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Gene: Nup85 (nucleoporin 85) Ictidomys tridecemlineatus

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Symbol:

Nup85

Name:

nucleoporin 85

RGD ID:

12694883

Description:

ENCODES a protein that exhibits structural constituent of nuclear pore (inferred); INVOLVED IN chemotaxis (inferred); lamellipodium assembly (inferred); macrophage chemotaxis (inferred); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH nephrotic syndrome type 17 (ortholog); FOUND IN actin cytoskeleton (inferred); ciliary basal body (inferred); cytosol (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nuclear pore complex protein Nup85; nucleoporin 85, transcript variant X1; nucleoporin 85, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NUP85 (nucleoporin 85)	NCBI	Ortholog
Mus musculus (house mouse):	Nup85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nup85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nup85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NUP85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NUP85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NUP85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	NUP85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nup85 (nucleoporin 85)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	5,880,087 - 5,908,344 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	503,720 - 531,875 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	503,698 - 531,851 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nup85	Squirrel	nephrotic syndrome type 17		ISO	NUP85 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nup85	Squirrel	nephrotic syndrome type 17		ISO	NUP85 (Homo sapiens)	7240710		OMIM

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nup85	Squirrel	chemotaxis	acts_upstream_of_or_within	IEA	UniProtKB:Q8R480 and ensembl:ENSMUSP00000021085	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	lamellipodium assembly	acts_upstream_of_or_within	IEA	UniProtKB:Q8R480 and ensembl:ENSMUSP00000021085	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	macrophage chemotaxis	acts_upstream_of_or_within	IEA	UniProtKB:Q8R480 and ensembl:ENSMUSP00000021085	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	mRNA export from nucleus	involved_in	IEA	PANTHER:PTN000332535	150520179		TreeGrafter	GO_REF:0000118
Nup85	Squirrel	mRNA transport	involved_in	IEA	UniProtKB-KW:KW-0509	150520179		UniProt	GO_REF:0000043
Nup85	Squirrel	nephron development	involved_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	positive regulation of DNA-templated transcription	involved_in	IEA	PANTHER:PTN000332535	150520179		TreeGrafter	GO_REF:0000118
Nup85	Squirrel	protein import into nucleus	involved_in	IEA	PANTHER:PTN000332535	150520179		TreeGrafter	GO_REF:0000118
Nup85	Squirrel	protein transport	involved_in	IEA	UniProtKB-KW:KW-0653 and UniProtKB-KW:KW-0811	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nup85	Squirrel	actin cytoskeleton	located_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	ciliary basal body	located_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	cytosol	located_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	intracellular membrane-bounded organelle	located_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	kinetochore	located_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043
Nup85	Squirrel	nuclear envelope	located_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	nuclear membrane	located_in	IEA	UniRule:UR000995752	150520179		UniProt	GO_REF:0000104
Nup85	Squirrel	nuclear pore	part_of	IEA	UniProtKB-KW:KW-0906	150520179		UniProt	GO_REF:0000043
Nup85	Squirrel	nuclear pore	part_of	IEA	UniProtKB-SubCell:SL-0185	150520179		UniProt	GO_REF:0000044
Nup85	Squirrel	nuclear pore outer ring	part_of	IEA	PANTHER:PTN000332535	150520179		TreeGrafter	GO_REF:0000118
Nup85	Squirrel	nuclear pore outer ring	part_of	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	nucleoplasm	located_in	IEA	UniProtKB:Q9BW27 and ensembl:ENSP00000245544	150520179		Ensembl	GO_REF:0000107
Nup85	Squirrel	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nup85	Squirrel	protein binding	enables	ISO	UniProtKB:Q7L5D6	9068941	PMID:32296183	IntAct	PMID:32296183
Nup85	Squirrel	protein binding	enables	ISO	UniProtKB:Q8WUM0	9068941	PMID:27194810 more ...	IntAct	PMID:27194810 more ...
Nup85	Squirrel	protein binding	enables	ISO	UniProtKB:Q12769 more ...	9068941	PMID:24315095	IntAct	PMID:24315095
Nup85	Squirrel	protein binding	enables	ISO	UniProtKB:Q12769	9068941	PMID:30179222	IntAct	PMID:30179222
Nup85	Squirrel	protein binding	enables	ISO	UniProtKB:Q96EE3	9068941	PMID:26391640 and PMID:26496610	IntAct	PMID:26391640 and PMID:26496610
Nup85	Squirrel	protein binding	enables	ISO	UniProtKB:P55735 more ...	9068941	PMID:15146057	UniProt	PMID:15146057
Nup85	Squirrel	protein binding	enables	ISO	UniProtKB:P41597-2	9068941	PMID:25283965	IntAct	PMID:25283965
Nup85	Squirrel	structural constituent of nuclear pore	enables	IEA	PANTHER:PTN000332535	150520179		TreeGrafter	GO_REF:0000118

