Enah (ENAH, actin regulator) - Rat Genome Database

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Gene: Enah (ENAH, actin regulator) Rattus norvegicus
Analyze
Symbol: Enah
Name: ENAH, actin regulator
RGD ID: 1307666
Description: Predicted to enable SH3 domain binding activity; WW domain binding activity; and profilin binding activity. Predicted to be involved in actin polymerization or depolymerization; actin polymerization-dependent cell motility; and axon guidance. Predicted to act upstream of or within actin cytoskeleton organization; cellular response to leukemia inhibitory factor; and neural tube closure. Predicted to be located in several cellular components, including focal adhesion; lamellipodium; and stress fiber. Orthologous to human ENAH (ENAH actin regulator); PARTICIPATES IN E-cadherin signaling pathway; INTERACTS WITH 17alpha-ethynylestradiol; 3,3',4,4',5-pentachlorobiphenyl; cadmium dichloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: enabled homolog; enabled homolog (Drosophila); LOC360891
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21393,617,751 - 93,738,119 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1393,626,944 - 93,740,955 (-)Ensembl
Rnor_6.013100,297,421 - 100,415,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,300,054 - 100,414,226 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,277,627 - 105,392,796 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41397,919,690 - 98,025,153 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11398,108,627 - 98,214,089 (-)NCBI
Celera1393,161,661 - 93,266,823 (-)NCBICelera
Cytogenetic Map13q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8861907   PMID:9126384   PMID:10069337   PMID:12477932   PMID:12672821   PMID:12967995   PMID:15148305   PMID:15371503   PMID:17686488   PMID:20439489   PMID:21423176   PMID:24186093  
PMID:26221026  


Genomics

Comparative Map Data
Enah
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21393,617,751 - 93,738,119 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1393,626,944 - 93,740,955 (-)Ensembl
Rnor_6.013100,297,421 - 100,415,335 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13100,300,054 - 100,414,226 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013105,277,627 - 105,392,796 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41397,919,690 - 98,025,153 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11398,108,627 - 98,214,089 (-)NCBI
Celera1393,161,661 - 93,266,823 (-)NCBICelera
Cytogenetic Map13q26NCBI
ENAH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1225,486,835 - 225,653,142 (-)EnsemblGRCh38hg38GRCh38
GRCh381225,486,829 - 225,660,046 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371225,674,531 - 225,840,825 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361223,741,157 - 223,907,468 (-)NCBINCBI36hg18NCBI36
Build 341221,981,268 - 222,147,580NCBI
Celera1198,865,129 - 199,031,134 (-)NCBI
Cytogenetic Map1q42.12NCBI
HuRef1196,193,432 - 196,359,068 (-)NCBIHuRef
CHM1_11226,946,878 - 227,113,178 (-)NCBICHM1_1
Enah
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391181,723,949 - 181,848,132 (-)NCBIGRCm39mm39
GRCm39 Ensembl1181,723,949 - 181,847,555 (-)Ensembl
GRCm381181,896,384 - 182,027,556 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1181,896,384 - 182,019,990 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,834,576 - 183,950,111 (-)NCBIGRCm37mm9NCBIm37
MGSCv361183,742,188 - 183,856,336 (-)NCBImm8
Celera1188,957,160 - 189,017,504 (-)NCBICelera
Cytogenetic Map1H5NCBI
cM Map184.93NCBI
Enah
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955520308,070 - 371,922 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955520310,482 - 374,800 (+)NCBIChiLan1.0ChiLan1.0
ENAH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11205,963,067 - 206,115,672 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1205,963,247 - 206,115,672 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01200,956,988 - 201,113,242 (-)NCBIMhudiblu_PPA_v0panPan3
ENAH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1739,105,024 - 39,250,126 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl739,105,039 - 39,247,595 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha738,587,078 - 38,732,144 (+)NCBI
ROS_Cfam_1.0738,938,972 - 39,084,406 (+)NCBI
UMICH_Zoey_3.1738,778,555 - 38,923,489 (+)NCBI
UNSW_CanFamBas_1.0738,786,801 - 38,932,026 (+)NCBI
UU_Cfam_GSD_1.0739,056,619 - 39,201,943 (+)NCBI
Enah
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934452,269,764 - 52,414,557 (+)NCBI
SpeTri2.0NW_0049365262,332,344 - 2,477,827 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ENAH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1013,446,426 - 13,609,303 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11013,439,772 - 13,609,347 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21016,217,878 - 16,292,117 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ENAH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1254,134,853 - 4,264,392 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl254,134,852 - 4,260,928 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660554,119,116 - 4,284,897 (+)NCBIVero_WHO_p1.0
