NUP85 (nucleoporin 85) - Rat Genome Database

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Gene: NUP85 (nucleoporin 85) Canis lupus familiaris
Analyze
Symbol: NUP85
Name: nucleoporin 85
RGD ID: 12334322
Description: ENCODES a protein that exhibits structural constituent of nuclear pore (inferred); INVOLVED IN chemotaxis (ortholog); lamellipodium assembly (ortholog); macrophage chemotaxis (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH nephrotic syndrome type 17 (ortholog); FOUND IN nuclear envelope (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nuclear pore complex protein Nup85
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,251,387 - 5,298,096 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,251,419 - 5,285,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,930,369 - 5,977,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,921,442 - 5,968,402 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,921,442 - 5,968,410 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,960,174 - 6,006,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,070,418 - 6,117,068 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,130,422 - 6,177,075 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
NUP85
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.195,251,387 - 5,298,096 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl95,251,419 - 5,285,338 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,930,369 - 5,977,004 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,921,442 - 5,968,402 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,921,442 - 5,968,410 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,960,174 - 6,006,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,070,418 - 6,117,068 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,130,422 - 6,177,075 (-)NCBIUU_Cfam_GSD_1.0
NUP85
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381775,205,679 - 75,235,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1775,205,659 - 75,235,758 (+)EnsemblGRCh38hg38GRCh38
GRCh371773,201,774 - 73,231,853 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361770,713,192 - 70,743,449 (+)NCBINCBI36Build 36hg18NCBI36
Build 341770,713,380 - 70,743,447NCBI
Celera1769,793,975 - 69,824,185 (+)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1768,611,339 - 68,641,549 (+)NCBIHuRef
CHM1_11773,266,184 - 73,296,417 (+)NCBICHM1_1
T2T-CHM13v2.01776,097,807 - 76,127,836 (+)NCBIT2T-CHM13v2.0
Nup85
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911115,455,264 - 115,474,750 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11115,455,260 - 115,474,811 (+)EnsemblGRCm39 Ensembl
GRCm3811115,564,432 - 115,583,924 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11115,564,434 - 115,583,985 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711115,425,758 - 115,445,226 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611115,380,572 - 115,400,075 (+)NCBIMGSCv36mm8
Celera11127,337,030 - 127,351,679 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.87NCBI
Nup85
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810101,305,241 - 101,323,980 (+)NCBIGRCr8
mRatBN7.210100,806,482 - 100,825,029 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10100,806,437 - 100,825,043 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10105,866,595 - 105,885,241 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010105,329,668 - 105,348,314 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.010100,727,451 - 100,746,001 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010104,118,999 - 104,137,258 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10104,118,945 - 104,137,319 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010104,144,378 - 104,162,637 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410105,645,505 - 105,665,079 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.110105,660,008 - 105,679,580 (+)NCBI
Celera1099,381,083 - 99,399,472 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Nup85
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555532,079,503 - 2,107,807 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555532,079,418 - 2,107,894 (+)NCBIChiLan1.0ChiLan1.0
NUP85
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21991,243,861 - 91,275,146 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11796,067,989 - 96,098,214 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01769,152,452 - 69,182,688 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11774,715,056 - 74,735,706 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1774,708,654 - 74,735,628 (+)Ensemblpanpan1.1panPan2
Nup85
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056025,880,087 - 5,908,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936594503,720 - 531,875 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936594503,698 - 531,851 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP85
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,071,812 - 6,103,979 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,072,731 - 6,103,972 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,035,178 - 6,066,433 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NUP85
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11646,433,821 - 46,463,822 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1646,433,579 - 46,463,759 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607717,203,748 - 17,236,457 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup85
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248015,022,617 - 5,057,140 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248015,023,255 - 5,057,140 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NUP85
466 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005624113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022422732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038484933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038546622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038610614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038675743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_533121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000007614   ⟹   ENSCAFP00000007050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,251,419 - 5,285,338 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000046385   ⟹   ENSCAFP00000042182
