Dync1i1 (dynein cytoplasmic 1 intermediate chain 1) - Rat Genome Database

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Gene: Dync1i1 (dynein cytoplasmic 1 intermediate chain 1) Chinchilla lanigera
Analyze
Symbol: Dync1i1
Name: dynein cytoplasmic 1 intermediate chain 1
RGD ID: 8873880
Description: ENCODES a protein that exhibits dynein light chain binding (ortholog); microtubule binding (ortholog); microtubule motor activity (ortholog); INVOLVED IN intracellular transport of virus (ortholog); vesicle transport along microtubule (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH genetic disease (ortholog); peripheral nervous system disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN axon cytoplasm (ortholog); cytoplasm (ortholog); cytoplasmic dynein complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cytoplasmic dynein 1 intermediate chain 1; dynein, cytoplasmic 1, intermediate chain 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543212,353,993 - 12,658,157 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543212,383,582 - 12,657,491 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dync1i1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543212,353,993 - 12,658,157 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543212,383,582 - 12,657,491 (+)NCBIChiLan1.0ChiLan1.0
DYNC1I1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38795,772,554 - 96,110,322 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl795,772,506 - 96,110,322 (+)EnsemblGRCh38hg38GRCh38
GRCh37795,401,866 - 95,739,634 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36795,239,838 - 95,565,660 (+)NCBINCBI36Build 36hg18NCBI36
Build 34795,046,552 - 95,372,375NCBI
Celera790,101,694 - 90,427,608 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef790,008,652 - 90,347,456 (+)NCBIHuRef
CHM1_1795,331,673 - 95,669,665 (+)NCBICHM1_1
T2T-CHM13v2.0797,008,421 - 97,346,216 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2794,730,870 - 95,068,701 (+)NCBI
Dync1i1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3965,725,772 - 6,028,030 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl65,725,639 - 6,028,039 (+)EnsemblGRCm39 Ensembl
GRCm3865,725,600 - 6,028,039 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl65,725,639 - 6,028,039 (+)EnsemblGRCm38mm10GRCm38
MGSCv3765,675,639 - 5,978,039 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3665,675,808 - 5,978,039 (+)NCBIMGSCv36mm8
Celera65,874,647 - 6,178,900 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map62.26NCBI
Dync1i1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8434,819,313 - 35,132,647 (+)NCBIGRCr8
mRatBN7.2433,852,597 - 34,166,159 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl433,852,927 - 34,166,149 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx438,811,924 - 39,125,122 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0434,738,100 - 35,051,306 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0433,147,869 - 33,461,066 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0430,807,755 - 31,121,097 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl430,807,879 - 31,121,090 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0430,714,935 - 31,028,010 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4430,496,410 - 30,809,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1430,547,347 - 30,880,140 (+)NCBI
Celera429,377,971 - 29,690,505 (+)NCBICelera
Cytogenetic Map4q21NCBI
DYNC1I1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26113,609,266 - 113,935,357 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17161,873,907 - 162,199,996 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0787,724,604 - 88,050,624 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17101,311,839 - 101,637,149 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7101,344,053 - 101,648,607 (+)Ensemblpanpan1.1panPan2
DYNC1I1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,967,936 - 21,279,044 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,968,011 - 21,278,363 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1420,526,736 - 20,837,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01420,790,257 - 21,100,686 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1420,790,150 - 21,100,690 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,935,563 - 21,246,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01420,669,529 - 20,980,440 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,927,298 - 21,238,416 (+)NCBIUU_Cfam_GSD_1.0
Dync1i1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511834,336,964 - 34,630,858 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365854,231,711 - 4,527,145 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365854,232,428 - 4,496,878 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC1I1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl975,414,755 - 75,760,519 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1975,414,663 - 75,760,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2983,031,974 - 83,173,009 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DYNC1I1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12152,950,983 - 53,271,113 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2152,950,874 - 53,271,130 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604251,081,941 - 51,402,088 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dync1i1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248132,490,706 - 2,825,412 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248132,490,745 - 2,826,230 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000009314   ⟹   ENSCLAP00000009185
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543212,353,993 - 12,658,157 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009315   ⟹   ENSCLAP00000009186
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543212,383,220 - 12,658,157 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000009316   ⟹   ENSCLAP00000009187
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543212,383,220 - 12,658,157 (+)Ensembl
RefSeq Acc Id: XM_013516078   ⟹   XP_013371532
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543212,383,582 - 12,657,491 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013371532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000009185.1
  ENSCLAP00000009186
  ENSCLAP00000009186.1
  ENSCLAP00000009187.1
Reference Protein Sequences
RefSeq Acc Id: XP_013371532   ⟸   XM_013516078
- UniProtKB: A0A8C2V880 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000009186   ⟸   ENSCLAT00000009315
RefSeq Acc Id: ENSCLAP00000009187   ⟸   ENSCLAT00000009316
RefSeq Acc Id: ENSCLAP00000009185   ⟸   ENSCLAT00000009314


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006396 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000009314.1 UniProtKB/TrEMBL
  ENSCLAT00000009315 ENTREZGENE
  ENSCLAT00000009315.1 UniProtKB/TrEMBL
  ENSCLAT00000009316.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro DYNC1I1/DYNC1I2 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene Dync1i1 ENTREZGENE
PANTHER CYTOPLASMIC DYNEIN 1 INTERMEDIATE CHAIN 1 UniProtKB/TrEMBL
  DYNEIN INTERMEDIATE CHAIN UniProtKB/TrEMBL
Pfam Dynein_IC2 UniProtKB/TrEMBL
  WD40 UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A8C2V4E8_CHILA UniProtKB/TrEMBL
  A0A8C2V5P1_CHILA UniProtKB/TrEMBL
  A0A8C2V880 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dync1i1  dynein cytoplasmic 1 intermediate chain 1    dynein, cytoplasmic 1, intermediate chain 1  Symbol and/or name change 5135510 APPROVED