Enah
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248356,292,808 - 6,442,349 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH134481  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21393,627,001 - 93,627,184 (+)MAPPERmRatBN7.2
Rnor_6.013100,300,112 - 100,300,294NCBIRnor6.0
Rnor_5.013105,280,318 - 105,280,500UniSTSRnor5.0
RGSC_v3.41397,919,760 - 97,919,942UniSTSRGSC3.4
Celera1393,161,731 - 93,161,913UniSTS
RH 3.4 Map13632.2UniSTS
Cytogenetic Map13q26UniSTS
BE112154  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21393,685,758 - 93,685,923 (+)MAPPERmRatBN7.2
Rnor_6.013100,358,853 - 100,359,017NCBIRnor6.0
Rnor_5.013105,339,147 - 105,339,311UniSTSRnor5.0
RGSC_v3.41397,978,672 - 97,978,836UniSTSRGSC3.4
Celera1393,220,263 - 93,220,427UniSTS
RH 3.4 Map13629.9UniSTS
Cytogenetic Map13q26UniSTS
BF410035  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21393,645,960 - 93,646,123 (+)MAPPERmRatBN7.2
Rnor_6.013100,319,074 - 100,319,236NCBIRnor6.0
Rnor_5.013105,299,084 - 105,299,246UniSTSRnor5.0
RGSC_v3.41397,938,932 - 97,939,094UniSTSRGSC3.4
Celera1393,180,652 - 93,180,814UniSTS
RH 3.4 Map13631.2UniSTS
Cytogenetic Map13q26UniSTS
BF405107  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21393,690,005 - 93,690,135 (+)MAPPERmRatBN7.2
Rnor_6.013100,363,100 - 100,363,229NCBIRnor6.0
Rnor_5.013105,343,394 - 105,343,523UniSTSRnor5.0
RGSC_v3.41397,982,919 - 97,983,048UniSTSRGSC3.4
Celera1393,224,510 - 93,224,639UniSTS
RH 3.4 Map13631.8UniSTS
Cytogenetic Map13q26UniSTS
AU047203  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21393,727,868 - 93,727,996 (+)MAPPERmRatBN7.2
Rnor_6.013100,400,877 - 100,401,004NCBIRnor6.0
Rnor_5.013105,381,171 - 105,381,298UniSTSRnor5.0
RGSC_v3.41398,020,691 - 98,020,818UniSTSRGSC3.4
Celera1393,262,361 - 93,262,488UniSTS
Cytogenetic Map13q26UniSTS
Enah  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21393,640,009 - 93,641,156 (+)MAPPERmRatBN7.2
Rnor_6.013100,313,117 - 100,314,263NCBIRnor6.0
Rnor_5.013105,293,000 - 105,294,146UniSTSRnor5.0
RGSC_v3.41397,933,114 - 97,934,260UniSTSRGSC3.4
Celera1393,174,705 - 93,175,851UniSTS
Cytogenetic Map13q26UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
1641901Alcrsp6Alcohol response QTL 6response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)135236217197362171Rat
1354655Bp241Blood pressure QTL 2413.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1356056920101056920Rat
12879475Bp400Blood pressure QTL 400arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1361825626106807694Rat
2293702Bss34Bone structure and strength QTL 344.610.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)1365103704106807694Rat
2293687Bss26Bone structure and strength QTL 264.60.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)1365103704106807694Rat
8655959Pur32Proteinuria QTL 328.4total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)137402391897213863Rat
2293341Glom15Glomerulus QTL 159.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1374862117101339893Rat
4889606Gluco63Glucose level QTL 632.860.003blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1380753256106807694Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:102
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000039974
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 21 6 9 6 8 9 74 32 41 11 8
Low 35 34 10 34 2 3
Below cutoff 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000039974   ⟹   ENSRNOP00000050866
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1393,626,944 - 93,732,335 (-)Ensembl
Rnor_6.0 Ensembl13100,300,054 - 100,405,339 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085188   ⟹   ENSRNOP00000073827
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1393,626,944 - 93,732,335 (-)Ensembl
Rnor_6.0 Ensembl13100,300,199 - 100,414,226 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097600   ⟹   ENSRNOP00000081404
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1393,626,944 - 93,740,955 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098544   ⟹   ENSRNOP00000081655
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1393,626,944 - 93,740,955 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109962   ⟹   ENSRNOP00000076584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1393,626,944 - 93,740,955 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114419   ⟹   ENSRNOP00000079564
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1393,626,944 - 93,681,785 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114860   ⟹   ENSRNOP00000097849
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1393,626,944 - 93,740,955 (-)Ensembl
RefSeq Acc Id: NM_001012150   ⟹   NP_001012150
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,626,932 - 93,732,335 (-)NCBI
Rnor_6.013100,300,042 - 100,405,339 (-)NCBI
Rnor_5.013105,277,627 - 105,392,796 (-)NCBI
RGSC_v3.41397,919,690 - 98,025,153 (-)RGD
Celera1393,161,661 - 93,266,823 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250393   ⟹   XP_006250455
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
Rnor_6.013100,297,421 - 100,414,121 (-)NCBI
