Kifc3 (kinesin family member C3) - Rat Genome Database
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Gene: Kifc3 (kinesin family member C3) Rattus norvegicus
Analyze
Symbol: Kifc3
Name: kinesin family member C3
RGD ID: 1307693
Description: Predicted to have identical protein binding activity. Predicted to be involved in several processes, including Golgi organization; epithelial cell-cell adhesion; and zonula adherens maintenance. Predicted to localize to Golgi apparatus; microtubule cytoskeleton; and zonula adherens. Orthologous to human KIFC3 (kinesin family member C3); PARTICIPATES IN E-cadherin signaling pathway; INTERACTS WITH 2,2',5,5'-tetrachlorobiphenyl; 2,3,7,8-Tetrachlorodibenzofuran; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: kinesin-like protein KIFC3; KRP4; LOC307644; MGC156699
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Rnor_6.0 Ensembl1910,320,604 - 10,339,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01910,305,405 - 10,339,186 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01910,226,739 - 10,319,289 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,335,789 - 10,354,364 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11910,325,554 - 10,359,187 (+)NCBI
Celera199,789,874 - 9,808,283 (+)NCBICelera
Cytogenetic Map19p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8688559   PMID:12135985   PMID:12477932   PMID:19041755   PMID:19056867  


Genomics

Comparative Map Data
Kifc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Rnor_6.0 Ensembl1910,320,604 - 10,339,178 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01910,305,405 - 10,339,186 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01910,226,739 - 10,319,289 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,335,789 - 10,354,364 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11910,325,554 - 10,359,187 (+)NCBI
Celera199,789,874 - 9,808,283 (+)NCBICelera
Cytogenetic Map19p13NCBI
KIFC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1657,758,217 - 57,863,053 (-)EnsemblGRCh38hg38GRCh38
GRCh381657,758,217 - 57,863,053 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371657,792,129 - 57,837,165 (-)NCBIGRCh37GRCh37hg19GRCh37
GRCh371657,792,129 - 57,896,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,349,630 - 56,393,940 (-)NCBINCBI36hg18NCBI36
Build 341656,349,631 - 56,393,909NCBI
Celera1642,289,388 - 42,333,720 (-)NCBI
Cytogenetic Map16q21NCBI
HuRef1643,659,003 - 43,703,719 (-)NCBIHuRef
CHM1_11659,198,854 - 59,243,662 (-)NCBICHM1_1
Kifc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,826,456 - 95,929,454 (-)NCBIGRCm39mm39
GRCm38895,099,828 - 95,202,826 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,099,828 - 95,202,812 (-)EnsemblGRCm38mm10GRCm38
MGSCv37897,623,728 - 97,666,440 (-)NCBIGRCm37mm9NCBIm37
MGSCv36897,988,957 - 98,031,669 (-)NCBImm8
Celera899,425,882 - 99,457,735 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
Kifc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,366,106 - 15,428,660 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,365,944 - 15,428,502 (-)NCBIChiLan1.0ChiLan1.0
KIFC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11657,166,395 - 57,254,899 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,166,395 - 57,254,899 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01638,034,983 - 38,080,022 (-)NCBIMhudiblu_PPA_v0panPan3
KIFC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl258,663,797 - 58,733,697 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1258,700,195 - 58,734,012 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Kifc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364759,758,503 - 9,821,629 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIFC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,659,987 - 19,730,359 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,659,987 - 19,696,104 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,719,961 - 17,750,864 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIFC3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,689,079 - 43,735,014 (-)NCBI
ChlSab1.1 Ensembl543,687,613 - 43,730,268 (-)Ensembl
Kifc3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474628,302,673 - 28,359,649 (+)NCBI

