Cplane1 (ciliogenesis and planar polarity effector complex subunit 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Cplane1 (ciliogenesis and planar polarity effector complex subunit 1) Ictidomys tridecemlineatus
Analyze
Symbol: Cplane1
Name: ciliogenesis and planar polarity effector complex subunit 1 (Ensembl:ciliogenesis and planar polarity effector 1)
RGD ID: 12703596
Description: INVOLVED IN cardiac septum development (ortholog); cerebellum development (ortholog); cilium assembly (ortholog); ASSOCIATED WITH cataract (ortholog); Cornelia de Lange syndrome 1 (ortholog); Developmental Disabilities (ortholog); FOUND IN ciliary transition zone (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C5orf42 homolog; chromosome unknown open reading frame, human C5orf42; ciliogenesis and planar polarity effector 1; CUNH5orf42; LOC101960869
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365184,706,500 - 4,847,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365184,706,496 - 4,847,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cplane1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365184,706,500 - 4,847,316 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365184,706,496 - 4,847,283 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CPLANE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38537,075,669 - 37,249,376 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl537,106,228 - 37,249,376 (-)EnsemblGRCh38hg38GRCh38
GRCh37537,106,337 - 37,249,478 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36537,142,087 - 37,249,612 (-)NCBINCBI36Build 36hg18NCBI36
Celera536,993,297 - 37,136,467 (-)NCBICelera
Cytogenetic Map5p13.2NCBI
HuRef537,059,009 - 37,201,999 (-)NCBIHuRef
CHM1_1537,109,131 - 37,252,316 (-)NCBICHM1_1
T2T-CHM13v2.0537,319,464 - 37,499,342 (-)NCBIT2T-CHM13v2.0
Cplane1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39158,198,509 - 8,300,642 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl158,198,590 - 8,300,642 (+)EnsemblGRCm39 Ensembl
GRCm38158,169,025 - 8,271,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl158,169,106 - 8,271,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37158,119,106 - 8,221,158 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36158,116,266 - 8,218,373 (+)NCBIMGSCv36mm8
Celera158,013,530 - 8,115,870 (+)NCBICelera
Cytogenetic Map15A1NCBI
cM Map153.82NCBI
Cplane1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8258,996,119 - 59,096,817 (+)NCBIGRCr8
mRatBN7.2257,269,195 - 57,369,580 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl257,268,884 - 57,369,500 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0257,274,175 - 57,350,003 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0257,444,373 - 57,472,465 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl257,276,919 - 57,348,481 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0278,930,709 - 78,957,363 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.0277,281,470 - 77,355,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4257,781,798 - 57,879,499 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1257,786,118 - 57,807,727 (+)NCBI
Celera252,883,480 - 52,984,165 (+)NCBICelera
Cytogenetic Map2q16NCBI
Cplane1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542621,868,017 - 21,983,747 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542621,867,876 - 21,991,889 (-)NCBIChiLan1.0ChiLan1.0
CPLANE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2473,086,158 - 73,229,014 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1571,239,850 - 71,382,655 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0573,122,305 - 73,265,343 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1578,402,466 - 78,544,807 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl578,402,466 - 78,544,807 (+)Ensemblpanpan1.1panPan2
CPLANE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1471,435,994 - 71,567,567 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl471,430,575 - 71,567,267 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha471,040,347 - 71,177,378 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0471,939,865 - 72,077,171 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl471,939,851 - 72,077,149 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1471,687,689 - 71,824,420 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0471,808,054 - 71,946,062 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0472,340,676 - 72,477,998 (+)NCBIUU_Cfam_GSD_1.0
CPLANE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1622,380,326 - 22,500,998 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11622,381,001 - 22,501,052 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21623,534,129 - 23,653,296 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CPLANE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1435,981,299 - 36,131,575 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl435,979,110 - 36,130,565 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607126,323,302 - 26,479,971 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cplane1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475917,763,585 - 17,855,954 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475917,763,200 - 17,879,603 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000015373   ⟹   ENSSTOP00000013769
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365184,706,500 - 4,847,316 (+)Ensembl
RefSeq Acc Id: XM_021726570   ⟹   XP_021582245
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
SpeTri2.0NW_0049365184,706,496 - 4,847,283 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021726574   ⟹   XP_021582249
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
SpeTri2.0NW_0049365184,706,496 - 4,847,283 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040273119   ⟹   XP_040129053
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
RefSeq Acc Id: XM_040273120   ⟹   XP_040129054
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,329 (-)NCBI
RefSeq Acc Id: XM_040273121   ⟹   XP_040129055
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
RefSeq Acc Id: XM_040273122   ⟹   XP_040129056
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
RefSeq Acc Id: XM_040273123   ⟹   XP_040129057
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
RefSeq Acc Id: XM_040273124   ⟹   XP_040129058
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
RefSeq Acc Id: XM_040273125   ⟹   XP_040129059
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213226,524,559 - 226,665,360 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021582245   ⟸   XM_021726570
- Peptide Label: isoform X7
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021582249   ⟸   XM_021726574
- Peptide Label: isoform X8
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040129056   ⟸   XM_040273122
- Peptide Label: isoform X3
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129058   ⟸   XM_040273124
- Peptide Label: isoform X5
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129055   ⟸   XM_040273121
- Peptide Label: isoform X2
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129057   ⟸   XM_040273123
- Peptide Label: isoform X4
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129059   ⟸   XM_040273125
- Peptide Label: isoform X6
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129053   ⟸   XM_040273119
- Peptide Label: isoform X1
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040129054   ⟸   XM_040273120
- Peptide Label: isoform X1
- UniProtKB: I3MPM3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000013769   ⟸   ENSSTOT00000015373


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015341 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015373.3 UniProtKB/TrEMBL
InterPro CPLANE1 UniProtKB/TrEMBL
NCBI Gene LOC101960869 ENTREZGENE
PANTHER CILIOGENESIS AND PLANAR POLARITY EFFECTOR 1 UniProtKB/TrEMBL
  PTHR14492 UniProtKB/TrEMBL
Pfam Joubert UniProtKB/TrEMBL
UniProt I3MPM3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-07 Cplane1  ciliogenesis and planar polarity effector complex subunit 1  Cplane1  ciliogenesis and planar polarity effector 1  Symbol and/or name change 5135510 APPROVED
2018-03-20 Cplane1  ciliogenesis and planar polarity effector 1  CUNH5orf42  chromosome unknown C5orf42 homolog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH5orf42  chromosome unknown C5orf42 homolog  LOC101960869  chromosome unknown open reading frame, human C5orf42  Symbol and/or name change 5135510 APPROVED