,129,922 - 25,180,180 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Blk
225 total Variants

Predicted Target Of
Summary Value
Count of predictions:274
Count of miRNA genes:180
Interacting mature miRNAs:199
Transcripts:ENSRNOT00000015021
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat

1 to 10 of 28 rows
D15Rat119  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81541,807,938 - 41,808,150 (+)Marker Load Pipeline
mRatBN7.21537,631,983 - 37,632,195 (+)MAPPERmRatBN7.2
Rnor_6.01546,560,523 - 46,560,734NCBIRnor6.0
Rnor_5.01550,322,825 - 50,323,036UniSTSRnor5.0
RGSC_v3.41542,649,228 - 42,649,440RGDRGSC3.4
RGSC_v3.41542,649,229 - 42,649,440UniSTSRGSC3.4
RGSC_v3.11542,664,928 - 42,665,140RGD
Celera1537,315,611 - 37,315,822UniSTS
SHRSP x BN Map1532.3898UniSTS
SHRSP x BN Map1532.3898RGD
Cytogenetic Map15p12UniSTS
RH131524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21537,626,771 - 37,626,965 (+)MAPPERmRatBN7.2
Rnor_6.01546,301,761 - 46,301,954NCBIRnor6.0
Rnor_5.01550,066,555 - 50,066,748UniSTSRnor5.0
RGSC_v3.41542,643,606 - 42,643,799UniSTSRGSC3.4
Celera1537,310,407 - 37,310,600UniSTS
RH 3.4 Map15285.2UniSTS
Cytogenetic Map15p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 45 76 87 86 55 25 55 6 194 91 56 31 54 31



Ensembl Acc Id: ENSRNOT00000015021   ⟹   ENSRNOP00000015021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1537,627,039 - 37,665,031 (-)Ensembl
Rnor_6.0 Ensembl1546,555,188 - 46,593,653 (-)Ensembl
RefSeq Acc Id: NM_001025751   ⟹   NP_001020922
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81541,802,968 - 41,840,982 (-)NCBI
mRatBN7.21537,627,013 - 37,665,031 (-)NCBI
Rnor_6.01546,555,552 - 46,593,570 (-)NCBI
Rnor_5.01550,317,854 - 50,355,753 (-)NCBI
RGSC_v3.41542,643,847 - 42,682,793 (-)RGD
Celera1537,310,648 - 37,348,449 (-)RGD
Sequence:
RefSeq Acc Id: XM_006252188   ⟹   XP_006252250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81541,802,701 - 41,841,004 (-)NCBI
mRatBN7.21537,626,746 - 37,665,053 (-)NCBI
Rnor_6.01546,555,552 - 46,593,778 (-)NCBI
Rnor_5.01550,317,854 - 50,355,753 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093550   ⟹   XP_038949478
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81541,802,701 - 41,813,892 (-)NCBI
mRatBN7.21537,626,746 - 37,637,948 (-)NCBI
Protein RefSeqs NP_001020922 (Get FASTA)   NCBI Sequence Viewer  
  XP_006252250 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949478 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98683 (Get FASTA)   NCBI Sequence Viewer  
  EDL85321 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000015021
  ENSRNOP00000015021.4
RefSeq Acc Id: NP_001020922   ⟸   NM_001025751
- UniProtKB: Q4KM97 (UniProtKB/TrEMBL),   F7EWL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252250   ⟸   XM_006252188
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000015021   ⟸   ENSRNOT00000015021
RefSeq Acc Id: XP_038949478   ⟸   XM_039093550
- Peptide Label: isoform X2
Protein kinase   SH2   SH3

Name Modeler Protein Id AA Range Protein Structure
AF-Q4KM97-F1-model_v2 AlphaFold Q4KM97 1-499 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 40 of 44 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-13429 BioCyc
Ensembl Genes ENSRNOG00000010798 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000015021 ENTREZGENE
  ENSRNOT00000015021.7 UniProtKB/TrEMBL
Gene3D-CATH 3.30.505.10 UniProtKB/TrEMBL
  Phosphorylase Kinase, domain 1 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7385175 IMAGE-MGC_LOAD
InterPro Kinase-like_dom UniProtKB/TrEMBL
  Non-receptor_tyrosine_kinases UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser-Thr/Tyr-Pkinase UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  Tyr_Pkinase_cat_dom UniProtKB/TrEMBL
KEGG Report rno:364403 UniProtKB/TrEMBL
MGC_CLONE MGC:112647 IMAGE-MGC_LOAD
NCBI Gene 364403 ENTREZGENE
PANTHER TYROSINE-PROTEIN KINASE UniProtKB/TrEMBL
Pfam Pkinase_Tyr UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PharmGKB BLK RGD
PhenoGen Blk PhenoGen
PRINTS SH2DOMAIN UniProtKB/TrEMBL
  SH3DOMAIN UniProtKB/TrEMBL
  TYRKINASE UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010798 RatGTEx
SMART SH2 UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  TyrKc UniProtKB/TrEMBL
Superfamily-SCOP Kinase_like UniProtKB/TrEMBL
1 to 40 of 44 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-09 Blk  BLK proto-oncogene, Src family tyrosine kinase  Blk  B lymphoid tyrosine kinase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-25 Blk  B lymphoid tyrosine kinase  Blk  B lymphoid kinase  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Blk  B lymphoid kinase  Blk_predicted  B lymphoid kinase (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Blk_predicted  B lymphoid kinase (predicted)      Symbol and Name status set to approved 70820 APPROVED