Ccdc198 (coiled-coil domain containing 198) - Rat Genome Database

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Gene: Ccdc198 (coiled-coil domain containing 198) Heterocephalus glaber
Analyze
Symbol: Ccdc198
Name: coiled-coil domain containing 198
RGD ID: 18902135
Description: INVOLVED IN energy homeostasis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C14orf105 homolog; CUNH14orf105; uncharacterized protein C14orf105 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248842,470,248 - 2,501,492 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248842,471,699 - 2,501,466 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625  


Genomics

Comparative Map Data
Ccdc198
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248842,470,248 - 2,501,492 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248842,471,699 - 2,501,466 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CCDC198
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381457,469,300 - 57,493,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1457,469,300 - 57,493,867 (-)EnsemblGRCh38hg38GRCh38
GRCh371457,936,018 - 57,960,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,006,348 - 57,030,323 (-)NCBINCBI36Build 36hg18NCBI36
Build 341457,006,347 - 57,030,323NCBI
Celera1437,986,663 - 38,010,642 (-)NCBICelera
Cytogenetic Map14q22.3NCBI
HuRef1438,101,315 - 38,125,295 (-)NCBIHuRef
CHM1_11457,875,177 - 57,899,125 (-)NCBICHM1_1
T2T-CHM13v2.01451,675,743 - 51,700,299 (-)NCBIT2T-CHM13v2.0
Ccdc198
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391449,463,815 - 49,482,902 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1449,457,045 - 49,482,931 (-)EnsemblGRCm39 Ensembl
GRCm381449,226,358 - 49,245,445 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1449,219,588 - 49,245,474 (-)EnsemblGRCm38mm10GRCm38
MGSCv371449,846,034 - 49,865,103 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361448,148,309 - 48,167,351 (-)NCBIMGSCv36mm8
Celera1445,430,089 - 45,449,222 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1425.46NCBI
Ccdc198
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81524,979,764 - 25,006,608 (-)NCBIGRCr8
mRatBN7.21522,500,181 - 22,527,011 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1522,502,687 - 22,526,992 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01526,090,458 - 26,106,523 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01530,032,036 - 30,035,697 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1522,879,750 - 22,903,525 (-)NCBICelera
Cytogenetic Map15p14NCBI
Ccdc198
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546611,334,430 - 11,369,894 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546611,331,799 - 11,369,866 (-)NCBIChiLan1.0ChiLan1.0
CCDC198
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21558,574,198 - 58,598,715 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11457,790,712 - 57,815,229 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01438,038,503 - 38,063,044 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11456,308,953 - 56,333,573 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1456,308,953 - 56,333,573 (-)Ensemblpanpan1.1panPan2
CCDC198
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1832,990,648 - 33,015,974 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl832,990,654 - 33,015,901 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha832,759,029 - 32,784,345 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0833,242,468 - 33,266,541 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,242,474 - 33,266,474 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1832,845,624 - 32,870,941 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0832,921,328 - 32,946,636 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0833,297,238 - 33,322,566 (-)NCBIUU_Cfam_GSD_1.0
Ccdc198
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864072,143,035 - 72,187,240 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364952,021,240 - 2,048,538 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364952,021,240 - 2,048,538 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC198
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1186,596,704 - 186,633,082 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11186,597,777 - 186,633,140 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21207,166,509 - 207,202,258 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC198
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12434,645,598 - 34,669,384 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2434,643,800 - 34,668,976 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605322,863,139 - 22,888,195 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000001954   ⟹   ENSHGLP00000001908
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248842,470,248 - 2,501,492 (-)Ensembl
RefSeq Acc Id: XM_004871089   ⟹   XP_004871146
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248842,471,699 - 2,501,459 (-)NCBI
RefSeq Acc Id: XM_004871090   ⟹   XP_004871147
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248842,471,699 - 2,501,460 (-)NCBI
RefSeq Acc Id: XM_004871092   ⟹   XP_004871149
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248842,471,699 - 2,501,453 (-)NCBI
RefSeq Acc Id: XM_004871093   ⟹   XP_004871150
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248842,471,699 - 2,501,466 (-)NCBI
RefSeq Acc Id: XM_021249221   ⟹   XP_021104880
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248842,471,699 - 2,501,453 (-)NCBI
RefSeq Acc Id: XM_021249222   ⟹   XP_021104881
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248842,471,699 - 2,501,455 (-)NCBI
RefSeq Acc Id: XM_021249224   ⟹   XP_021104883
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248842,471,699 - 2,501,461 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004871150   ⟸   XM_004871093
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021104883   ⟸   XM_021249224
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004871147   ⟸   XM_004871090
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004871146   ⟸   XM_004871089
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021104881   ⟸   XM_021249222
- Peptide Label: isoform X4
- UniProtKB: A0A0P6K4X8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871149   ⟸   XM_004871092
- Peptide Label: isoform X3
- UniProtKB: G5ANI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104880   ⟸   XM_021249221
- Peptide Label: isoform X3
- UniProtKB: G5ANI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000001908   ⟸   ENSHGLT00000001954


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001456 Ensembl, ENTREZGENE
  ENSHGLG00100005400 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000001954 ENTREZGENE
  ENSHGLT00100049833 UniProtKB/TrEMBL
InterPro DUF4619 UniProtKB/TrEMBL
NCBI Gene Ccdc198 ENTREZGENE
PANTHER COILED-COIL DOMAIN CONTAINING 198 UniProtKB/TrEMBL
  PTHR16065 UniProtKB/TrEMBL
Pfam DUF4619 UniProtKB/TrEMBL
UniProt A0A0P6K4X8 ENTREZGENE, UniProtKB/TrEMBL
  G5ANI2 ENTREZGENE, UniProtKB/TrEMBL