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Gene: Ppp1r15a (protein phosphatase 1 regulatory subunit 15A) Ictidomys tridecemlineatus

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Symbol:

Ppp1r15a

Name:

protein phosphatase 1 regulatory subunit 15A

RGD ID:

12667292

Description:

ENCODES a protein that exhibits eukaryotic initiation factor eIF2 binding (ortholog); protein kinase binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN cellular response to antibiotic (ortholog); cellular response to calcium ion starvation (ortholog); cellular response to carbohydrate stimulus (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); Amaurosis Fugax (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	21,292,394 - 21,296,016 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936664	2,910,609 - 2,914,205 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp1r15a	Squirrel	Acute-On-Chronic Liver Failure		ISO	RGD:1342864	9068941	mRNA,protein:increased expression:liver	RGD	PMID:26234401\|REF_RGD_ID:32716425
Ppp1r15a	Squirrel	Amaurosis Fugax		ISO	RGD:732704	9068941	mRNA:increased expression:neuroretina (mouse)	RGD	PMID:17975099\|REF_RGD_ID:9999160
Ppp1r15a	Squirrel	amyotrophic lateral sclerosis		ISO	RGD:732704	9068941	protein:increased expression:spinal cord, astrocyte, microglia (mouse)	RGD	PMID:23118353\|REF_RGD_ID:9999418
Ppp1r15a	Squirrel	brain ischemia		ISO	RGD:621526	9068941	protein:increased expression:cerebral cortex, caudate nucleus (rat)	RGD	PMID:15713259\|REF_RGD_ID:9999408
Ppp1r15a	Squirrel	Chronic Hepatitis B		ISO	RGD:1342864	9068941	mRNA,protein:increased expression:liver	RGD	PMID:26234401\|REF_RGD_ID:32716425
Ppp1r15a	Squirrel	demyelinating disease	severity	ISO	RGD:732704	9068941		RGD	PMID:18818381\|REF_RGD_ID:9999156
Ppp1r15a	Squirrel	Emphysema		ISO	RGD:621526	9068941	mRNA:increased expression:lung (rat)	RGD	PMID:22675432\|REF_RGD_ID:9999407
Ppp1r15a	Squirrel	Intestinal Reperfusion Injury		ISO	RGD:1342864	9068941	mRNA:increased expression:jejunum (human)	RGD	PMID:20965186\|REF_RGD_ID:9999150
Ppp1r15a	Squirrel	Spinal Cord Injuries		ISO	RGD:621526	9068941	mRNA:increased expression:spinal cord (rat)	RGD	PMID:17578450\|REF_RGD_ID:9999410
Ppp1r15a	Squirrel	Stroke	treatment	ISO	RGD:621526	9068941		RGD	PMID:24573692\|REF_RGD_ID:9999417
Ppp1r15a	Squirrel	transient cerebral ischemia		ISO	RGD:621526	9068941	protein:increased expression:cerebral cortex (rat)	RGD	PMID:15255948\|REF_RGD_ID:9999154
Ppp1r15a	Squirrel	Zika fever		ISO	RGD:732704	9068941	mRNA:increased expression:brain	RGD	PMID:30241539\|REF_RGD_ID:32733625

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp1r15a	Squirrel	Spinal Cord Injuries		ISO	RGD:1342864	9068941	CTD Direct Evidence: marker/mechanism	CTD	PMID:29793971

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp1r15a	Squirrel	thalassemia		ISO	RGD:732704	9068941		MouseDO

