Cmpk2 (cytidine/uridine monophosphate kinase 2) - Rat Genome Database

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Gene: Cmpk2 (cytidine/uridine monophosphate kinase 2) Ictidomys tridecemlineatus
Analyze
Symbol: Cmpk2
Name: cytidine/uridine monophosphate kinase 2
RGD ID: 12731233
Description: ENCODES a protein that exhibits thymidylate kinase activity (ortholog); uridylate kinase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); dTDP biosynthetic process (ortholog); dUDP biosynthetic process (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; de novo pyrimidine biosynthetic pathway; dihydropyrimidinase deficiency pathway; ASSOCIATED WITH multiple sclerosis (ortholog); FOUND IN mitochondrion (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UMP-CMP kinase 2, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629249,140,895 - 49,153,365 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365323,895,755 - 3,908,367 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365323,896,654 - 3,908,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
Cmpk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629249,140,895 - 49,153,365 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365323,895,755 - 3,908,367 (-)EnsemblSpeTri2.0
SpeTri2.0NW_0049365323,896,654 - 3,908,184 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMPK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3826,840,553 - 6,866,635 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl26,840,570 - 6,866,635 (-)EnsemblGRCh38hg38GRCh38
GRCh3726,980,684 - 7,006,766 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3626,905,902 - 6,923,387 (-)NCBINCBI36Build 36hg18NCBI36
Celera26,901,418 - 6,918,887 (-)NCBICelera
Cytogenetic Map2p25.2NCBI
HuRef26,827,170 - 6,854,378 (-)NCBIHuRef
CHM1_126,910,237 - 6,936,319 (-)NCBICHM1_1
T2T-CHM13v2.026,862,071 - 6,888,137 (-)NCBIT2T-CHM13v2.0
Cmpk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391226,519,121 - 26,529,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1226,519,203 - 26,529,836 (+)EnsemblGRCm39 Ensembl
GRCm381226,469,117 - 26,479,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1226,469,204 - 26,479,837 (+)EnsemblGRCm38mm10GRCm38
MGSCv371227,154,080 - 27,164,702 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361227,055,650 - 27,066,102 (+)NCBIMGSCv36mm8
Celera1227,927,424 - 27,938,075 (+)NCBICelera
Cytogenetic Map12A2NCBI
cM Map129.69NCBI
Cmpk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2643,073,706 - 43,085,183 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl643,073,796 - 43,085,183 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx643,386,944 - 43,397,752 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0643,701,813 - 43,712,621 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0643,134,950 - 43,145,758 (+)NCBIRnor_WKY
Rnor_6.0645,683,242 - 45,694,824 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl645,683,234 - 45,694,822 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0654,403,014 - 54,414,586 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4644,128,544 - 44,139,346 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1644,131,662 - 44,142,474 (+)NCBI
Celera642,340,630 - 42,351,433 (+)NCBICelera
Cytogenetic Map6q16NCBI
Cmpk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554872,010,228 - 2,029,175 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554872,010,126 - 2,024,804 (+)NCBIChiLan1.0ChiLan1.0
CMPK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12A6,985,922 - 7,013,703 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v02A6,856,242 - 6,874,567 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CMPK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1174,466,615 - 4,478,546 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,392,411 - 4,405,578 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0174,569,103 - 4,582,289 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl174,569,983 - 4,582,289 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1174,456,522 - 4,469,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0174,465,166 - 4,478,340 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0174,478,967 - 4,492,134 (-)NCBIUU_Cfam_GSD_1.0
CMPK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3128,903,616 - 128,917,871 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13128,903,395 - 128,917,873 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23137,688,692 - 137,704,129 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CMPK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.114100,804,295 - 100,820,565 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl14100,804,400 - 100,819,027 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604511,521,315 - 11,537,626 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmpk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248463,417,626 - 3,430,516 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248463,417,672 - 3,432,207 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005327342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000028426   ⟹   ENSSTOP00000015012
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365323,895,755 - 3,908,367 (-)Ensembl
RefSeq Acc Id: XM_005327342   ⟹   XP_005327399
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629249,140,895 - 49,153,365 (-)NCBI
SpeTri2.0NW_0049365323,896,654 - 3,908,184 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005327399 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3267533 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005327399   ⟸   XM_005327342
- UniProtKB: I3MSB7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000015012   ⟸   ENSSTOT00000028426
Protein Domains
Thymidylate_kin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019402 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000015012.1 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000028426.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Thymidylate_kin-like_dom UniProtKB/TrEMBL
  UMP-CMP_kinase_2 UniProtKB/TrEMBL
NCBI Gene Cmpk2 ENTREZGENE
Pfam Thymidylate_kin UniProtKB/TrEMBL
PIRSF dTMP_TKRP1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3MSB7 ENTREZGENE, UniProtKB/TrEMBL