Position Markers
AI325457  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01910,339,004 - 10,339,099NCBIRnor6.0
Rnor_5.01910,319,107 - 10,319,202UniSTSRnor5.0
RGSC_v3.41910,354,185 - 10,354,280UniSTSRGSC3.4
Celera199,808,104 - 9,808,199UniSTS
Cytogenetic Map19p13UniSTS
RH130442  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01910,338,900 - 10,339,102NCBIRnor6.0
Rnor_5.01910,319,003 - 10,319,205UniSTSRnor5.0
RGSC_v3.41910,354,081 - 10,354,283UniSTSRGSC3.4
Celera199,808,000 - 9,808,202UniSTS
RH 3.4 Map1972.41UniSTS
Cytogenetic Map19p13UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124933090Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127635288Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19129558305Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19129558305Rat
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19132379055Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19138221845Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19138221845Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19138221845Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19138221845Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19104464846044648Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19195770746957707Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19243296347217667Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19243296362275575Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)19370183548701835Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)19370183548701835Rat
724565Tcas5Tongue tumor susceptibility QTL 510.04tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)19500757143907843Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19650676160220581Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19807254547318201Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:66
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000066032
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 9 7 2 1 2 60 35 28 6
Low 3 34 50 39 18 39 8 11 14 13 5 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001103352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008772296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC106681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF035953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM180764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC128748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000066032   ⟹   ENSRNOP00000058969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1910,320,604 - 10,339,178 (+)Ensembl
RefSeq Acc Id: NM_001103352   ⟹   NP_001096822
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,901,787 - 9,920,371 (+)NCBI
Rnor_6.01910,320,604 - 10,339,183 (+)NCBI
Rnor_5.01910,226,739 - 10,319,289 (+)NCBI
RGSC_v3.41910,335,789 - 10,354,364 (+)RGD
Celera199,789,874 - 9,808,283 (+)RGD
Sequence:
RefSeq Acc Id: XM_008772288   ⟹   XP_008770510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,886,597 - 9,920,371 (+)NCBI
Rnor_6.01910,305,405 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772289   ⟹   XP_008770511
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01910,305,522 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772291   ⟹   XP_008770513
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01910,305,479 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772292   ⟹   XP_008770514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,901,658 - 9,920,371 (+)NCBI
Rnor_6.01910,320,541 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772293   ⟹   XP_008770515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,908,496 - 9,920,371 (+)NCBI
Rnor_6.01910,327,255 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772294   ⟹   XP_008770516
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,908,300 - 9,920,371 (+)NCBI
Rnor_6.01910,327,158 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772295   ⟹   XP_008770517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,886,598 - 9,920,371 (+)NCBI
Rnor_6.01910,305,410 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008772296   ⟹   XP_008770518
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,908,298 - 9,920,371 (+)NCBI
Rnor_6.01910,327,028 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601265   ⟹   XP_017456754
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Rnor_6.01910,309,817 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601266   ⟹   XP_017456755
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Rnor_6.01910,309,817 - 10,339,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601267   ⟹   XP_017456756
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Rnor_6.01910,309,817 - 10,339,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601268   ⟹   XP_017456757
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01910,309,817 - 10,337,803 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601269   ⟹   XP_017456758
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Rnor_6.01910,309,817 - 10,339,183 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601270   ⟹   XP_017456759
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Rnor_6.01910,309,817 - 10,339,186 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601271   ⟹   XP_017456760
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01910,305,479 - 10,338,325 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097698   ⟹   XP_038953626
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
RefSeq Acc Id: XM_039097699   ⟹   XP_038953627
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
RefSeq Acc Id: XM_039097700   ⟹   XP_038953628
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,891,414 - 9,920,371 (+)NCBI
RefSeq Acc Id: XM_039097701   ⟹   XP_038953629
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,891,254 - 9,920,371 (+)NCBI
RefSeq Acc Id: XM_039097702   ⟹   XP_038953630
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,891,066 - 9,920,371 (+)NCBI
RefSeq Acc Id: XR_005496646
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
RefSeq Acc Id: XR_005496647
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2199,825,208 - 9,920,371 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001096822   ⟸   NM_001103352
- UniProtKB: A1A5P4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008770510   ⟸   XM_008772288
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008770517   ⟸   XM_008772295
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_008770511   ⟸   XM_008772289
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008770513   ⟸   XM_008772291
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_008770514   ⟸   XM_008772292
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008770516   ⟸   XM_008772294
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008770518   ⟸   XM_008772296
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008770515   ⟸   XM_008772293
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017456760   ⟸   XM_017601271
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017456755   ⟸   XM_017601266
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456756   ⟸   XM_017601267
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017456759   ⟸   XM_017601270
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017456758   ⟸   XM_017601269
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017456754   ⟸   XM_017601265
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017456757   ⟸   XM_017601268
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSRNOP00000058969   ⟸   ENSRNOT00000066032
RefSeq Acc Id: XP_038953626   ⟸   XM_039097698
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038953627   ⟸   XM_039097699
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038953630   ⟸   XM_039097702
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038953629   ⟸   XM_039097701
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038953628   ⟸   XM_039097700
- Peptide Label: isoform X9
Protein Domains
Kinesin motor

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307693 AgrOrtholog
Ensembl Genes ENSRNOG00000014087 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000058969 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066032 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7099524 IMAGE-MGC_LOAD
InterPro KIFC3 UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:307644 UniProtKB/TrEMBL
MGC_CLONE MGC:156699 IMAGE-MGC_LOAD
NCBI Gene 307644 ENTREZGENE
PANTHER PTHR47972:SF5 UniProtKB/TrEMBL
Pfam Kinesin UniProtKB/TrEMBL
PhenoGen Kifc3 PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A1A5P4 ENTREZGENE, UniProtKB/TrEMBL
  Q2P9S2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Kifc3  kinesin family member C3  Kifc3_predicted  kinesin family member C3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Kifc3_predicted  kinesin family member C3 (predicted)      Symbol and Name status set to approved 70820 APPROVED