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp1r15a	Squirrel	cellular response to antibiotic		ISO	RGD:621526	9068941	tunicamycin	RGD	PMID:21925170\|REF_RGD_ID:9999170
Ppp1r15a	Squirrel	cellular response to calcium ion starvation		ISO	RGD:621526	9068941		RGD	PMID:9878749\|REF_RGD_ID:9999163
Ppp1r15a	Squirrel	cellular response to carbohydrate stimulus		ISO	RGD:621526	9068941	4-hydroxynon-2-enal	RGD	PMID:24291486\|REF_RGD_ID:9999414
Ppp1r15a	Squirrel	cellular response to cordycepin		ISO	RGD:621526	9068941		RGD	PMID:21597460\|REF_RGD_ID:10045896
Ppp1r15a	Squirrel	cellular response to desipramine		ISO	RGD:621526	9068941		RGD	PMID:20549303\|REF_RGD_ID:9999406
Ppp1r15a	Squirrel	cellular response to gold(3+)		ISO	RGD:621526	9068941		RGD	PMID:16206274\|REF_RGD_ID:9999403
Ppp1r15a	Squirrel	cellular response to hypoxia		ISO	RGD:621526	9068941	oxygen-glucose deprivation	RGD	PMID:21525936\|REF_RGD_ID:10054236
Ppp1r15a	Squirrel	cellular response to methamphetamine hydrochloride		ISO	RGD:621526	9068941		RGD	PMID:22174933\|REF_RGD_ID:9999411
Ppp1r15a	Squirrel	cellular response to methyl methanesulfonate		ISO	RGD:621526	9068941		RGD	PMID:9811446\|REF_RGD_ID:9999409
Ppp1r15a	Squirrel	cellular response to UV		ISO	RGD:621526	9068941		RGD	PMID:9811446\|REF_RGD_ID:9999409
Ppp1r15a	Squirrel	cellular response to xenobiotic stimulus		ISO	RGD:621526	9068941	methapyrilene	RGD	PMID:23274394\|REF_RGD_ID:9999168
Ppp1r15a	Squirrel	endoplasmic reticulum unfolded protein response		ISO	RGD:621526	9068941		RGD	PMID:18266951\|PMID:22154936\|REF_RGD_ID:9999171\|REF_RGD_ID:9999413
Ppp1r15a	Squirrel	endoplasmic reticulum unfolded protein response	acts_upstream_of_or_within	ISO	MGI:2652765	9068941	PMID:15601821	MGI	PMID:15601821
Ppp1r15a	Squirrel	negative regulation of cell population proliferation		ISO	RGD:621526	9068941		RGD	PMID:12813455\|REF_RGD_ID:9854704
Ppp1r15a	Squirrel	negative regulation of peptidyl-threonine phosphorylation		ISO	RGD:621526	9068941	Tsc2	RGD	PMID:21925170\|REF_RGD_ID:9999170
Ppp1r15a	Squirrel	negative regulation of protein processing		ISO	RGD:621526	9068941	Casp3	RGD	PMID:21925170\|REF_RGD_ID:9999170
Ppp1r15a	Squirrel	negative regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:732704	9068941	PMID:11381086	ParkinsonsUK-UCL	PMID:11381086
Ppp1r15a	Squirrel	positive regulation of apoptotic process		ISO	RGD:621526	9068941		RGD	PMID:12813455\|PMID:16206274\|REF_RGD_ID:9854704\|REF_RGD_ID:9999403
Ppp1r15a	Squirrel	positive regulation of gene expression	involved_in	ISO	RGD:732704	9068941	PMID:14635196	ParkinsonsUK-UCL	PMID:14635196
Ppp1r15a	Squirrel	positive regulation of protein phosphorylation		ISO	RGD:621526	9068941	Tp53	RGD	PMID:15674324\|REF_RGD_ID:9854706
Ppp1r15a	Squirrel	positive regulation of signal transduction by p53 class mediator	involved_in	ISO	RGD:732704	9068941	PMID:14635196	ParkinsonsUK-UCL	PMID:14635196
Ppp1r15a	Squirrel	positive regulation of transcription by RNA polymerase I	involved_in	ISO	RGD:732704	9068941	PMID:14635196	ParkinsonsUK-UCL	PMID:14635196
Ppp1r15a	Squirrel	positive regulation of translational initiation in response to stress	involved_in	ISO	RGD:1342864	9068941	PMID:12556489	ParkinsonsUK-UCL	PMID:12556489
Ppp1r15a	Squirrel	protein localization to endoplasmic reticulum	involved_in	ISO	RGD:1342864	9068941	PMID:12556489	ParkinsonsUK-UCL	PMID:12556489
Ppp1r15a	Squirrel	regulation of angiogenesis		ISO	RGD:621526	9068941		RGD	PMID:10611347\|REF_RGD_ID:9999146
Ppp1r15a	Squirrel	regulation of translation in response to endoplasmic reticulum stress	involved_in	ISO	RGD:1342864	9068941	PMID:21518769	ParkinsonsUK-UCL	PMID:21518769
Ppp1r15a	Squirrel	regulation of translational initiation	involved_in	ISO	RGD:1342864	9068941	PMID:11564868	ParkinsonsUK-UCL	PMID:11564868
Ppp1r15a	Squirrel	regulation of translational initiation in response to stress	involved_in	ISO	RGD:732704	9068941	PMID:11381086	ParkinsonsUK-UCL	PMID:11381086
Ppp1r15a	Squirrel	regulation of translational initiation in response to stress	involved_in	ISO	RGD:1342864	9068941	PMID:11564868	ParkinsonsUK-UCL	PMID:11564868
Ppp1r15a	Squirrel	response to cocaine		ISO	RGD:621526	9068941		RGD	PMID:23644055\|REF_RGD_ID:9999166
Ppp1r15a	Squirrel	response to endoplasmic reticulum stress		ISO	RGD:621526	9068941		RGD	PMID:11389688\|REF_RGD_ID:9999412
Ppp1r15a	Squirrel	response to endoplasmic reticulum stress	involved_in	ISO	RGD:1342864	9068941	PMID:12556489	ParkinsonsUK-UCL	PMID:12556489
Ppp1r15a	Squirrel	response to endoplasmic reticulum stress	involved_in	ISO	RGD:732704	9068941	PMID:15601821	ParkinsonsUK-UCL	PMID:15601821
Ppp1r15a	Squirrel	response to endoplasmic reticulum stress	involved_in	ISO	RGD:732704	9068941	PMID:11381086	ParkinsonsUK-UCL	PMID:11381086
Ppp1r15a	Squirrel	response to environmental enrichment		ISO	RGD:621526	9068941		RGD	PMID:23644055\|REF_RGD_ID:9999166
Ppp1r15a	Squirrel	response to immobilization stress		ISO	RGD:621526	9068941		RGD	PMID:23644055\|REF_RGD_ID:9999166

