Decr1 (2,4-dienoyl-CoA reductase 1) - Rat Genome Database

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Gene: Decr1 (2,4-dienoyl-CoA reductase 1) Ictidomys tridecemlineatus
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Symbol: Decr1
Name: 2,4-dienoyl-CoA reductase 1
RGD ID: 12700904
Description: ENCODES a protein that exhibits 2,4-dienoyl-CoA reductase (NADPH) activity (inferred); identical protein binding (inferred); NADPH binding (inferred); INVOLVED IN fatty acid beta-oxidation (inferred); positive regulation of cold-induced thermogenesis (inferred); ASSOCIATED WITH 2,4-Dienoyl-CoA Reductase Deficiency (ortholog); lipid metabolism disorder (ortholog); Nijmegen breakage syndrome (ortholog); FOUND IN catalytic complex (inferred); cytosol (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 2,4-dienoyl-CoA reductase 1, mitochondrial; 2,4-dienoyl-CoA reductase 1, transcript variant X1; 2,4-dienoyl-CoA reductase 1, transcript variant X2; 2,4-dienoyl-CoA reductase [(3E)-enoyl-CoA-producing], mitochondrial; 2,4-dienoyl-CoA reductase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530343,936,906 - 43,975,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365443,816,653 - 3,853,632 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365443,816,543 - 3,853,288 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Decr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530343,936,906 - 43,975,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365443,816,653 - 3,853,632 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365443,816,543 - 3,853,288 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DECR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38890,001,477 - 90,053,633 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl890,001,405 - 90,053,633 (+)EnsemblGRCh38hg38GRCh38
GRCh37891,013,705 - 91,065,861 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36891,082,756 - 91,133,403 (+)NCBINCBI36Build 36hg18NCBI36
Build 34891,082,755 - 91,133,403NCBI
Celera887,208,502 - 87,259,149 (+)NCBICelera
Cytogenetic Map8q21.3NCBI
HuRef886,223,894 - 86,274,542 (+)NCBIHuRef
CHM1_1891,054,504 - 91,105,151 (+)NCBICHM1_1
T2T-CHM13v2.0891,125,148 - 91,177,304 (+)NCBIT2T-CHM13v2.0
Decr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39415,917,240 - 15,945,377 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl415,917,240 - 15,945,507 (-)EnsemblGRCm39 Ensembl
GRCm38415,917,240 - 15,945,377 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl415,917,240 - 15,945,507 (-)EnsemblGRCm38mm10GRCm38
MGSCv37415,844,387 - 15,872,654 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36415,844,387 - 15,872,654 (-)NCBIMGSCv36mm8
Celera415,720,515 - 15,748,774 (-)NCBICelera
Cytogenetic Map4A2NCBI
cM Map46.66NCBI
Decr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8534,208,195 - 34,236,074 (-)NCBIGRCr8
mRatBN7.2529,411,172 - 29,439,054 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl529,411,172 - 29,439,018 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx531,567,474 - 31,595,241 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0533,160,140 - 33,187,907 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0533,120,325 - 33,148,092 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0529,573,893 - 29,601,731 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl529,573,898 - 29,601,748 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0534,253,236 - 34,280,749 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4530,492,196 - 30,520,172 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1530,492,195 - 30,520,172 (-)NCBI
Celera528,616,707 - 28,644,572 (-)NCBICelera
Cytogenetic Map5q13NCBI
Decr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554176,893,231 - 6,931,754 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554176,893,231 - 6,931,754 (+)NCBIChiLan1.0ChiLan1.0
DECR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27107,394,558 - 107,461,629 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1882,934,216 - 83,001,276 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0886,690,816 - 86,755,379 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1888,642,676 - 88,693,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl888,642,172 - 88,693,224 (+)Ensemblpanpan1.1panPan2
DECR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12935,495,348 - 35,544,955 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2935,495,261 - 35,544,955 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2935,646,866 - 35,697,851 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02935,692,661 - 35,742,310 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2935,692,704 - 35,744,794 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12935,684,839 - 35,729,541 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02935,703,896 - 35,747,852 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02936,138,067 - 36,183,640 (+)NCBIUU_Cfam_GSD_1.0
DECR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl446,731,360 - 46,767,422 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1446,731,359 - 46,767,427 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2451,207,727 - 51,243,866 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DECR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1885,086,843 - 85,129,267 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl885,086,874 - 85,129,160 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603955,747,223 - 55,792,311 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Decr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247441,963,825 - 2,003,643 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247441,965,605 - 2,003,299 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000009145   ⟹   ENSSTOP00000008199
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365443,816,653 - 3,853,632 (+)Ensembl
RefSeq Acc Id: XM_005328638   ⟹   XP_005328695
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530343,936,906 - 43,975,997 (-)NCBI
SpeTri2.0NW_0049365443,816,543 - 3,853,288 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013360105   ⟹   XP_013215559
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530343,936,906 - 43,975,886 (-)NCBI
SpeTri2.0NW_0049365443,816,842 - 3,853,288 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328695 (Get FASTA)   NCBI Sequence Viewer  
  XP_013215559 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000008199.3
GenBank Protein KAG3273921 (Get FASTA)   NCBI Sequence Viewer  
  KAG3273922 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328695   ⟸   XM_005328638
- Peptide Label: isoform X1
- UniProtKB: I3MD03 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013215559   ⟸   XM_013360105
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSSTOP00000008199   ⟸   ENSSTOT00000009145


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009147 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009145.3 UniProtKB/TrEMBL
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  SDR_fam UniProtKB/TrEMBL
NCBI Gene Decr1 ENTREZGENE
PANTHER 2,4-DIENOYL-COA REDUCTASE [(3E)-ENOYL-COA-PRODUCING], MITOCHONDRIAL UniProtKB/TrEMBL
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE UniProtKB/TrEMBL
Pfam adh_short_C2 UniProtKB/TrEMBL
PRINTS GDHRDH UniProtKB/TrEMBL
Superfamily-SCOP SSF51735 UniProtKB/TrEMBL
UniProt I3MD03 ENTREZGENE, UniProtKB/TrEMBL