RGD Manual Annotations

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Nup85	Squirrel	mRNA nuclear export pathway		ISO	NUP85 (Homo sapiens)	9068941		RGD	PMID:25184662 and REF_RGD_ID:9743947

PMID:30032202

Nup85
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	5,880,087 - 5,908,344 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	503,720 - 531,875 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	503,698 - 531,851 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NUP85
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	75,205,679 - 75,235,758 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	75,205,659 - 75,235,758 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	73,201,774 - 73,231,853 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	70,713,192 - 70,743,449 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	70,713,380 - 70,743,447	NCBI
Celera	17	69,793,975 - 69,824,185 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	68,611,339 - 68,641,549 (+)	NCBI		HuRef
CHM1_1	17	73,266,184 - 73,296,417 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	76,097,807 - 76,127,836 (+)	NCBI		T2T-CHM13v2.0

Nup85
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	115,455,264 - 115,474,750 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	115,455,260 - 115,474,811 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	115,564,432 - 115,583,924 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	115,564,434 - 115,583,985 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	115,425,758 - 115,445,226 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	115,380,572 - 115,400,075 (+)	NCBI		MGSCv36	mm8
Celera	11	127,337,030 - 127,351,679 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	80.87	NCBI

Nup85
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	101,305,241 - 101,323,980 (+)	NCBI		GRCr8
mRatBN7.2	10	100,806,482 - 100,825,029 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	100,806,437 - 100,825,043 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	105,866,595 - 105,885,241 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	105,329,668 - 105,348,314 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	100,727,451 - 100,746,001 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	104,118,999 - 104,137,258 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	104,118,945 - 104,137,319 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	104,144,378 - 104,162,637 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	105,645,505 - 105,665,079 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	105,660,008 - 105,679,580 (+)	NCBI
Celera	10	99,381,083 - 99,399,472 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Nup85
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955553	2,079,503 - 2,107,807 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955553	2,079,418 - 2,107,894 (+)	NCBI	ChiLan1.0	ChiLan1.0

NUP85
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	91,243,861 - 91,275,146 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	96,067,989 - 96,098,214 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	69,152,452 - 69,182,688 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	74,715,056 - 74,735,706 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	74,708,654 - 74,735,628 (+)	Ensembl	panpan1.1		panPan2

NUP85
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	5,251,387 - 5,298,096 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	5,251,419 - 5,285,338 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	5,930,369 - 5,977,004 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	5,921,442 - 5,968,402 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	5,921,442 - 5,968,410 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	5,960,174 - 6,006,787 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	6,070,418 - 6,117,068 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	6,130,422 - 6,177,075 (-)	NCBI		UU_Cfam_GSD_1.0

NUP85
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	6,071,812 - 6,103,979 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	6,072,731 - 6,103,972 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	6,035,178 - 6,066,433 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NUP85
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	46,433,821 - 46,463,822 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	46,433,579 - 46,463,759 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	17,203,748 - 17,236,457 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nup85
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	5,022,617 - 5,057,140 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	5,023,255 - 5,057,140 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005332549	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021731211	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268470	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040268471	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000015180 ⟹ ENSSTOP00000013601

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936594	503,720 - 531,875 (+)	Ensembl