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp1r15a	Squirrel	cytoplasm	located_in	ISO	RGD:1342864	9068941	PMID:21518769	ParkinsonsUK-UCL	PMID:21518769
Ppp1r15a	Squirrel	endoplasmic reticulum	located_in	ISO	RGD:1342864	9068941	PMID:12556489, PMID:21518769	ParkinsonsUK-UCL	PMID:12556489\|PMID:21518769
Ppp1r15a	Squirrel	Golgi apparatus	located_in	ISO	RGD:1342864	9068941	PMID:21518769	ParkinsonsUK-UCL	PMID:21518769
Ppp1r15a	Squirrel	membrane	located_in	ISO	RGD:1342864	9068941	PMID:21518769	ParkinsonsUK-UCL	PMID:21518769
Ppp1r15a	Squirrel	mitochondrion	located_in	ISO	RGD:1342864	9068941	PMID:21518769	ParkinsonsUK-UCL	PMID:21518769
Ppp1r15a	Squirrel	protein phosphatase type 1 complex	part_of	ISO	RGD:1342864	9068941	PMID:11564868, PMID:12556489	ParkinsonsUK-UCL	PMID:11564868\|PMID:12556489
Ppp1r15a	Squirrel	protein phosphatase type 1 complex	is_active_in	ISO	UniProtKB:P62136,UniProtKB:Q9BY44	9068941	PMID:34847777	DisProt	PMID:34847777

