Ccdc198 (coiled-coil domain containing 198)

Gene: Ccdc198 (coiled-coil domain containing 198) Ictidomys tridecemlineatus

Analyze

Symbol:

Ccdc198

Name:

coiled-coil domain containing 198

RGD ID:

12667300

Description:

INVOLVED IN energy homeostasis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome unknown C14orf105 homolog; chromosome unknown open reading frame, human C14orf105; CUNH14orf105; LOC101978377; uncharacterized protein C14orf105 homolog; uncharacterized protein CCDC198

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	72,143,035 - 72,187,240 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	2,021,240 - 2,048,538 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	2,021,240 - 2,048,538 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

energy homeostasis (ISO)

Cellular Component

cytoplasmic vesicle (ISO)

plasma membrane (ISO)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

Ccdc198
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	72,143,035 - 72,187,240 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	2,021,240 - 2,048,538 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	2,021,240 - 2,048,538 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC198
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	57,469,300 - 57,493,857 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	57,469,300 - 57,493,867 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	57,936,018 - 57,960,575 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	57,006,348 - 57,030,323 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	57,006,347 - 57,030,323	NCBI
Celera	14	37,986,663 - 38,010,642 (-)	NCBI		Celera
Cytogenetic Map	14	q22.3	NCBI
HuRef	14	38,101,315 - 38,125,295 (-)	NCBI		HuRef
CHM1_1	14	57,875,177 - 57,899,125 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	51,675,743 - 51,700,299 (-)	NCBI		T2T-CHM13v2.0

Ccdc198
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	49,463,815 - 49,482,902 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	49,457,045 - 49,482,931 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	49,226,358 - 49,245,445 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	49,219,588 - 49,245,474 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	49,846,034 - 49,865,103 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	48,148,309 - 48,167,351 (-)	NCBI		MGSCv36	mm8
Celera	14	45,430,089 - 45,449,222 (-)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	25.46	NCBI

Ccdc198
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	24,979,764 - 25,006,608 (-)	NCBI		GRCr8
mRatBN7.2	15	22,500,181 - 22,527,011 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	22,502,687 - 22,526,992 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	15	26,090,458 - 26,106,523 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	15	30,032,036 - 30,035,697 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	15	22,879,750 - 22,903,525 (-)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

Ccdc198
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	11,334,430 - 11,369,894 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	11,331,799 - 11,369,866 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC198
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	58,574,198 - 58,598,715 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	57,790,712 - 57,815,229 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	38,038,503 - 38,063,044 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	56,308,953 - 56,333,573 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	56,308,953 - 56,333,573 (-)	Ensembl	panpan1.1		panPan2

CCDC198
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	32,990,648 - 33,015,974 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	32,990,654 - 33,015,901 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	32,759,029 - 32,784,345 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	33,242,468 - 33,266,541 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	33,242,474 - 33,266,474 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	32,845,624 - 32,870,941 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	32,921,328 - 32,946,636 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	33,297,238 - 33,322,566 (-)	NCBI		UU_Cfam_GSD_1.0

CCDC198
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	186,596,704 - 186,633,082 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	186,597,777 - 186,633,140 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	207,166,509 - 207,202,258 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC198
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	34,645,598 - 34,669,384 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	34,643,800 - 34,668,976 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	22,863,139 - 22,888,195 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc198
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624884	2,470,248 - 2,501,492 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624884	2,471,699 - 2,501,466 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005322883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040274826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010003700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000010861 ⟹ ENSSTOP00000009743

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936495	2,021,240 - 2,048,538 (-)	Ensembl

RefSeq Acc Id:

XM_005322883 ⟹ XP_005322940

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	72,143,035 - 72,170,585 (+)	NCBI
SpeTri2.0	NW_004936495	2,021,240 - 2,048,538 (-)	NCBI

