Dync1i1 (dynein cytoplasmic 1 intermediate chain 1) - Rat Genome Database

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Gene: Dync1i1 (dynein cytoplasmic 1 intermediate chain 1) Ictidomys tridecemlineatus
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Symbol: Dync1i1
Name: dynein cytoplasmic 1 intermediate chain 1
RGD ID: 12702403
Description: ENCODES a protein that exhibits microtubule binding (ortholog); microtubule motor activity (ortholog); INVOLVED IN intracellular transport of virus (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH peripheral nervous system disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN axon cytoplasm (ortholog); cytoplasmic dynein complex (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic dynein 1 intermediate chain 1; dynein cytoplasmic 1 intermediate chain 1, transcript variant X1; dynein cytoplasmic 1 intermediate chain 1, transcript variant X2; dynein cytoplasmic 1 intermediate chain 1, transcript variant X3; dynein cytoplasmic 1 intermediate chain 1, transcript variant X4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511834,336,964 - 34,630,858 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365854,231,711 - 4,527,145 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365854,232,428 - 4,496,878 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dync1i1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511834,336,964 - 34,630,858 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365854,231,711 - 4,527,145 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365854,232,428 - 4,496,878 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC1I1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38795,772,554 - 96,110,322 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl795,772,506 - 96,110,322 (+)EnsemblGRCh38hg38GRCh38
GRCh37795,401,866 - 95,739,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36795,239,838 - 95,565,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 34795,046,552 - 95,372,375NCBI
Celera790,101,694 - 90,427,608 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef790,008,652 - 90,347,456 (+)NCBIHuRef
CHM1_1795,331,673 - 95,669,665 (+)NCBICHM1_1
T2T-CHM13v2.0797,008,421 - 97,346,216 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2794,730,870 - 95,068,701 (+)NCBI
Dync1i1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3965,725,772 - 6,028,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl65,725,639 - 6,028,039 (+)EnsemblGRCm39 Ensembl
GRCm3865,725,600 - 6,028,039 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl65,725,639 - 6,028,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv3765,675,639 - 5,978,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3665,675,808 - 5,978,039 (+)NCBIMGSCv36mm8
Celera65,874,647 - 6,178,900 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map62.26NCBI
Dync1i1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8434,819,313 - 35,132,647 (+)NCBIGRCr8
mRatBN7.2433,852,597 - 34,166,159 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl433,852,927 - 34,166,149 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx438,811,924 - 39,125,122 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0434,738,100 - 35,051,306 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0433,147,869 - 33,461,066 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0430,807,755 - 31,121,097 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl430,807,879 - 31,121,090 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0430,714,935 - 31,028,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4430,496,410 - 30,809,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1430,547,347 - 30,880,140 (+)NCBI
Celera429,377,971 - 29,690,505 (+)NCBICelera
Cytogenetic Map4q21NCBI
Dync1i1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543212,353,993 - 12,658,157 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543212,383,582 - 12,657,491 (+)NCBIChiLan1.0ChiLan1.0
DYNC1I1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26113,609,266 - 113,935,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17161,873,907 - 162,199,996 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0787,724,604 - 88,050,624 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17101,311,839 - 101,637,149 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7101,344,053 - 101,648,607 (+)Ensemblpanpan1.1panPan2
DYNC1I1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,967,936 - 21,279,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,968,011 - 21,278,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1420,526,736 - 20,837,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01420,790,257 - 21,100,686 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1420,790,150 - 21,100,690 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,935,563 - 21,246,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,669,529 - 20,980,440 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,927,298 - 21,238,416 (+)NCBIUU_Cfam_GSD_1.0
DYNC1I1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl975,414,755 - 75,760,519 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1975,414,663 - 75,760,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2983,031,974 - 83,173,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DYNC1I1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12152,950,983 - 53,271,113 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2152,950,874 - 53,271,130 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604251,081,941 - 51,402,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dync1i1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248132,490,706 - 2,825,412 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248132,490,745 - 2,826,230 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000008084   ⟹   ENSSTOP00000007239
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365854,231,711 - 4,527,145 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000032283   ⟹   ENSSTOP00000025445
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365854,231,711 - 4,527,145 (-)Ensembl
RefSeq Acc Id: XM_005331795   ⟹   XP_005331852
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511834,336,964 - 34,630,858 (+)NCBI
SpeTri2.0NW_0049365854,232,428 - 4,496,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005331796   ⟹   XP_005331853
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511834,366,407 - 34,630,858 (+)NCBI
SpeTri2.0NW_0049365854,232,428 - 4,496,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005331798   ⟹   XP_005331855
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511834,366,407 - 34,630,858 (+)NCBI
SpeTri2.0NW_0049365854,232,428 - 4,496,878 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005331801   ⟹   XP_005331858
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440511834,366,407 - 34,630,858 (+)NCBI
SpeTri2.0NW_0049365854,232,428 - 4,496,878 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005331853   ⟸   XM_005331796
- Peptide Label: isoform X2
- UniProtKB: A0A287CVU1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005331858   ⟸   XM_005331801
- Peptide Label: isoform X4
- UniProtKB: I3MB00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005331855   ⟸   XM_005331798
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005331852   ⟸   XM_005331795
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSSTOP00000025445   ⟸   ENSSTOT00000032283
Ensembl Acc Id: ENSSTOP00000007239   ⟸   ENSSTOT00000008084


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008078 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008084.3 UniProtKB/TrEMBL
  ENSSTOT00000032283.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro DYNC1I1/DYNC1I2 UniProtKB/TrEMBL
  Dynein_IC UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Dync1i1 ENTREZGENE
PANTHER CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 1 UniProtKB/TrEMBL
  DYNEIN INTERMEDIATE CHAIN UniProtKB/TrEMBL
Pfam Dynein_IC2 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A287CVU1 ENTREZGENE, UniProtKB/TrEMBL
  I3MB00 ENTREZGENE, UniProtKB/TrEMBL