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp1r15a	Squirrel	eukaryotic initiation factor eIF2 binding	enables	ISO	UniProtKB:Q9BY44	9068941	PMID:34847777	DisProt	PMID:34847777
Ppp1r15a	Squirrel	protein binding	enables	ISO	UniProtKB:Q13522	9068941	PMID:11564868	IntAct	PMID:11564868
Ppp1r15a	Squirrel	protein binding	enables	ISO	UniProtKB:P62136	9068941	PMID:15231748, PMID:26095357	IntAct	PMID:15231748\|PMID:26095357
Ppp1r15a	Squirrel	protein binding	enables	ISO	UniProtKB:P62136\|UniProtKB:Q13148	9068941	PMID:29109149	IntAct	PMID:29109149
Ppp1r15a	Squirrel	protein binding	enables	ISO	UniProtKB:P56545	9068941	PMID:21988832	IntAct	PMID:21988832
Ppp1r15a	Squirrel	protein binding		ISO	RGD:620124	9068941		RGD	PMID:21925170\|REF_RGD_ID:9999170
Ppp1r15a	Squirrel	protein kinase binding	enables	ISO	UniProtKB:P07948	9068941	PMID:11517336	UniProt	PMID:11517336
Ppp1r15a	Squirrel	protein phosphatase 1 binding		ISO	RGD:621526	9068941		RGD	PMID:17760864\|REF_RGD_ID:9999404
Ppp1r15a	Squirrel	protein phosphatase 1 binding	enables	ISO	UniProtKB:P62136	9068941	PMID:12556489, PMID:21518769, PMID:34847777	ParkinsonsUK-UCL	PMID:12556489\|PMID:21518769\|PMID:34847777
Ppp1r15a	Squirrel	protein phosphatase 1 binding	enables	ISO	RGD:1342864	9068941	PMID:11564868	ParkinsonsUK-UCL	PMID:11564868
Ppp1r15a	Squirrel	protein phosphatase activator activity	enables	ISO	RGD:1342864	9068941	PMID:21518769	ParkinsonsUK-UCL	PMID:21518769
Ppp1r15a	Squirrel	protein phosphatase binding	enables	ISO	RGD:732704	9068941	PMID:11381086	ParkinsonsUK-UCL	PMID:11381086
Ppp1r15a	Squirrel	protein phosphatase regulator activity	enables	ISO	RGD:732704	9068941	PMID:11381086	ParkinsonsUK-UCL	PMID:11381086
Ppp1r15a	Squirrel	protein phosphatase regulator activity	enables	ISO	RGD:1342864	9068941	PMID:34847777	DisProt	PMID:34847777
Ppp1r15a	Squirrel	protein phosphatase regulator activity	enables	ISO	RGD:1342864	9068941	PMID:11564868, PMID:12556489	ParkinsonsUK-UCL	PMID:11564868\|PMID:12556489

Imported Annotations - PID (archival)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Ppp1r15a	Squirrel	Bone morphogenetic proteins signaling pathway		ISO	RGD:1342864	9068941		PID	PID:200144
Ppp1r15a	Squirrel	transforming growth factor-beta Smad dependent signaling pathway		ISO	RGD:1342864	9068941		PID	PID:200227

PMID:30032202

Ppp1r15a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	21,292,394 - 21,296,016 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936664	2,910,609 - 2,914,205 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PPP1R15A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	48,872,421 - 48,876,058 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	48,872,212 - 48,876,059 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	49,375,678 - 49,379,315 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	54,067,461 - 54,071,131 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	54,067,489 - 54,071,126	NCBI
Celera	19	46,243,013 - 46,246,683 (+)	NCBI		Celera
Cytogenetic Map	19	q13.33	NCBI
HuRef	19	45,752,093 - 45,755,763 (+)	NCBI		HuRef
CHM1_1	19	49,377,516 - 49,381,187 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	51,867,284 - 51,870,921 (+)	NCBI		T2T-CHM13v2.0

Ppp1r15a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	45,172,341 - 45,175,692 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	45,172,340 - 45,175,692 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	45,522,917 - 45,526,268 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	45,522,916 - 45,526,268 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	52,778,287 - 52,781,638 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	45,390,962 - 45,394,255 (-)	NCBI		MGSCv36	mm8
Celera	7	40,979,415 - 40,982,766 (-)	NCBI		Celera
Cytogenetic Map	7	B3	NCBI
cM Map	7	29.34	NCBI

Ppp1r15a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	105,136,521 - 105,139,596 (-)	NCBI		GRCr8
mRatBN7.2	1	96,000,053 - 96,003,128 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	96,000,058 - 96,003,171 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	101,385,485 - 101,388,560 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	109,858,161 - 109,861,236 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	103,148,553 - 103,151,628 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	101,511,899 - 101,515,043 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	101,511,901 - 101,514,974 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	102,590,677 - 102,593,806 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	95,994,023 - 95,997,080 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	96,072,182 - 96,074,782 (-)	NCBI
Celera	1	90,255,750 - 90,258,825 (-)	NCBI		Celera
Cytogenetic Map	1	q22	NCBI