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,251,419 - 5,284,365 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000093136   ⟹   ENSCAFP00000060208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl95,251,472 - 5,276,310 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845048457   ⟹   ENSCAFP00845038013
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,921,442 - 5,968,410 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845048544   ⟹   ENSCAFP00845038077
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,921,447 - 5,955,497 (-)Ensembl
RefSeq Acc Id: XM_005624113   ⟹   XP_005624170
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,251,387 - 5,298,096 (-)NCBI
Dog10K_Boxer_Tasha95,930,369 - 5,977,004 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022422732   ⟹   XP_022278440
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,251,387 - 5,285,463 (-)NCBI
Dog10K_Boxer_Tasha95,930,369 - 5,964,560 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038484931   ⟹   XP_038340859
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.195,960,174 - 5,994,340 (-)NCBI
RefSeq Acc Id: XM_038484932   ⟹   XP_038340860
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.195,960,174 - 5,994,349 (-)NCBI
RefSeq Acc Id: XM_038484933   ⟹   XP_038340861
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.195,960,174 - 6,006,787 (-)NCBI
RefSeq Acc Id: XM_038546620   ⟹   XP_038402548
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.096,130,422 - 6,164,618 (-)NCBI
RefSeq Acc Id: XM_038546621   ⟹   XP_038402549
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.096,130,422 - 6,164,627 (-)NCBI
RefSeq Acc Id: XM_038546622   ⟹   XP_038402550
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.096,130,422 - 6,177,075 (-)NCBI
RefSeq Acc Id: XM_038610612   ⟹   XP_038466540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.096,070,418 - 6,104,620 (-)NCBI
RefSeq Acc Id: XM_038610613   ⟹   XP_038466541
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.096,070,418 - 6,104,629 (-)NCBI
RefSeq Acc Id: XM_038610614   ⟹   XP_038466542
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.096,070,418 - 6,117,068 (-)NCBI
RefSeq Acc Id: XM_038675741   ⟹   XP_038531669
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.095,921,442 - 5,955,668 (-)NCBI
RefSeq Acc Id: XM_038675742   ⟹   XP_038531670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.095,921,442 - 5,955,677 (-)NCBI
RefSeq Acc Id: XM_038675743   ⟹   XP_038531671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.095,921,442 - 5,968,402 (-)NCBI
RefSeq Acc Id: XM_533121   ⟹   XP_533121
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,251,387 - 5,285,463 (-)NCBI
Dog10K_Boxer_Tasha95,930,369 - 5,964,551 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005624170   ⟸   XM_005624113
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JG71 (UniProtKB/TrEMBL),   A0A8I3PY62 (UniProtKB/TrEMBL),   A0A8P0NSW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_533121   ⟸   XM_533121
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JIY9 (UniProtKB/TrEMBL),   A0A8C0RWU8 (UniProtKB/TrEMBL),   A0A8I3PUC1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022278440   ⟸   XM_022422732
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCAFP00000060208   ⟸   ENSCAFT00000093136
Ensembl Acc Id: ENSCAFP00000042182   ⟸   ENSCAFT00000046385
Ensembl Acc Id: ENSCAFP00000007050   ⟸   ENSCAFT00000007614
RefSeq Acc Id: XP_038340861   ⟸   XM_038484933
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038340860   ⟸   XM_038484932
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038340859   ⟸   XM_038484931
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038466542   ⟸   XM_038610614
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038466541   ⟸   XM_038610613
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038466540   ⟸   XM_038610612
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038531671   ⟸   XM_038675743
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JG71 (UniProtKB/TrEMBL),   A0A8I3PY62 (UniProtKB/TrEMBL),   A0A8P0NSW8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038531670   ⟸   XM_038675742
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038531669   ⟸   XM_038675741
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JIY9 (UniProtKB/TrEMBL),   A0A8C0RWU8 (UniProtKB/TrEMBL),   A0A8I3PUC1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402550   ⟸   XM_038546622
- Peptide Label: isoform X3
- UniProtKB: A0A8C0JG71 (UniProtKB/TrEMBL),   A0A8I3PY62 (UniProtKB/TrEMBL),   A0A8P0NSW8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402549   ⟸   XM_038546621
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038402548   ⟸   XM_038546620
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JIY9 (UniProtKB/TrEMBL),   A0A8C0RWU8 (UniProtKB/TrEMBL),   A0A8I3PUC1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845038077   ⟸   ENSCAFT00845048544
Ensembl Acc Id: ENSCAFP00845038013   ⟸   ENSCAFT00845048457

Promoters
RGD ID:13684433
Promoter ID:EPDNEW_C2500
Type:initiation region
Name:NUP85_1
Description:nucleoporin 85
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.195,285,423 - 5,285,483EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004729 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030003099 UniProtKB/TrEMBL
  ENSCAFG00040003415 UniProtKB/TrEMBL
  ENSCAFG00845027481 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007614.5 UniProtKB/TrEMBL
  ENSCAFT00000046385.4 UniProtKB/TrEMBL
  ENSCAFT00030005808.1 UniProtKB/TrEMBL
  ENSCAFT00040006501.1 UniProtKB/TrEMBL
  ENSCAFT00845048457 ENTREZGENE
  ENSCAFT00845048457.1 UniProtKB/TrEMBL
  ENSCAFT00845048544 ENTREZGENE
  ENSCAFT00845048544.1 UniProtKB/TrEMBL
InterPro Nucleoporin_Nup85 UniProtKB/TrEMBL
KEGG Report cfa:475913 UniProtKB/TrEMBL
NCBI Gene NUP85 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP85 UniProtKB/TrEMBL
  PTHR13373 UniProtKB/TrEMBL
Pfam Nucleopor_Nup85 UniProtKB/TrEMBL
UniProt A0A8C0JG71 ENTREZGENE
  A0A8C0JIY9 ENTREZGENE
  A0A8C0RWU8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PUC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PY62 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NSW8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44060 ENTREZGENE