RefSeq Acc Id:

XM_005332549 ⟹ XP_005332606

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,880,087 - 5,908,344 (-)	NCBI
SpeTri2.0	NW_004936594	503,698 - 531,851 (+)	NCBI

Sequence:

show sequence

CCCGGGCGGGGTCCTCTCTCGCAGCCGGCTCTGAGCGGGAGTCTGGAACGCGCAGCGCTGGCGGCTCCGCGAGGTCCAGGTGGCACCATGGAGGAGCTGGACGGCGAGCCGACAGTCACTTTGATTCC
AGGTATGAATTCCAAGAAGAAGCAAATGTGTTTTGACTGGGGTCCTGGGGAGATGTTGGTGTGCGAAACCTCCTTCAACAAAAAAGAAAAATCAGAGACAGCCCCAAACTGTCCCTTTATCTATATCA
TCCGGAAAGATGTAGATGTTTACTCTCAGATTTTGAGAAAACTCTTTAATGAATCCCATGGAATCTTTGTGGGTCTCCAGAGAATTGAAGAAGAATTGACTGGAAAGTCCAGAAAAGCTCAATTGGTT
CGAGTGAGTAAAAACTATCGATCAGTCATAAGAGCCTGTATGGAGGAAATGCACCAATTTGCAATTGCTGCAAAGGATCCAGCCAGTGGTCGCCAGTTCAGCAGCCAGGTCTCCATTTTGTCAGCAAT
GGAGCTCATATGGAACCTGTGTGAGATTCTTTTTATTGAAGTGGCCCCAGCTGGCCCTCTCCTCCTCCATCTCCTCGACTGGGTCCGACTCCATGTGTGCGAAGTGGACAGTTTGTCAGCAGACGTTC
TGGGCAGTGAGAATCCAAGCAAACACGAGAGCTTTTGGAACTTGGTGACCGTCTTGGTGCTTCAGGGTCGGCTAGATGAGGCCCGACAGATGCTGTCCAAGGAGGCAGATGCCAGCCCCACCTCTGCA
GGCATGTGTCGAATCCTGGGGGACCTGATGAGGACAATGCCTATTCTCAGTCCTGGCAACACTCAGACGCTGACTGAGCTGGAGCTGAAGTGGCAGCACTGGCGAGAGGAGTGTGAGCGGCACCTGCA
GGATGGCACGTTTGCCTCCAGCCCCCGCCTAGAGTCTCTCTGCAAGATCATGCTGGGAGATGAGGCCGCCTTGTTAGAGCAGAAGGAACTTCTGAGTAATTGGTACCATTTCCTAGTCACTCGGCTTC
TGTACTCTCATCCCACAGTAAAACCCATTGATCTGCACTTCTATGCCCAGTCCAGCCTGGACATGTTTCTGGGAGGTGAGAGCAGCCCAGAGCCCCTGGACAACATCTTGATGGCGGCCTTTGAGTTT
GACATCCACCAAGTGATCAAGGAATGCAGCATTGCCTTGAGCAACTGGTGGTTTGTGGCCCACCTGACAGACCTGCTGGATCACTGTAGGCTTCTCCAGGCACACAACCTCTATTTTGGTTCCAACAT
GAGAGAATTCCTCCTACTGGAATATGCCTCAGGACTGTTTGCTCATCACAGCCTTTGGCAGCTAGGGGTGGATTACTTTGACTACTGTCCTGAACTGGGCCGAGTTTCTTTGGAGCTACACATTGAGC
GAATCCCTCTCAACACAGAGCAGAAAGCCCTCAAGGTGCTGCGAATTTGTGAACAGCGGCAGATGACTGAACAGGTCCGCAGCATCTGTAAGATCTTGGCGATGAAGGCTGTCCGCAACAACCGTCTG
GGCTCTGCCCTCTCTTGGAGCATCCGTGCCAAAGATGCCGCCTTTGCCACACTTGTGTCAGACAGATTCCTCAGGGATTACTGTGAGCGAGGTTGCTTTTCCGACTTGGATCTCATTGACAACTTGGG
GCCAGCCATGATGCTTAGTGATCGGCTAACATTCCTGGGAAAATACCGTGAGTTCCACCGATTATATGGAGAGAAGCGCTTTGGGGATGCTGCGTCTCTCCTGTTGTCTCTGATGACTTCCCAGATTG
CGCCCCGCTCTTTCTGGATGACTCTGCTCACAGATGCCCTGCCCCTTTTGGAACAGAAACAGGTGATTTTCTCAGCAGAACAAACATACGAGCTGATGCGATGTCTGGAGGACTTGACTTCAGGGAAG
CCAGAGCGTGCAGAGCCTGATGCACAGCGACTACAGGACGACGATATAGAAACCACTAAGGTGGAAATGCTGAGACTCGCTCTGGCCCGGAATCTTGCTCGCGCAATAATAAGAGAAGGCTCATTGGA
AGGTTCTTGAGGTCAGCTGAGAACTGCTGCAACTATATGGCAATGTATATATAGATTTTTTAAAATAATTAAACGTTTTCTTTTGCAA