Ppp1r15a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955559	1,750,168 - 1,753,629 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955559	1,750,227 - 1,753,607 (-)	NCBI	ChiLan1.0	ChiLan1.0

PPP1R15A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	54,976,288 - 54,980,220 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	56,902,557 - 56,906,388 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	45,872,596 - 45,876,376 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	54,880,052 - 54,883,840 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	54,880,141 - 54,883,003 (-)	Ensembl	panpan1.1		panPan2

PPP1R15A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	107,486,399 - 107,490,151 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	107,486,438 - 107,489,222 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	107,009,025 - 107,012,774 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	108,011,176 - 108,014,925 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	108,011,176 - 108,014,910 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	107,678,133 - 107,681,882 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	107,324,992 - 107,328,741 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	108,160,618 - 108,164,367 (-)	NCBI		UU_Cfam_GSD_1.0

PPP1R15A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	54,172,050 - 54,175,463 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	54,172,038 - 54,175,461 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	49,919,349 - 49,922,838 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PPP1R15A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666073	21,992,307 - 21,996,267 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ppp1r15a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	5,103,072 - 5,107,801 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	5,103,251 - 5,107,751 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_013363476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013363476 ⟹ XP_013218930

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	21,292,394 - 21,296,016 (+)	NCBI
SpeTri2.0	NW_004936664	2,910,609 - 2,914,205 (+)	NCBI

Sequence:

