Nup85 (nucleoporin 85) - Rat Genome Database

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Gene: Nup85 (nucleoporin 85) Ictidomys tridecemlineatus
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Symbol: Nup85
Name: nucleoporin 85
RGD ID: 12694883
Description: ENCODES a protein that exhibits structural constituent of nuclear pore (inferred); INVOLVED IN chemotaxis (ortholog); lamellipodium assembly (ortholog); macrophage chemotaxis (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH nephrotic syndrome type 17 (ortholog); FOUND IN nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore complex protein Nup85; nucleoporin 85, transcript variant X1; nucleoporin 85, transcript variant X2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,880,087 - 5,908,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594503,720 - 531,875 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594503,698 - 531,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nup85
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,880,087 - 5,908,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594503,720 - 531,875 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594503,698 - 531,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP85
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,205,679 - 75,235,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,205,659 - 75,235,758 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,201,774 - 73,231,853 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,713,192 - 70,743,449 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,713,380 - 70,743,447NCBI
Celera1769,793,975 - 69,824,185 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,611,339 - 68,641,549 (+)NCBIHuRef
CHM1_11773,266,184 - 73,296,417 (+)NCBICHM1_1
T2T-CHM13v2.01776,097,807 - 76,127,836 (+)NCBIT2T-CHM13v2.0
Nup85
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,455,264 - 115,474,750 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,455,260 - 115,474,811 (+)EnsemblGRCm39 Ensembl
GRCm3811115,564,432 - 115,583,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,564,434 - 115,583,985 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,425,758 - 115,445,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,380,572 - 115,400,075 (+)NCBIMGSCv36mm8
Celera11127,337,030 - 127,351,679 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.87NCBI
Nup85
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,305,241 - 101,323,980 (+)NCBIGRCr8
mRatBN7.210100,806,482 - 100,825,029 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,806,437 - 100,825,043 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,866,595 - 105,885,241 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,329,668 - 105,348,314 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,727,451 - 100,746,001 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,118,999 - 104,137,258 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,118,945 - 104,137,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,144,378 - 104,162,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,645,505 - 105,665,079 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,660,008 - 105,679,580 (+)NCBI
Celera1099,381,083 - 99,399,472 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Nup85
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,079,503 - 2,107,807 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,079,418 - 2,107,894 (+)NCBIChiLan1.0ChiLan1.0
NUP85
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,243,861 - 91,275,146 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,067,989 - 96,098,214 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,152,452 - 69,182,688 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,715,056 - 74,735,706 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,708,654 - 74,735,628 (+)Ensemblpanpan1.1panPan2
NUP85
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,251,387 - 5,298,096 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,251,419 - 5,285,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,930,369 - 5,977,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,921,442 - 5,968,402 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,921,442 - 5,968,410 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,960,174 - 6,006,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,070,418 - 6,117,068 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,130,422 - 6,177,075 (-)NCBIUU_Cfam_GSD_1.0
NUP85
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,071,812 - 6,103,979 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,072,731 - 6,103,972 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,035,178 - 6,066,433 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP85
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,433,821 - 46,463,822 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,433,579 - 46,463,759 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,203,748 - 17,236,457 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup85
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,022,617 - 5,057,140 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,023,255 - 5,057,140 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000015180   ⟹   ENSSTOP00000013601
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936594503,720 - 531,875 (+)Ensembl
RefSeq Acc Id: XM_005332549   ⟹   XP_005332606
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056025,880,087 - 5,908,344 (-)NCBI
SpeTri2.0NW_004936594503,698 - 531,851 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040268470   ⟹   XP_040124404
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056025,880,087 - 5,907,990 (-)NCBI
RefSeq Acc Id: XM_040268471   ⟹   XP_040124405
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056025,880,087 - 5,908,135 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005332606 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124404 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124405 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013601.2
GenBank Protein KAG3268525 (Get FASTA)   NCBI Sequence Viewer  
  KAG3268526 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005332606   ⟸   XM_005332549
- Peptide Label: isoform X1
- UniProtKB: I3MPA7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040124405   ⟸   XM_040268471
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040124404   ⟸   XM_040268470
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000013601   ⟸   ENSSTOT00000015180


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015175 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015180.3 UniProtKB/TrEMBL
InterPro Nucleoporin_Nup85 UniProtKB/TrEMBL
NCBI Gene Nup85 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP85 UniProtKB/TrEMBL
  PTHR13373 UniProtKB/TrEMBL
Pfam Nucleopor_Nup85 UniProtKB/TrEMBL
UniProt I3MPA7 ENTREZGENE, UniProtKB/TrEMBL