Sequence:

show sequence

ATGGGCCGGAGTCACTCTAAGGCTCACTCTCGGGTCACCAAAGTAGCCCCTCTGCAAAACAAAG
GAGCAGACACTCCTTCAGCTGGCCCTATGGATTTTGCATTTAATCACAACCTGGAAGAAAAGAG
CTCATATTCGTTGGCAAGACTACAGGACCGGAATGAAATTCTGAATGGCCAGCTGCCACCTCTG
CGAGAAACCTGGTATGGAAGGTATTCTACAGCACCCAGGGCCATGTATTTTGACATCCCACTGG
AACGGGGAGAAACAAGTATTATTAAAAGGCATCCACCTCGAAGACTTGAAAAGCTTGAACCCAT
TGACCTGCCACAAGTAATTACCTCTGAAAGACTCCTGAGCCAGCAACAAACCTGGACAAGGCAC
AAAGCAAAGCAAAAACTGGAAAAGAAAATGCAAACTCCAACATATACTTCTGGGAAAAGACAAT
ATTTGCATAAAATGCAAATGCTGGAAATGAACCGTAGAAGACAAGAGATCCAAATGGAGTTGAA
GAAGAGTCTTCATAGGGAAGAAAGAGTTACTAATAAGCAAAACCTGAGGGACCATAAAGTCAAG
AAAATTCTTCAAAGCATCCCAGGGAATGAAGATGATGACCTTCTAACCACATTACCTGATGAAA
CCATGAACAGAGGCCCAGGAAACTCACAGGCTGCAGAATTTCTGGACTATCAAGCAAGGAATGA
ATATTGTCACAGAAAAATTGGGAAAATGGAAGCATGGCTCCGTGAACAAGAGGCCCGGGGACAG
ATTCTCTGGGACATTTCCAGCTCAGACTCAGATGAGCAGGGAAATGATGATAAGAAGCCACGAG
CACTGGTGAGGACCAGGACAGAGAGAATCCCACTTTTTGATGAATTTTTTGATGGAGAATAA

hide sequence

RefSeq Acc Id:

XM_040274826 ⟹ XP_040130760

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024408640	72,143,035 - 72,187,240 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005322940	(Get FASTA)	NCBI Sequence Viewer
	XP_040130760	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000009743.3

RefSeq Acc Id:	XP_005322940 ⟸ XM_005322883
- Peptide Label:	isoform X1
- UniProtKB:	I3MG87 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGRSHSKAHSRVTKVAPLQNKGADTPSAGPMDFAFNHNLEEKSSYSLARLQDRNEILNGQLPPL RETWYGRYSTAPRAMYFDIPLERGETSIIKRHPPRRLEKLEPIDLPQVITSERLLSQQQTWTRH KAKQKLEKKMQTPTYTSGKRQYLHKMQMLEMNRRRQEIQMELKKSLHREERVTNKQNLRDHKVK KILQSIPGNEDDDLLTTLPDETMNRGPGNSQAAEFLDYQARNEYCHRKIGKMEAWLREQEARGQ ILWDISSSDSDEQGNDDKKPRALVRTRTERIPLFDEFFDGE hide sequence

RefSeq Acc Id:	XP_040130760 ⟸ XM_040274826
- Peptide Label:	isoform X2

RefSeq Acc Id:

ENSSTOP00000009743 ⟸ ENSSTOT00000010861

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010860	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010861.3	UniProtKB/TrEMBL
InterPro	DUF4619	UniProtKB/TrEMBL
NCBI Gene	LOC101978377	ENTREZGENE
PANTHER	COILED-COIL DOMAIN CONTAINING 198	UniProtKB/TrEMBL
	PTHR16065	UniProtKB/TrEMBL
Pfam	DUF4619	UniProtKB/TrEMBL
UniProt	I3MG87	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-07-13	Ccdc198	coiled-coil domain containing 198	LOC101978377	chromosome unknown open reading frame, human C14orf105	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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