show sequence

TCGGTTCCCAGGCCTGCGGATGATTACGAACGAGACGCTCTGCAGCCGTTTGTCGCGACAGTGCTTGAGGCAGCCCGTGATACTTAGAGTCCCCGAGCCCCACGCCTGAGGGCGAGATGAACGCGCTG
GCCTTCCGAGCCGTCCGAACCGTCCGAACCTGCGATCGCTTCTGGCAGCCCGAGCCGGCGCTCCTGCCTCCTGGGTGACACTGACGCTCCTAGCCGATGGCTCCAGGCCAAGTACCCCATCACAGCAC
ACCCTGGAGGGAAGCCCACTACTCCTACCTCCTGTCCCCACTGATGGGCTTCCTCAGCCGGGCCTGGAGCCGGCTGAGGGGCCCAGGACCTTCAGAGCCCTGGCTGGTAGAAGCAGTGACAGGAGAAA
ATCTGGTAGAAGGTGGCCTGCAGGGAGAAGTGAAGGCTTCTTTGGCCATCTCCCATGGTCCCTGGGCCAGGCCTCCTCAAGGGGAAGCTGAAGACAGTGGAGTACCTCAAGAGAATGGAGAAGCAGAC
CTGGAGTCCTGCCTTGACCTGAAGCCCAGTAATTCCCCTCCTGAAGCTTGGGGACTTTTAGGCAGTGAAGAAAATAGTGAGAAAGATGCAAGCAGTGTCCCCAGAGAGCAGGGAATAGAAATTACAGA
TGGCCAGCCCCTGTCCCACAGCCTGCAGATAAGAGCCCTGCAAGGTTCTGATAAGAGTCCTGGGGAGGAGAAAGCTGAAGAGGAGGGAGTGACCAAGTTCTCTTATCCTTCATCACACTGGGAGTGGA
GCGATGTCAAGAAAGAAGCTCCTGCTGCCTCCACTTTCCCTGAGTCTTCAGGATCCCAACTTGGCACTTGTGTGTACTGCCCAGAGGAGAAAGAGAATCAAGCCACGGAGGAAAAAGGAACAGAAAAC
GAAGCCAGGAAGACCTCCGTTTCCCCCTCATTGGCAGGCTCCAGCTCCAGGGCTTGGGGATATTGTCCAGGCGAGAGGCCTAGGGAGAAGGGCAGGAAGGCCTGTGGAGCCCCTGGGAAAGAAGCTGA
CCCAGAGCCATGGTCCTCGGTTCCAGCCCAGAGGCACCTGCTTGGGGCTTTGGAGAATCAACCAAGTAAGAACGGAAAGGAAGAGGAGGACGACAGTGCTTTAGGGGCAACTGAGAAGGGAGGAGCCA
AGGGTCCTTCTTCCATTTCCTCTACAAGTGCCTCCGGGAGGGTCTGGGTGTGTCAGCCAGGGGAGAATGCCGAGGACCAGAAGAGTGACCTCGGATCAGCTGAGGAGGAAGGAGAAAGTGAGGCTTCC
TCTCCCACCCTCCCTACAAGTGCCCTCCTGAAGGCCTGGGTGTATCGTCCTGACTGTGGAGCAGCTGCCTGGGGCCAGCACCCCTCCCTTCAGGCCCAGAGTGCCCACCTCAGGGGCTGGCTATATCA
ACCAGGAAAGGAGACAGAGGAAGAGGAAGCTGAAGGGAAATGGGGAGACTCTGAGACCAGCCCCTTCAGAGTGGCCTTCTACCTACCTGGAGAGAAACCACCACCTCCCTGGACTGCTCCTAAGCTGC
CCCTCAGACTACAAAGACGACTCAGGTTGTCACAGACCCTCACCCAGGATCCAGACCCTGAAACTCCCCCAAAATCCAGAAAGGTGCGCTTCTCTGAGAAGGTCACCGTGCATTTCCTGGCTGTCTGG
GCAGGCCCGGCCCAGGCTGCCCGCCGGGGCCCCTGGGAACAGTTCGCTCGGGATCGGAGTCGCTTTGCCCGCCGCATCGCCCAGGCCCAGGAAAAGCTAGGTCCCTGCCTTACCCCTGCCTCCCGGGC
AAGAGCCTGGGCACGCCTTGGGAATGCACCCAGTTCTCTTACCCCCTTACCTGCCTCTACCCAGACCTTATTTTTCCCCTTGATCTCCTCGGAGGCTCCGGCTCAGGCCACGCCCTTGAGTCAGGCTA
TGGCCACACCCCCTCATACCCCTTCTTTGGAAGCACCAGCTCTTAGCCTGAATCTCACTGGGAGGCGTGGCTAAGACCAAATGGTTGCATGTTATTTATTAACTTTTTTAAAGTGTTGGTTTATTTAA
GGAATAAAGCTTTTTGATTTGTAGTGA

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Protein RefSeqs	XP_013218930	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3256459	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013218930 ⟸ XM_013363476

- Sequence:

show sequence

MAPGQVPHHSTPWREAHYSYLLSPLMGFLSRAWSRLRGPGPSEPWLVEAVTGENLVEGGLQGEVKASLAISHGPWARPPQGEAEDSGVPQENGEADLESCLDLKPSNSPPEAWGLLGSEENSEKDASS
VPREQGIEITDGQPLSHSLQIRALQGSDKSPGEEKAEEEGVTKFSYPSSHWEWSDVKKEAPAASTFPESSGSQLGTCVYCPEEKENQATEEKGTENEARKTSVSPSLAGSSSRAWGYCPGERPREKGR
KACGAPGKEADPEPWSSVPAQRHLLGALENQPSKNGKEEEDDSALGATEKGGAKGPSSISSTSASGRVWVCQPGENAEDQKSDLGSAEEEGESEASSPTLPTSALLKAWVYRPDCGAAAWGQHPSLQA
QSAHLRGWLYQPGKETEEEEAEGKWGDSETSPFRVAFYLPGEKPPPPWTAPKLPLRLQRRLRLSQTLTQDPDPETPPKSRKVRFSEKVTVHFLAVWAGPAQAARRGPWEQFARDRSRFARRIAQAQEK
LGPCLTPASRARAWARLGNAPSSLTPLPASTQTLFFPLISSEAPAQATPLSQAMATPPHTPSLEAPALSLNLTGRRG

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Database	Acc Id	Source(s)
NCBI Gene	Ppp1r15a	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - PID (archival)

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Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Annotations - PID (archival)