hide sequence

RefSeq Acc Id:

XM_040268470 ⟹ XP_040124404

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,880,087 - 5,907,990 (-)	NCBI

RefSeq Acc Id:

XM_040268471 ⟹ XP_040124405

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	5,880,087 - 5,908,135 (-)	NCBI


Protein RefSeqs	XP_005332606	(Get FASTA)	NCBI Sequence Viewer
	XP_040124404	(Get FASTA)	NCBI Sequence Viewer
	XP_040124405	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000013601.2
GenBank Protein	KAG3268525	(Get FASTA)	NCBI Sequence Viewer
	KAG3268526	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005332606 ⟸ XM_005332549
- Peptide Label:	isoform X1
- UniProtKB:	I3MPA7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEELDGEPTVTLIPGMNSKKKQMCFDWGPGEMLVCETSFNKKEKSETAPNCPFIYIIRKDVDVYSQILRKLFNESHGIFVGLQRIEEELTGKSRKAQLVRVSKNYRSVIRACMEEMHQFAIAAKDPAS GRQFSSQVSILSAMELIWNLCEILFIEVAPAGPLLLHLLDWVRLHVCEVDSLSADVLGSENPSKHESFWNLVTVLVLQGRLDEARQMLSKEADASPTSAGMCRILGDLMRTMPILSPGNTQTLTELEL KWQHWREECERHLQDGTFASSPRLESLCKIMLGDEAALLEQKELLSNWYHFLVTRLLYSHPTVKPIDLHFYAQSSLDMFLGGESSPEPLDNILMAAFEFDIHQVIKECSIALSNWWFVAHLTDLLDHC RLLQAHNLYFGSNMREFLLLEYASGLFAHHSLWQLGVDYFDYCPELGRVSLELHIERIPLNTEQKALKVLRICEQRQMTEQVRSICKILAMKAVRNNRLGSALSWSIRAKDAAFATLVSDRFLRDYCE RGCFSDLDLIDNLGPAMMLSDRLTFLGKYREFHRLYGEKRFGDAASLLLSLMTSQIAPRSFWMTLLTDALPLLEQKQVIFSAEQTYELMRCLEDLTSGKPERAEPDAQRLQDDDIETTKVEMLRLALA RNLARAIIREGSLEGS hide sequence

RefSeq Acc Id:	XP_040124405 ⟸ XM_040268471
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040124404 ⟸ XM_040268470
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSSTOP00000013601 ⟸ ENSSTOT00000015180

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015175	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000015180.3	UniProtKB/TrEMBL
InterPro	Nucleoporin_Nup85	UniProtKB/TrEMBL
NCBI Gene	Nup85	ENTREZGENE
PANTHER	NUCLEAR PORE COMPLEX PROTEIN NUP85	UniProtKB/TrEMBL
	PTHR13373	UniProtKB/TrEMBL
Pfam	Nucleopor_Nup85	UniProtKB/TrEMBL
UniProt	I3MPA7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

RGD Manual Annotations