Rnor_5.013105,277,627 - 105,392,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250400   ⟹   XP_006250462
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
Rnor_6.013100,297,421 - 100,414,121 (-)NCBI
Rnor_5.013105,277,627 - 105,392,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250401   ⟹   XP_006250463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
Rnor_6.013100,297,421 - 100,414,121 (-)NCBI
Rnor_5.013105,277,627 - 105,392,796 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090923   ⟹   XP_038946851
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
RefSeq Acc Id: XM_039090924   ⟹   XP_038946852
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
RefSeq Acc Id: XM_039090925   ⟹   XP_038946853
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,733,083 (-)NCBI
RefSeq Acc Id: XM_039090926   ⟹   XP_038946854
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,732,334 (-)NCBI
RefSeq Acc Id: XM_039090927   ⟹   XP_038946855
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,621,860 - 93,738,119 (-)NCBI
RefSeq Acc Id: XM_039090929   ⟹   XP_038946857
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,746 (-)NCBI
RefSeq Acc Id: XM_039090930   ⟹   XP_038946858
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
RefSeq Acc Id: XM_039090931   ⟹   XP_038946859
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
RefSeq Acc Id: XM_039090932   ⟹   XP_038946860
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,737,712 (-)NCBI
RefSeq Acc Id: XM_039090933   ⟹   XP_038946861
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21393,617,751 - 93,648,652 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001012150   ⟸   NM_001012150
- UniProtKB: Q5XHX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250463   ⟸   XM_006250401
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006250462   ⟸   XM_006250400
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_006250455   ⟸   XM_006250393
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000073827   ⟸   ENSRNOT00000085188
RefSeq Acc Id: ENSRNOP00000050866   ⟸   ENSRNOT00000039974
RefSeq Acc Id: XP_038946857   ⟸   XM_039090929
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038946860   ⟸   XM_039090932
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038946852   ⟸   XM_039090924
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038946859   ⟸   XM_039090931
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038946858   ⟸   XM_039090930
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038946851   ⟸   XM_039090923
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038946853   ⟸   XM_039090925
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038946854   ⟸   XM_039090926
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038946861   ⟸   XM_039090933
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038946855   ⟸   XM_039090927
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000079564   ⟸   ENSRNOT00000114419
RefSeq Acc Id: ENSRNOP00000081655   ⟸   ENSRNOT00000098544
RefSeq Acc Id: ENSRNOP00000076584   ⟸   ENSRNOT00000109962
RefSeq Acc Id: ENSRNOP00000097849   ⟸   ENSRNOT00000114860
RefSeq Acc Id: ENSRNOP00000081404   ⟸   ENSRNOT00000097600
Protein Domains
WH1

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699073
Promoter ID:EPDNEW_R9598
Type:initiation region
Name:Enah_1
Description:ENAH, actin regulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9599  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013100,405,407 - 100,405,467EPDNEW
RGD ID:13699090
Promoter ID:EPDNEW_R9599
Type:single initiation site
Name:Enah_2
Description:ENAH, actin regulator
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9598  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.013100,414,312 - 100,414,372EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
13 100316596 100316597 G A snv MNS/Gib (RGD)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307666 AgrOrtholog
Ensembl Genes ENSRNOG00000031934 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000050866 UniProtKB/TrEMBL
  ENSRNOP00000073827 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000039974 UniProtKB/TrEMBL
  ENSRNOT00000085188 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7135538 IMAGE-MGC_LOAD
InterPro EVH1 UniProtKB/TrEMBL
  PH_type UniProtKB/TrEMBL
  VASP_sf UniProtKB/TrEMBL
  VASP_tetra UniProtKB/TrEMBL
KEGG Report rno:360891 UniProtKB/TrEMBL
MGC_CLONE MGC:95334 IMAGE-MGC_LOAD
NCBI Gene 360891 ENTREZGENE
Pfam VASP_tetra UniProtKB/TrEMBL
  WH1 UniProtKB/TrEMBL
PhenoGen Enah PhenoGen
PROSITE WH1 UniProtKB/TrEMBL
SMART WH1 UniProtKB/TrEMBL
Superfamily-SCOP SSF118370 UniProtKB/TrEMBL
UniProt A0A0G2K6I4_RAT UniProtKB/TrEMBL
  Q5XHX3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-12 Enah  ENAH, actin regulator  Enah  enabled homolog (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Enah  enabled homolog (Drosophila)  Enah_predicted  enabled homolog (Drosophila) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Enah_predicted  enabled homolog (Drosophila) (predicted)      Symbol and Name status set to approved 70820 APPROVED